You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
1,711 by danpf
Fri, 2020-02-21 18:37
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
2,988 by danpf
Fri, 2020-02-21 18:32
Normal topic Protein-Protein Docking or Comparative Modeling
by Morrian_Lynn » Wed, 2020-01-29 19:01
1
1,452 by danpf
Fri, 2020-02-21 18:23
Normal topic How can I model ligands in comparative modeling
by Morrian_Lynn » Thu, 2020-02-20 09:57
1
1,338 by danpf
Fri, 2020-02-21 17:05
Normal topic get an increased energy after energy minimization when using different score functions for repacking and energy minimization
by xinmiaohe » Fri, 2020-02-07 11:59
1
1,467 by xinmiaohe
Fri, 2020-02-07 13:52
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
2,134 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
5,456 by rmoretti
Thu, 2020-01-30 15:42
Normal topic fixing sequence during grafting in antibody_designer
by COM » Fri, 2020-01-24 11:38
1
1,473 by jadolfbr
Tue, 2020-01-28 09:13
Normal topic appropriate sampling for protein docking to a multi chain assembly
by SWM » Fri, 2020-01-24 11:22
0
893 by SWM
Fri, 2020-01-24 11:22
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
0
964 by SWM
Fri, 2020-01-24 07:35
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
1,661 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
2,127 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic How to freeze ligand during FastRelax?
by dnamkr » Thu, 2020-01-02 14:53
1
1,693 by aloshbau
Fri, 2020-01-10 16:48
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
2,348 by dnamkr
Mon, 2019-12-30 11:43
Normal topic Can remodel really handle multiple insertions in one simulation?
by lanselibai » Sat, 2019-12-28 12:51
0
946 by lanselibai
Sat, 2019-12-28 12:51
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
2,331 by lanselibai
Fri, 2019-12-27 09:38
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
2,513 by dnamkr
Thu, 2019-12-26 10:22
Normal topic Error Implementing Match Style Constraints
by pwging13 » Thu, 2019-12-19 09:53
0
1,059 by pwging13
Thu, 2019-12-19 09:53
Normal topic using DARC in rosetta
by syntekabio2019 » Thu, 2019-12-12 01:27
0
1,021 by syntekabio2019
Thu, 2019-12-12 01:27
Normal topic using piper-flexpepdock
by syntekabio2019 » Thu, 2019-12-12 01:22
0
1,391 by syntekabio2019
Thu, 2019-12-12 01:22
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
0
1,018 by Corvin
Mon, 2019-12-02 02:00
Normal topic Issue with Rosetta LinkResidues Script
by adityapadhi » Wed, 2019-11-20 22:00
1
1,452 by JackMaguire
Fri, 2019-11-22 13:45
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
5,440 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
2,519 by mags33
Wed, 2019-11-06 09:35
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
2,143 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
3,616 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Symmetry mode in Remodel for N-terminal extension
by yvonne.chan2 » Mon, 2019-11-04 13:41
0
1,299 by yvonne.chan2
Mon, 2019-11-04 13:41
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
3,587 by dantimatter
Wed, 2019-10-30 09:43
Normal topic An error with score app
by Genta » Tue, 2019-10-29 18:46
0
8,617 by Genta
Tue, 2019-10-29 18:46
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
1,536 by smlewis
Tue, 2019-10-22 09:45
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,919 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic denovo modelling on a virus-coat protein dimer
by aseem121 » Wed, 2019-10-16 06:55
1
1,534 by danpf
Wed, 2019-10-16 13:03
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
6,496 by Corvin
Tue, 2019-10-15 01:12
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
1,661 by danpf
Thu, 2019-10-10 09:55
Normal topic "Make_fragments.pl" can't connect to dependencies links
by Corvin » Wed, 2019-09-04 23:54
2
2,355 by Corvin
Thu, 2019-10-10 01:12
Normal topic Segment File Gen - no ouput
by CATarr » Wed, 2019-10-09 19:05
0
953 by CATarr
Wed, 2019-10-09 19:05
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
5,419 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
1,348 by smlewis
Fri, 2019-09-27 11:54
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
2,718 by maruhuang
Thu, 2019-09-26 18:52
Normal topic how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot?
by Danielsebas » Tue, 2019-09-24 03:51
1
1,686 by smlewis
Tue, 2019-09-24 12:43
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
3,387 by smlewis
Mon, 2019-09-23 11:42
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
2,057 by mxp
Mon, 2019-09-23 01:40
Normal topic Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease
by bdzhh » Tue, 2019-09-17 17:02
1
1,547 by jadolfbr
Thu, 2019-09-19 08:53
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
1,555 by rmoretti
Wed, 2019-09-18 10:36
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
2,772 by rmoretti
Wed, 2019-09-18 10:21
Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
1,945 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic How to analyse multiple silent files from "Abinitiorelax" output to find best models?
by Danielsebas » Tue, 2019-09-10 10:01
1
1,545 by smlewis
Mon, 2019-09-16 12:22
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
2,404 by danpf
Mon, 2019-09-16 09:51
Normal topic How to make new VALL database?
by Danielsebas » Sun, 2019-09-08 02:16
2
2,640 by Danielsebas
Wed, 2019-09-11 00:44
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
2,140 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic extract docking pose from ligand docking silent file
by Ruska322 » Sat, 2019-09-07 05:21
0
1,093 by Ruska322
Sat, 2019-09-07 05:21
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
3,200 by danpf
Fri, 2019-09-06 11:29
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,878 by Ruska322
Fri, 2019-09-06 07:13
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
2,544 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic /database folder after running "install_dependencies.pl" size 657 GB?
by Danielsebas » Tue, 2019-09-03 03:32
1
1,466 by danpf
Tue, 2019-09-03 10:15
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
2,132 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
3,333 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic A problem with "make_fragments.pl" script dependencies
by Corvin » Fri, 2019-08-16 04:30
2
2,611 by Corvin
Tue, 2019-08-27 00:46
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,778 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,951 by rmoretti
Mon, 2019-08-26 12:57
Normal topic "Angle constraint: 0-length bonds" error
by purvi24 » Sun, 2019-07-28 10:09
1
1,720 by rmoretti
Mon, 2019-08-26 12:49
Normal topic PDB file name too long to be handled by file system
by dave » Thu, 2019-08-08 03:10
1
1,461 by rmoretti
Mon, 2019-08-26 12:17
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
1,473 by rmoretti
Mon, 2019-08-26 12:03
Normal topic how to run ala_scan.xml
by xinmiaohe » Mon, 2019-08-26 09:38
0
1,171 by xinmiaohe
Mon, 2019-08-26 09:38
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,903 by rmoretti
Sun, 2019-08-25 19:15
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
1,492 by everyday847
Fri, 2019-08-23 04:08
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
1,014 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,810 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
2,436 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
1,030 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
7,245 by mxp
Mon, 2019-08-12 18:42
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
4,388 by Yero
Thu, 2019-07-18 01:39
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
1,696 by rmoretti
Wed, 2019-07-10 10:10
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
2,114 by rmoretti
Wed, 2019-07-10 09:47
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
1,556 by rmoretti
Wed, 2019-07-10 09:24
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
2,310 by rmoretti
Wed, 2019-07-10 09:22
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
4,354 by rmoretti
Tue, 2019-07-09 10:13
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
2,161 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
2,561 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
2,052 by orionshih
Wed, 2019-06-26 03:54
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,840 by rmoretti
Mon, 2019-06-24 15:19
Normal topic The relax qustion of Rosetta VIP
by asbelx » Mon, 2019-06-10 07:52
1
1,526 by rmoretti
Mon, 2019-06-24 14:42
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
1,606 by rmoretti
Mon, 2019-06-24 14:39
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
2,014 by rmoretti
Mon, 2019-06-24 13:46
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
1,778 by rmoretti
Mon, 2019-06-24 13:43
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
1,857 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
1,528 by vmulligan
Thu, 2019-06-13 15:01
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
1,946 by vmulligan
Thu, 2019-06-13 14:59
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
2,798 by esozdemir
Thu, 2019-06-13 12:19
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
2,472 by Corvin
Wed, 2019-06-12 00:04
Normal topic SEWING and motif file generation
by rbjacob » Thu, 2018-07-12 07:28
10
7,245 by zhangying1990
Tue, 2019-06-04 18:04
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
2,258 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
1,691 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
2,365 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
3,399 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
3,746 by ajasja
Wed, 2019-05-15 15:40
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
1,649 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,761 by rmoretti
Thu, 2019-05-09 15:40
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,965 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
3,798 by johnnytam100
Thu, 2019-04-25 19:28
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications