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Rosetta 3 - Applications
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,520 |
by rmoretti Wed, 2019-07-10 09:47 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,173 |
by rmoretti Wed, 2019-07-10 09:24 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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1,717 |
by rmoretti Wed, 2019-07-10 09:22 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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3,068 |
by rmoretti Tue, 2019-07-09 10:13 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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1,605 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
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1,975 |
by gszwabowski Wed, 2019-06-26 10:25 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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1,474 |
by orionshih Wed, 2019-06-26 03:54 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,332 |
by rmoretti Mon, 2019-06-24 15:19 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,094 |
by rmoretti Mon, 2019-06-24 14:42 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,202 |
by rmoretti Mon, 2019-06-24 14:39 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,553 |
by rmoretti Mon, 2019-06-24 13:46 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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1,297 |
by rmoretti Mon, 2019-06-24 13:43 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,362 |
by jeliazkov Mon, 2019-06-17 06:03 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,092 |
by vmulligan Thu, 2019-06-13 15:01 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,408 |
by vmulligan Thu, 2019-06-13 14:59 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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2,100 |
by esozdemir Thu, 2019-06-13 12:19 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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1,798 |
by Corvin Wed, 2019-06-12 00:04 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
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5,366 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
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1,671 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,228 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,702 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,441 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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2,689 |
by ajasja Wed, 2019-05-15 15:40 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,234 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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1,295 |
by rmoretti Thu, 2019-05-09 15:40 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,453 |
by rmoretti Fri, 2019-04-26 12:13 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
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2,911 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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1,343 |
by nannemdp Thu, 2019-04-25 07:58 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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1,162 |
by rmoretti Tue, 2019-04-16 11:07 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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2,371 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,087 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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1,231 |
by rmoretti Fri, 2019-04-05 00:18 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
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4,742 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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2,995 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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1,224 |
by rmoretti Fri, 2019-03-29 13:21 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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1,571 |
by everyday847 Fri, 2019-03-29 13:13 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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2,804 |
by rmoretti Fri, 2019-03-29 12:25 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,338 |
by rmoretti Fri, 2019-03-29 09:58 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,150 |
by rmoretti Fri, 2019-03-29 09:45 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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3,022 |
by rmoretti Fri, 2019-03-29 09:30 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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760 |
by engand93 Wed, 2019-03-27 02:43 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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4,091 |
by purvi24 Mon, 2019-03-11 06:43 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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2,758 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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1,787 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
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1,811 |
by tsztain Mon, 2019-02-18 09:55 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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1,634 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
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926 |
by dhirajks Thu, 2018-12-13 19:34 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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2,114 |
by smlewis Wed, 2018-12-12 16:51 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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3,907 |
by tsztain Tue, 2018-12-11 13:41 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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1,690 |
by jeliazkov Fri, 2018-12-07 12:51 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
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782 |
by sizhang Wed, 2018-12-05 15:22 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
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1,555 |
by rmoretti Tue, 2018-12-04 08:55 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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5,766 |
by dfcoelho Wed, 2018-11-28 08:07 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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1,577 |
by AJVincelli Sun, 2018-11-25 11:29 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,021 |
by rmoretti Fri, 2018-11-23 11:23 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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1,747 |
by rmoretti Fri, 2018-11-23 07:59 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
20 |
13,949 |
by rmoretti Wed, 2018-11-21 15:45 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
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1,506 |
by rmoretti Wed, 2018-11-21 15:40 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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1,428 |
by rmoretti Wed, 2018-11-21 15:31 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,185 |
by rmoretti Wed, 2018-11-21 15:10 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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816 |
by ylwang Sun, 2018-11-18 17:51 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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2,433 |
by rmoretti Mon, 2018-11-12 14:35 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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4,022 |
by rmoretti Mon, 2018-11-12 14:31 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,180 |
by jadolfbr Fri, 2018-11-09 14:28 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
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2,734 |
by ladimafakher Thu, 2018-11-01 03:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
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3,805 |
by matteoferla Tue, 2018-10-30 02:54 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
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3,283 |
by G Mustafa Thu, 2018-10-18 05:31 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,132 |
by G Mustafa Wed, 2018-10-17 05:41 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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3,458 |
by dfcoelho Tue, 2018-10-16 09:05 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
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2,294 |
by smlewis Mon, 2018-10-15 08:42 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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2,630 |
by cossio Fri, 2018-10-12 04:43 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
7,110 |
by Anpu Tue, 2018-09-25 19:06 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,366 |
by Anpu Tue, 2018-09-25 18:53 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,336 |
by rmoretti Thu, 2018-09-20 09:23 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
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1,970 |
by rmoretti Thu, 2018-09-20 09:19 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,087 |
by smlewis Fri, 2018-09-14 10:34 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,412 |
by smlewis Mon, 2018-09-10 11:48 |
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structure prediction by MA » Wed, 2018-09-05 00:50 |
0 |
762 |
by MA Wed, 2018-09-05 00:50 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
0 |
902 |
by mbakalar Fri, 2018-08-31 13:06 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,298 |
by rmoretti Fri, 2018-08-24 11:28 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
6 |
3,876 |
by smlewis Wed, 2018-08-08 15:48 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
1 |
1,551 |
by rmoretti Fri, 2018-08-03 08:26 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
1 |
1,222 |
by rmoretti Fri, 2018-08-03 08:16 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
1,294 |
by rmoretti Fri, 2018-08-03 07:54 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
1,728 |
by jlapin Wed, 2018-08-01 07:15 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,145 |
by smlewis Fri, 2018-07-27 13:32 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,708 |
by ashu4487 Mon, 2018-07-16 19:24 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,603 |
by rmoretti Thu, 2018-06-28 12:58 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
2,988 |
by rmoretti Thu, 2018-06-28 12:44 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
3,240 |
by tong Sun, 2018-06-24 23:30 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
2,627 |
by asbelx Mon, 2018-06-18 22:34 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
4,342 |
by smlewis Thu, 2018-06-14 10:26 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
2,785 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
52,663 |
by rmoretti Fri, 2018-05-18 12:40 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
1 |
1,280 |
by rmoretti Fri, 2018-05-18 12:28 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
2,550 |
by cossio Fri, 2018-05-18 09:51 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
1 |
1,385 |
by smlewis Mon, 2018-05-07 11:42 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
2,659 |
by subha Fri, 2018-04-20 12:49 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
0 |
949 |
by asbelx Fri, 2018-04-20 03:33 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
2,686 |
by Loki01 Thu, 2018-04-12 08:28 |
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