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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,421 |
by smlewis Tue, 2019-09-24 12:43 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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2,823 |
by smlewis Mon, 2019-09-23 11:42 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
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1,713 |
by mxp Mon, 2019-09-23 01:40 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,311 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,308 |
by rmoretti Wed, 2019-09-18 10:36 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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2,323 |
by rmoretti Wed, 2019-09-18 10:21 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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1,584 |
by Danielsebas Tue, 2019-09-17 01:03 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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1,256 |
by smlewis Mon, 2019-09-16 12:22 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
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1,974 |
by danpf Mon, 2019-09-16 09:51 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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2,260 |
by Danielsebas Wed, 2019-09-11 00:44 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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1,808 |
by Danielsebas Sun, 2019-09-08 02:08 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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906 |
by Ruska322 Sat, 2019-09-07 05:21 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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2,659 |
by danpf Fri, 2019-09-06 11:29 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,567 |
by Ruska322 Fri, 2019-09-06 07:13 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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2,136 |
by Danielsebas Thu, 2019-09-05 03:35 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,202 |
by danpf Tue, 2019-09-03 10:15 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
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1,752 |
by Danielsebas Sun, 2019-09-01 02:38 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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2,759 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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2,208 |
by Corvin Tue, 2019-08-27 00:46 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,498 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,644 |
by rmoretti Mon, 2019-08-26 12:57 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
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1,401 |
by rmoretti Mon, 2019-08-26 12:49 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,197 |
by rmoretti Mon, 2019-08-26 12:17 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,207 |
by rmoretti Mon, 2019-08-26 12:03 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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944 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,606 |
by rmoretti Sun, 2019-08-25 19:15 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,219 |
by everyday847 Fri, 2019-08-23 04:08 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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858 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,534 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
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2,035 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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861 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
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5,857 |
by mxp Mon, 2019-08-12 18:42 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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3,733 |
by Yero Thu, 2019-07-18 01:39 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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1,429 |
by rmoretti Wed, 2019-07-10 10:10 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,767 |
by rmoretti Wed, 2019-07-10 09:47 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,319 |
by rmoretti Wed, 2019-07-10 09:24 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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1,983 |
by rmoretti Wed, 2019-07-10 09:22 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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3,561 |
by rmoretti Tue, 2019-07-09 10:13 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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1,808 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
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2,192 |
by gszwabowski Wed, 2019-06-26 10:25 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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1,710 |
by orionshih Wed, 2019-06-26 03:54 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,524 |
by rmoretti Mon, 2019-06-24 15:19 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,259 |
by rmoretti Mon, 2019-06-24 14:42 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,372 |
by rmoretti Mon, 2019-06-24 14:39 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,720 |
by rmoretti Mon, 2019-06-24 13:46 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
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1,489 |
by rmoretti Mon, 2019-06-24 13:43 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,566 |
by jeliazkov Mon, 2019-06-17 06:03 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,269 |
by vmulligan Thu, 2019-06-13 15:01 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,619 |
by vmulligan Thu, 2019-06-13 14:59 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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2,391 |
by esozdemir Thu, 2019-06-13 12:19 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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2,052 |
by Corvin Wed, 2019-06-12 00:04 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
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6,117 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
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1,891 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,405 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,982 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,807 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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3,155 |
by ajasja Wed, 2019-05-15 15:40 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,404 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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1,497 |
by rmoretti Thu, 2019-05-09 15:40 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,665 |
by rmoretti Fri, 2019-04-26 12:13 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
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3,286 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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1,564 |
by nannemdp Thu, 2019-04-25 07:58 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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1,320 |
by rmoretti Tue, 2019-04-16 11:07 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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2,735 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,411 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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1,415 |
by rmoretti Fri, 2019-04-05 00:18 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
5,491 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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3,294 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
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1,407 |
by rmoretti Fri, 2019-03-29 13:21 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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1,777 |
by everyday847 Fri, 2019-03-29 13:13 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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3,052 |
by rmoretti Fri, 2019-03-29 12:25 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
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1,515 |
by rmoretti Fri, 2019-03-29 09:58 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,321 |
by rmoretti Fri, 2019-03-29 09:45 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,462 |
by rmoretti Fri, 2019-03-29 09:30 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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874 |
by engand93 Wed, 2019-03-27 02:43 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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4,638 |
by purvi24 Mon, 2019-03-11 06:43 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,148 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
2 |
2,014 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
2,068 |
by tsztain Mon, 2019-02-18 09:55 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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1,883 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
0 |
1,067 |
by dhirajks Thu, 2018-12-13 19:34 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,490 |
by smlewis Wed, 2018-12-12 16:51 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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4,474 |
by tsztain Tue, 2018-12-11 13:41 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
1 |
1,924 |
by jeliazkov Fri, 2018-12-07 12:51 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
0 |
882 |
by sizhang Wed, 2018-12-05 15:22 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
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1,771 |
by rmoretti Tue, 2018-12-04 08:55 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
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6,617 |
by dfcoelho Wed, 2018-11-28 08:07 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
2,285 |
by AJVincelli Sun, 2018-11-25 11:29 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,405 |
by rmoretti Fri, 2018-11-23 11:23 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
1 |
1,953 |
by rmoretti Fri, 2018-11-23 07:59 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
20 |
15,317 |
by rmoretti Wed, 2018-11-21 15:45 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,728 |
by rmoretti Wed, 2018-11-21 15:40 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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1,660 |
by rmoretti Wed, 2018-11-21 15:31 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
1 |
1,346 |
by rmoretti Wed, 2018-11-21 15:10 |
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denovo_density don't output a pdb file by ylwang » Sun, 2018-11-18 17:51 |
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939 |
by ylwang Sun, 2018-11-18 17:51 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,708 |
by rmoretti Mon, 2018-11-12 14:35 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
4,448 |
by rmoretti Mon, 2018-11-12 14:31 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
1 |
1,368 |
by jadolfbr Fri, 2018-11-09 14:28 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
3,078 |
by ladimafakher Thu, 2018-11-01 03:47 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,107 |
by matteoferla Tue, 2018-10-30 02:54 |
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