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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
3,387 by purvi24
Mon, 2019-03-11 06:43
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,347 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
1,538 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
1,523 by tsztain
Mon, 2019-02-18 09:55
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,407 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
786 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
1,780 by smlewis
Wed, 2018-12-12 16:51
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
3,369 by tsztain
Tue, 2018-12-11 13:41
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,423 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
667 by sizhang
Wed, 2018-12-05 15:22
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,357 by rmoretti
Tue, 2018-12-04 08:55
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
4,722 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,343 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
2,607 by rmoretti
Fri, 2018-11-23 11:23
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
1,514 by rmoretti
Fri, 2018-11-23 07:59
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
12,444 by rmoretti
Wed, 2018-11-21 15:45
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,313 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,202 by rmoretti
Wed, 2018-11-21 15:31
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
1,010 by rmoretti
Wed, 2018-11-21 15:10
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
680 by ylwang
Sun, 2018-11-18 17:51
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,152 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
3,579 by rmoretti
Mon, 2018-11-12 14:31
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
991 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
2,362 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,494 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
2,979 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
964 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
2,968 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
1,974 by smlewis
Mon, 2018-10-15 08:42
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,180 by cossio
Fri, 2018-10-12 04:43
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
6,251 by Anpu
Tue, 2018-09-25 19:06
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
3,081 by Anpu
Tue, 2018-09-25 18:53
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,134 by rmoretti
Thu, 2018-09-20 09:23
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
1,709 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
1,800 by smlewis
Fri, 2018-09-14 10:34
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,115 by smlewis
Mon, 2018-09-10 11:48
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
652 by MA
Wed, 2018-09-05 00:50
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
774 by mbakalar
Fri, 2018-08-31 13:06
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,115 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
3,365 by smlewis
Wed, 2018-08-08 15:48
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,383 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
1,054 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,119 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
1,480 by jlapin
Wed, 2018-08-01 07:15
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
982 by smlewis
Fri, 2018-07-27 13:32
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
2,409 by ashu4487
Mon, 2018-07-16 19:24
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,305 by rmoretti
Thu, 2018-06-28 12:58
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
2,587 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
2,810 by tong
Sun, 2018-06-24 23:30
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
2,296 by asbelx
Mon, 2018-06-18 22:34
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
3,801 by smlewis
Thu, 2018-06-14 10:26
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
2,475 by malkeet.singh
Mon, 2018-05-21 04:26
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
49,177 by rmoretti
Fri, 2018-05-18 12:40
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,101 by rmoretti
Fri, 2018-05-18 12:28
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,174 by cossio
Fri, 2018-05-18 09:51
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,214 by smlewis
Mon, 2018-05-07 11:42
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,296 by subha
Fri, 2018-04-20 12:49
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
835 by asbelx
Fri, 2018-04-20 03:33
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,349 by Loki01
Thu, 2018-04-12 08:28
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,258 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,103 by rmoretti
Tue, 2018-04-10 15:29
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
819 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
791 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
866 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
769 by enmirts
Wed, 2018-03-28 10:34
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
3,090 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
4,341 by rmoretti
Mon, 2018-03-19 12:12
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
2,220 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
1,729 by cossio
Sun, 2018-03-11 09:12
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
2,229 by rmoretti
Wed, 2018-03-07 08:44
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,228 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
4,349 by Loki01
Thu, 2018-02-15 13:54
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,125 by rmoretti
Tue, 2018-02-06 09:47
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,576 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,354 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,628 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,109 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
1,705 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
2,876 by smlewis
Sat, 2017-12-23 15:56
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
3,835 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
751 by sdh_h
Sun, 2017-12-17 06:07
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,214 by kamau
Wed, 2017-12-13 14:31
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
2,793 by smlewis
Wed, 2017-12-13 09:54
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
887 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
876 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
773 by ziqi1234
Fri, 2017-12-08 07:52
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,125 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
3,469 by fradom
Tue, 2017-12-05 01:52
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
986 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,292 by smlewis
Mon, 2017-12-04 12:18
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
3,081 by rmoretti
Fri, 2017-12-01 12:05
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
4,803 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
2,412 by Sunyp_IM
Mon, 2017-11-20 19:20
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
17,872 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,370 by smlewis
Mon, 2017-11-13 10:43
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
3,803 by jessye
Fri, 2017-11-03 20:15
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,096 by cdegut
Fri, 2017-11-03 05:50
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
1,632 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
3,326 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
1,117 by rmoretti
Tue, 2017-10-17 09:03
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