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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,617 by Marius1987
Sun, 2016-04-10 12:09
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
7,341 by albumns
Mon, 2014-04-21 06:47
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
5,467 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
5,108 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic fixbb design using damped LJ
by Anonymous » Fri, 2012-08-17 03:51
8
8,184 by Anonymous
Mon, 2014-04-21 06:47
Hot topic Fixbb Multiple Resfiles
by protos_heis » Mon, 2012-10-15 10:34
18
15,807 by protos_heis
Mon, 2014-04-21 06:47
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
5,637 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic FixedBB design output no beta strands
by tkoh » Fri, 2023-08-25 01:02
1
526 by rmoretti
Tue, 2023-08-29 20:13
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,530 by kamau
Wed, 2014-09-24 11:35
Normal topic fixing disulfides in homolgy modeling
by pdbb » Wed, 2013-02-13 11:43
10
12,350 by kamau
Mon, 2014-09-22 09:39
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
2,391 by rmoretti
Tue, 2015-11-24 16:16
Normal topic fixing sequence during grafting in antibody_designer
by COM » Fri, 2020-01-24 11:38
1
1,473 by jadolfbr
Tue, 2020-01-28 09:13
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,881 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,823 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
3,228 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
5,889 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
6,471 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
3,628 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
825 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
0
778 by nrollins
Mon, 2021-07-26 14:16
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
3,370 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic FlexPepDock bug? Constraints do not appear in total_score?
by nrollins » Mon, 2021-07-26 14:29
0
814 by nrollins
Mon, 2021-07-26 14:29
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
2,942 by cam11
Wed, 2014-08-13 10:06
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
4,192 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
4,127 by smlewis
Mon, 2014-04-21 06:47
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,704 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
1,207 by mbakalar
Fri, 2018-08-31 13:06
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
1,288 by evo_umich
Mon, 2018-04-02 12:13
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
0
969 by jlawrie
Tue, 2020-09-15 12:52
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,887 by rmoretti
Mon, 2014-04-21 06:47
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
2,780 by ays
Tue, 2014-09-30 08:31
Normal topic Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C)
by jcampecino » Wed, 2020-05-13 12:22
0
1,140 by jcampecino
Wed, 2020-05-13 12:22
Normal topic Flex_ddG突变设计
by wangtao » Thu, 2022-05-05 02:46
0
1,078 by wangtao
Thu, 2022-05-05 02:46
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
3,236 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
6,695 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic FloppyTail as a rosettascripts file
by tiagogomes89 » Mon, 2015-01-19 02:45
0
1,464 by tiagogomes89
Mon, 2015-01-19 02:45
Hot topic FloppyTail bugs for N-terminal tails
by Dave C » Thu, 2012-03-01 13:06
18
16,444 by bbarryabc
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
3,872 by felipet
Mon, 2014-04-21 06:47
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,927 by smlewis
Fri, 2016-11-11 08:33
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
2,385 by smlewis
Mon, 2014-07-07 11:58
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
3,867 by rmoretti
Thu, 2015-09-17 12:47
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
3,149 by smlewis
Mon, 2014-04-21 06:47
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
2,511 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold tree C->N: RosettaScripts
by aroop » Wed, 2013-02-13 10:31
8
8,389 by smlewis
Mon, 2014-04-21 06:47
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,930 by danielles
Mon, 2014-04-21 06:47
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
4,086 by rmoretti
Fri, 2015-06-19 13:53
Hot topic Folppy Tail and Constraints
by sfulad2 » Fri, 2017-05-12 12:23
15
10,645 by smlewis
Fri, 2017-09-08 09:16
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
3,168 by dgront
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
7,153 by yarovoy
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
3,609 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Fragment library (vall file) from Robetta?
by alex » Sun, 2017-02-19 08:12
0
1,703 by alex
Sun, 2017-02-19 08:12
Normal topic fragment picker does not follow dihedral constraints
by attesor » Tue, 2016-05-24 23:22
12
11,274 by smlewis
Wed, 2016-08-17 07:56
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
3,343 by exchhattu
Mon, 2014-04-21 06:47
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,829 by David Hoover
Mon, 2014-04-21 06:47
Normal topic fragment_picker with fasta only
by gw » Tue, 2011-11-15 13:20
3
4,565 by gw
Mon, 2014-04-21 06:47
Normal topic fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so
by starone » Mon, 2016-06-20 19:22
11
14,017 by starone
Fri, 2016-06-24 18:29
Normal topic fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz
by yueyuedake » Wed, 2023-07-12 03:36
6
1,318 by yueyuedake
Sun, 2023-07-16 19:17
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
3,123 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Mon, 2016-01-04 11:26
0
1,584 by achambe
Mon, 2016-01-04 11:26
Hot topic Garbled Ligands from docking_protocol
by skovacs » Tue, 2011-12-20 07:55
21
20,007 by skovacs
Mon, 2014-04-21 06:47
Normal topic General question regarding ligand-docking
by Alison_Yajie » Thu, 2020-05-07 09:48
0
860 by Alison_Yajie
Thu, 2020-05-07 09:48
Normal topic Generalized KIC loop closure affects downstream residues without perturbations
by chenna » Mon, 2021-04-26 02:16
2
1,542 by chenna
Wed, 2021-04-28 07:18
Normal topic GeneralizedKIC loop closure error
by chenna » Sat, 2021-04-10 00:21
2
1,661 by chenna
Mon, 2021-04-12 22:08
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
4,237 by jrcf
Mon, 2015-10-05 21:32
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
3,574 by deltag
Mon, 2014-04-21 06:47
Normal topic Generating a new Vall database
by vijay.anand » Tue, 2023-06-20 12:08
0
468 by vijay.anand
Tue, 2023-06-20 12:08
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,983 by smlewis
Wed, 2016-03-09 04:11
Normal topic Generating the 3-mer and 9-mer fragments
by Prasoon » Wed, 2022-02-09 09:04
0
1,286 by Prasoon
Wed, 2022-02-09 09:04
Normal topic get an increased energy after energy minimization when using different score functions for repacking and energy minimization
by xinmiaohe » Fri, 2020-02-07 11:59
1
1,467 by xinmiaohe
Fri, 2020-02-07 13:52
Normal topic getting a3m files
by alonwenger » Wed, 2021-12-15 02:38
2
3,003 by alonwenger
Sat, 2021-12-18 12:32
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
2,612 by smlewis
Tue, 2017-08-15 23:19
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
1,004 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
3,019 by lanselibai
Tue, 2014-11-11 04:42
Normal topic Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id.
by SubhaK » Wed, 2023-01-18 23:33
0
1,025 by SubhaK
Wed, 2023-01-18 23:33
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
2,143 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
5,573 by jessye
Fri, 2017-11-03 20:15
Normal topic Hamiltonian Exchange
by JSK » Mon, 2024-03-18 12:48
0
183 by JSK
Tue, 2024-03-19 09:21
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
4,349 by protos_heis
Tue, 2014-08-05 12:47
Normal topic hbond_sr_bb and hbond_lr_bb for different chains
by tylerborrman » Tue, 2020-10-13 13:41
2
1,953 by tylerborrman
Tue, 2021-02-09 16:33
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
2,033 by smlewis
Thu, 2015-10-22 08:04
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,798 by Sandy
Tue, 2016-05-31 18:48
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
0
1,050 by engand93
Wed, 2019-03-27 02:43
Normal topic Help to understand docking results
by rtorquato » Fri, 2022-11-25 12:05
0
1,590 by rtorquato
Fri, 2022-11-25 12:05
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
6,777 by lzx32
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design files
by Wenithor » Thu, 2021-04-29 10:33
1
1,099 by rmoretti
Thu, 2021-04-29 10:44
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
4,072 by rmoretti
Mon, 2014-05-12 15:16
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
3,421 by tfliu
Mon, 2014-04-21 06:48
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,836 by nannemdp
Thu, 2019-04-25 07:58
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
2,564 by smlewis
Mon, 2014-04-21 06:47
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
5,139 by rmoretti
Mon, 2014-04-21 06:47
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,956 by smlewis
Mon, 2014-04-21 06:48
Hot topic homology modeling with end extension
by fred » Mon, 2012-10-08 14:19
19
18,267 by xpzhang
Mon, 2014-04-21 06:47
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
3,008 by jharamesh
Sat, 2015-08-08 19:51
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
4,552 by pdbb
Mon, 2014-04-21 06:47
Normal topic Homology Modeling-no PDB output
by jlawrie » Wed, 2020-08-12 06:30
2
1,948 by jlawrie
Wed, 2020-08-12 08:56
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
2,152 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic Homology Modelling with cofactors
by Derek Smith » Thu, 2015-07-09 08:24
3
4,706 by Derek Smith
Wed, 2016-02-03 05:47
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
5,938 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How can I model ligands in comparative modeling
by Morrian_Lynn » Thu, 2020-02-20 09:57
1
1,338 by danpf
Fri, 2020-02-21 17:05
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
8,013 by lanselibai
Wed, 2014-11-12 11:17
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