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Rosetta 3 - Applications
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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2,411 |
by dgront Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
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5,031 |
by yarovoy Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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2,651 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,174 |
by alex Sun, 2017-02-19 08:12 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
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7,891 |
by smlewis Wed, 2016-08-17 07:56 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
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2,456 |
by exchhattu Mon, 2014-04-21 06:47 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
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1,390 |
by David Hoover Mon, 2014-04-21 06:47 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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3,412 |
by gw Mon, 2014-04-21 06:47 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
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9,404 |
by starone Fri, 2016-06-24 18:29 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
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2,472 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,108 |
by achambe Mon, 2016-01-04 11:26 |
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Garbled Ligands from docking_protocol by skovacs » Tue, 2011-12-20 07:55 |
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14,233 |
by skovacs Mon, 2014-04-21 06:47 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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389 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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437 |
by chenna Wed, 2021-04-28 07:18 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
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472 |
by chenna Mon, 2021-04-12 22:08 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,147 |
by jrcf Mon, 2015-10-05 21:32 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
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2,796 |
by deltag Mon, 2014-04-21 06:47 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
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1,345 |
by smlewis Wed, 2016-03-09 04:11 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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724 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
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153 |
by alonwenger Sat, 2021-12-18 12:32 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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1,768 |
by smlewis Tue, 2017-08-15 23:19 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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384 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,179 |
by lanselibai Tue, 2014-11-11 04:42 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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1,218 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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3,392 |
by jessye Fri, 2017-11-03 20:15 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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3,239 |
by protos_heis Tue, 2014-08-05 12:47 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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734 |
by tylerborrman Tue, 2021-02-09 16:33 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
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1,361 |
by smlewis Thu, 2015-10-22 08:04 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
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1,286 |
by Sandy Tue, 2016-05-31 18:48 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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567 |
by engand93 Wed, 2019-03-27 02:43 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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4,838 |
by lzx32 Mon, 2014-04-21 06:47 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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339 |
by rmoretti Thu, 2021-04-29 10:44 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,005 |
by rmoretti Mon, 2014-05-12 15:16 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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2,572 |
by tfliu Mon, 2014-04-21 06:48 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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1,007 |
by nannemdp Thu, 2019-04-25 07:58 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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1,918 |
by smlewis Mon, 2014-04-21 06:47 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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3,923 |
by rmoretti Mon, 2014-04-21 06:47 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
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2,367 |
by smlewis Mon, 2014-04-21 06:48 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
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13,721 |
by xpzhang Mon, 2014-04-21 06:47 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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2,175 |
by jharamesh Sat, 2015-08-08 19:51 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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3,639 |
by pdbb Mon, 2014-04-21 06:47 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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840 |
by jlawrie Wed, 2020-08-12 08:56 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,517 |
by bernhardcl Tue, 2015-08-11 09:11 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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3,380 |
by Derek Smith Wed, 2016-02-03 05:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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4,581 |
by rmoretti Mon, 2014-04-21 06:47 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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638 |
by danpf Fri, 2020-02-21 17:05 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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5,766 |
by lanselibai Wed, 2014-11-12 11:17 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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1,363 |
by happycaapi Tue, 2021-06-29 15:35 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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2,669 |
by ahonegger Mon, 2014-05-12 09:08 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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4,016 |
by wangyr Mon, 2014-04-21 06:47 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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by JackMaguire Fri, 2019-08-16 07:41 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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379 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,501 |
by rmoretti Thu, 2015-08-06 08:57 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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829 |
by smlewis Tue, 2019-09-24 12:43 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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2,059 |
by sn Thu, 2017-04-20 21:43 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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658 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
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2,491 |
by MajorID Mon, 2014-04-21 06:47 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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754 |
by smlewis Mon, 2019-09-16 12:22 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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by Wang Zhe Wed, 2021-12-08 10:07 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,456 |
by lanselibai Wed, 2015-01-21 02:40 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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2,282 |
by smlewis Mon, 2014-04-21 06:47 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
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1,526 |
by jadolfbr Fri, 2020-07-24 07:24 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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1,671 |
by danpf Tue, 2020-05-12 10:58 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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1,379 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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844 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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How to define pi-pi stacking in cst file? by lzx32 » Mon, 2011-07-04 23:47 |
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6,386 |
by lzx32 Mon, 2014-04-21 06:47 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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814 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
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2,639 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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2,219 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,156 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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5,402 |
by attesor Wed, 2017-06-14 07:32 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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1,621 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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4,296 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
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890 |
by aloshbau Fri, 2020-01-10 16:48 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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813 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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716 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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1,407 |
by rmoretti Wed, 2019-09-18 10:21 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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1,480 |
by Danielsebas Wed, 2019-09-11 00:44 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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2,751 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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10,346 |
by rmoretti Fri, 2015-09-11 13:27 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,145 |
by lanselibai Wed, 2014-10-15 03:52 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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3,615 |
by cossio Mon, 2015-01-19 07:10 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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2,395 |
by rmoretti Tue, 2017-10-10 09:58 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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273 |
by vmulligan Thu, 2021-06-24 13:23 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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1,757 |
by tevang Mon, 2014-04-21 06:47 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
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2,332 |
by rmoretti Thu, 2018-06-28 12:44 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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2,521 |
by felipet Wed, 2014-07-02 07:26 |
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how to repacking loop while freezing other residues? by jfhuang » Wed, 2012-07-25 06:59 |
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6,757 |
by jfhuang Mon, 2014-04-21 06:47 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
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1,671 |
by aep Fri, 2016-07-01 06:54 |
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how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
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554 |
by xinmiaohe Mon, 2019-08-26 09:38 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
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1,901 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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1,074 |
by lanselibai Tue, 2020-05-12 20:25 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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1,703 |
by msardejani Mon, 2016-12-12 17:48 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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547 |
by ssrb Mon, 2020-06-22 13:12 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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2,733 |
by lanselibai Mon, 2014-10-06 15:30 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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1,702 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
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8,200 |
by smlewis Mon, 2014-04-21 06:47 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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388 |
by everyday847 Sun, 2021-04-04 12:48 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
5 |
1,294 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
2,441 |
by rmoretti Sat, 2015-07-11 13:38 |
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