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Rosetta 3 - Applications
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Topic / Topic starter |
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Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
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907 |
by Corvin Tue, 2021-11-16 07:22 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
1,112 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
6 |
7,028 |
by Aben Tue, 2023-04-18 01:31 |
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Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,933 |
by glemmon Mon, 2014-04-21 06:47 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
2,350 |
by dyu Thu, 2017-09-28 18:54 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,743 |
by mdidonato Wed, 2014-06-04 14:55 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,818 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
15,185 |
by Basantab Mon, 2014-04-21 06:47 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
4,052 |
by RMJ Mon, 2014-04-21 06:47 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,623 |
by rmoretti Thu, 2017-04-20 13:59 |
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problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
8,813 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
4,178 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,889 |
by mumdonar Mon, 2014-04-21 06:48 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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1,200 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
3,766 |
by rmoretti Fri, 2020-07-10 09:59 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
2,185 |
by rmoretti Thu, 2014-10-23 13:55 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
5,885 |
by xfliu Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,584 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
2,419 |
by smlewis Mon, 2014-04-21 06:47 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
3,202 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,832 |
by jljbbc Mon, 2014-04-21 06:47 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
1,911 |
by rmoretti Wed, 2018-11-21 15:31 |
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problem in using "zinc_site_redesign" tool by Isomerase » Mon, 2022-03-28 01:19 |
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772 |
by Isomerase Mon, 2022-03-28 01:19 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
2,144 |
by rmoretti Thu, 2014-08-28 09:42 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
1 |
2,380 |
by rmoretti Fri, 2016-10-14 08:42 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
7,649 |
by linucks Mon, 2016-06-20 12:02 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
7,831 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
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3,784 |
by rmoretti Mon, 2014-04-21 06:48 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
4 |
2,650 |
by Corvin Wed, 2020-11-25 02:58 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
3,354 |
by sacch Mon, 2014-04-21 06:47 |
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Prepacking a macrocycle for docking / preserving cyclization by almeida85 » Thu, 2022-09-08 06:54 |
0 |
855 |
by almeida85 Thu, 2022-09-08 06:54 |
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prepack - residue count fails by xfradera » Fri, 2023-01-27 06:36 |
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1,217 |
by xfradera Fri, 2023-01-27 06:36 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,564 |
by jadolfbr Fri, 2018-11-09 14:28 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
3,097 |
by franfdez Mon, 2014-07-28 01:04 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,736 |
by kxiao Thu, 2014-06-05 08:37 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
1 |
1,238 |
by rmoretti Fri, 2020-11-27 10:47 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,469 |
by G Mustafa Wed, 2018-10-17 05:41 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
5,935 |
by felipet Wed, 2015-02-11 05:13 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
4,454 |
by matteoferla Tue, 2018-10-30 02:54 |
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pMHC modelling by Roberto » Thu, 2022-08-04 07:11 |
0 |
814 |
by Roberto Thu, 2022-08-04 07:11 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
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3,242 |
by ic3reyes Mon, 2014-04-21 06:47 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
1,464 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
1 |
2,053 |
by rmoretti Fri, 2017-09-15 13:11 |
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PIPER-FlexPepDock [commercial user] by Skelly » Tue, 2024-01-23 16:14 |
0 |
321 |
by Skelly Tue, 2024-01-30 14:08 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,518 |
by attesor Mon, 2014-06-16 07:34 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
3,487 |
by sn Mon, 2017-03-06 10:03 |
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Per residue total score by johnnytam100 » Wed, 2022-07-13 21:57 |
0 |
783 |
by johnnytam100 Wed, 2022-07-13 21:57 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
4,253 |
by rmoretti Wed, 2015-09-02 12:33 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,681 |
by shaunmk Mon, 2015-04-27 02:33 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
4,459 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
1,281 |
by almeida85 Mon, 2022-05-02 05:05 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
0 |
857 |
by Soler Wed, 2020-09-16 19:08 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
1 |
1,249 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
3,580 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
0 |
1,042 |
by Soler Fri, 2020-09-18 08:09 |
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Pepspec - sequence sampling by almeida85 » Thu, 2022-06-23 04:05 |
0 |
874 |
by almeida85 Thu, 2022-06-23 05:50 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,691 |
by loreseeker Mon, 2014-04-21 06:47 |
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PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,840 |
by Andre Serobian Wed, 2020-07-08 04:44 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,948 |
by rmoretti Mon, 2014-04-21 06:48 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
1,534 |
by smlewis Fri, 2018-07-27 13:32 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
6,524 |
by brspurri Mon, 2014-04-21 06:47 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
1 |
1,412 |
by rmoretti Mon, 2019-08-26 12:17 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
0 |
780 |
by code_Monkey Mon, 2021-04-05 10:40 |
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Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
0 |
771 |
by georg Thu, 2021-04-08 09:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
1,822 |
by rmoretti Thu, 2017-05-18 13:51 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
4,250 |
by smlewis Mon, 2014-04-21 06:47 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
9,565 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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Params for a stapled helix peptide by e3lm » Thu, 2022-05-26 12:55 |
0 |
903 |
by e3lm Thu, 2022-05-26 12:55 |
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parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
7,764 |
by rmoretti Mon, 2014-04-21 06:47 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
5,074 |
by Anonymous Mon, 2014-04-21 06:47 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
3,145 |
by smlewis Fri, 2017-01-27 07:20 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
1 |
2,140 |
by rmoretti Mon, 2017-07-03 09:17 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
7,068 |
by rmoretti Mon, 2014-04-21 06:47 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
5,742 |
by rmoretti Mon, 2014-04-21 06:47 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
1 |
2,361 |
by rmoretti Mon, 2015-02-09 12:33 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
1,622 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
9,314 |
by ast Thu, 2014-03-13 07:17 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
3,005 |
by rmoretti Thu, 2014-03-13 08:04 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,906 |
by danpf Fri, 2020-02-21 18:32 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
1,960 |
by bjharris Thu, 2020-07-02 11:09 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
1 |
1,157 |
by rmoretti Fri, 2022-09-23 09:38 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
2,684 |
by smlewis Mon, 2014-04-21 06:47 |
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Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
2 |
195 |
by mandar Tue, 2024-03-12 23:07 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,877 |
by amorin Fri, 2021-02-12 08:53 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
4,248 |
by fred Mon, 2014-04-21 06:47 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
1,765 |
by chrisHKL Wed, 2020-03-04 10:49 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
2,095 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
4,116 |
by jrcf Mon, 2015-09-21 11:10 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
7,656 |
by e3lm Thu, 2022-05-26 12:51 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
0 |
425 |
by top-gun98 Wed, 2023-06-07 17:19 |
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nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
2 |
346 |
by lei Wed, 2023-11-22 06:23 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,541 |
by jrcf Fri, 2016-02-12 16:42 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
2,074 |
by rmoretti Fri, 2016-06-17 10:24 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
12,260 |
by rmoretti Fri, 2016-06-17 10:22 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,867 |
by jarod Mon, 2014-04-21 06:47 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,930 |
by rmoretti Tue, 2017-04-25 06:41 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
1,000 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
9,112 |
by helenah Thu, 2020-10-08 05:29 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,958 |
by smlewis Mon, 2018-10-15 08:42 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
6,396 |
by Anonymous Mon, 2014-04-21 06:47 |
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