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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
1,580 by lanselibai
Fri, 2019-12-27 09:38
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,582 by petrikigor
Mon, 2014-04-21 06:47
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,584 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,588 by smlewis
Mon, 2017-02-06 06:57
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,589 by benhardy
Sun, 2020-09-20 11:15
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,597 by smlewis
Wed, 2016-03-09 04:11
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,597 by nannemdp
Sun, 2020-05-24 14:46
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,598 by rmoretti
Mon, 2017-09-04 10:33
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
1,605 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,608 by smlewis
Thu, 2016-12-08 15:50
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,611 by rmoretti
Mon, 2017-05-15 08:54
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
1,615 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,631 by rmoretti
Fri, 2017-04-21 07:41
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
1,632 by rmoretti
Fri, 2017-09-15 13:11
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,634 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,645 by Derek
Wed, 2016-04-27 01:31
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,647 by rmoretti
Tue, 2015-11-10 11:10
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,649 by smlewis
Thu, 2015-10-22 08:04
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,663 by smlewis
Thu, 2020-05-21 21:05
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,666 by danielles
Mon, 2014-04-21 06:47
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
1,671 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
1,675 by danpf
Mon, 2019-09-16 09:51
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
1,675 by Corvin
Wed, 2020-11-25 02:58
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,686 by rmoretti
Fri, 2015-01-02 11:06
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,690 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,692 by rmoretti
Fri, 2016-06-17 10:24
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
1,698 by YuFei
Sat, 2020-05-30 00:12
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,700 by smlewis
Tue, 2017-02-21 07:58
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,702 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
1,709 by jkleman
Tue, 2020-05-19 15:02
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
1,713 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
1,713 by rmoretti
Mon, 2017-07-03 09:17
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
1,716 by haom
Tue, 2020-06-16 05:55
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
1,717 by rmoretti
Wed, 2019-07-10 09:22
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
1,717 by rmoretti
Thu, 2017-04-27 07:10
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
1,726 by nc-ring
Tue, 2021-05-04 12:26
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
1,728 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
1,728 by jlapin
Wed, 2018-08-01 07:15
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
1,732 by sam_dc
Mon, 2021-04-12 07:24
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,738 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,738 by smlewis
Mon, 2015-06-08 06:35
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,742 by MajorID
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
1,747 by rmoretti
Fri, 2018-11-23 07:59
Normal topic "Make_fragments.pl" can't connect to dependencies links
by Corvin » Wed, 2019-09-04 23:54
2
1,751 by Corvin
Thu, 2019-10-10 01:12
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,763 by rmoretti
Sat, 2017-04-15 13:30
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,767 by rmoretti
Tue, 2018-01-30 07:51
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,770 by rmoretti
Tue, 2016-07-12 08:56
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
1,771 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
1,773 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
1,773 by rmoretti
Thu, 2015-08-06 08:57
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
1,780 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
1,783 by He Xiao
Sun, 2021-04-11 19:29
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
1,787 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,789 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,789 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
1,798 by Corvin
Wed, 2019-06-12 00:04
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,809 by dnamkr
Mon, 2019-12-30 11:43
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
1,809 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
1,811 by tsztain
Mon, 2019-02-18 09:55
Normal topic Instructing design scripts to use noncanonical AA instead of canonical
by zcrook » Tue, 2014-11-25 10:43
1
1,813 by rmoretti
Wed, 2014-11-26 07:51
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
1,814 by mags33
Wed, 2019-11-06 09:35
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,816 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,818 by rmoretti
Fri, 2016-04-08 07:39
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
1,818 by rmoretti
Tue, 2015-01-13 07:44
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
1,828 by Pernille
Fri, 2014-06-20 00:17
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
1,836 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
1,836 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
1,841 by rmoretti
Thu, 2016-06-23 10:55
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
1,843 by rmoretti
Thu, 2014-10-23 13:55
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,844 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
1,847 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,848 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,853 by rmoretti
Mon, 2015-05-25 12:37
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
1,859 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,859 by rmoretti
Wed, 2016-02-24 14:39
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
1,860 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,860 by everyday847
Sun, 2014-09-28 21:16
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
1,868 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
1,871 by rmoretti
Tue, 2014-11-18 09:10
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,872 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
1,876 by dyu
Thu, 2017-09-28 18:54
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,880 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
1,889 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
1,890 by rmoretti
Fri, 2015-07-03 14:41
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,890 by sgourn
Tue, 2015-08-18 18:25
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
1,903 by dnamkr
Thu, 2019-12-26 10:22
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,906 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
1,906 by marinok
Mon, 2020-05-11 12:48
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
1,909 by rmoretti
Tue, 2015-11-24 16:16
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,920 by smlewis
Mon, 2017-02-06 20:46
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
1,923 by rmoretti
Fri, 2016-06-17 10:15
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
1,928 by maruhuang
Thu, 2019-09-26 18:52
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,928 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
1,938 by ziruiw
Fri, 2021-04-30 12:01
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
1,946 by brspurri
Tue, 2020-08-18 09:57
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
1,946 by smlewis
Tue, 2017-02-21 14:10
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
1,947 by smlewis
Fri, 2017-06-16 07:35
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,951 by rmoretti
Fri, 2015-10-02 12:30
Normal topic Question about running scallo
by danbo » Mon, 2021-11-29 23:25
8
1,951 by danbo
Wed, 2021-12-22 23:51
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
1,954 by rmoretti
Mon, 2014-05-26 09:29
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