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Rosetta 3 - Applications
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
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1,442 |
by jlapin Wed, 2018-08-01 07:15 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
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1,443 |
by smlewis Thu, 2015-10-22 08:04 |
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Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
1,446 |
by johnnytam100 Fri, 2019-08-16 00:20 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,454 |
by Derek Wed, 2016-04-27 01:31 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
0 |
1,455 |
by David Hoover Mon, 2014-04-21 06:47 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
4 |
1,456 |
by marinok Mon, 2020-05-11 12:48 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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1,459 |
by Corvin Wed, 2019-06-12 00:04 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
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1,462 |
by rmoretti Tue, 2015-11-10 11:10 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
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1,463 |
by petrikigor Mon, 2014-04-21 06:47 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
1 |
1,471 |
by rmoretti Fri, 2018-11-23 07:59 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
1 |
1,474 |
by rmoretti Mon, 2017-07-03 09:17 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
1,483 |
by tsztain Mon, 2019-02-18 09:55 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
1,484 |
by brspurri Tue, 2020-08-18 09:57 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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1,488 |
by daniloboskovic Fri, 2019-11-08 08:27 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
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1,493 |
by rmoretti Fri, 2016-06-17 10:24 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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1,497 |
by mags33 Wed, 2019-11-06 09:35 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,498 |
by Danielsebas Thu, 2019-09-05 03:35 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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1,499 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
1,503 |
by rmoretti Fri, 2015-01-02 11:06 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
1 |
1,515 |
by rmoretti Thu, 2017-04-27 07:10 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
1,530 |
by dnamkr Mon, 2019-12-30 11:43 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
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1,532 |
by rmoretti Sat, 2017-04-15 13:30 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
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1,536 |
by rmoretti Tue, 2015-12-15 09:48 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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1,537 |
by maruhuang Thu, 2019-09-26 18:52 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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1,539 |
by smlewis Mon, 2015-06-08 06:35 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
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1,545 |
by danielles Mon, 2014-04-21 06:47 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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1,550 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
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1,555 |
by rmoretti Tue, 2018-01-30 07:51 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
3 |
1,566 |
by happycaapi Tue, 2021-06-29 15:35 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
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1,569 |
by rmoretti Tue, 2016-07-12 08:56 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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1,575 |
by rmoretti Wed, 2019-09-18 10:21 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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1,577 |
by ssrb Fri, 2020-08-14 09:18 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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1,580 |
by rmoretti Thu, 2014-08-28 09:42 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,582 |
by rmoretti Thu, 2015-08-06 08:57 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,592 |
by bernhardcl Tue, 2015-08-11 09:11 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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1,597 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,600 |
by rmoretti Wed, 2015-09-09 12:01 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
1,604 |
by Corvin Tue, 2019-08-27 00:46 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
1 |
1,606 |
by rmoretti Tue, 2018-01-16 07:24 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,610 |
by rmoretti Fri, 2016-09-09 07:47 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
1,612 |
by dnamkr Thu, 2019-12-26 10:22 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
1,614 |
by rmoretti Fri, 2016-04-08 07:39 |
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cluster,how to get the statistic data by MajorID » Wed, 2011-06-08 09:20 |
0 |
1,619 |
by MajorID Mon, 2014-04-21 06:47 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
1,622 |
by dyu Thu, 2017-09-28 18:54 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
1 |
1,623 |
by rmoretti Wed, 2014-11-26 07:51 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
1,628 |
by aloshbau Mon, 2021-03-01 20:06 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
1 |
1,633 |
by rmoretti Thu, 2016-06-23 10:55 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
1,634 |
by Pernille Fri, 2014-06-20 00:17 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
1 |
1,643 |
by rmoretti Tue, 2015-01-13 07:44 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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1,646 |
by Astghik Thu, 2020-10-15 00:48 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
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1,648 |
by rmoretti Mon, 2015-05-25 12:37 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
1,652 |
by rmoretti Sun, 2014-07-27 10:48 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
2 |
1,654 |
by Danielsebas Wed, 2019-09-11 00:44 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
1,659 |
by rmoretti Thu, 2014-10-23 13:55 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
1,660 |
by rmoretti Fri, 2016-10-14 08:56 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
1 |
1,661 |
by rmoretti Wed, 2016-02-24 14:39 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
0 |
1,664 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
1,667 |
by sgourn Tue, 2015-08-18 18:25 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
1,667 |
by gszwabowski Wed, 2019-06-26 10:25 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
1 |
1,668 |
by rmoretti Tue, 2014-11-18 09:10 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
1,669 |
by danpf Fri, 2020-02-21 18:32 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
1,674 |
by jadolfbr Wed, 2020-05-06 11:37 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
1,674 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
1,675 |
by smlewis Fri, 2017-06-16 07:35 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
6 |
1,677 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
1 |
1,677 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
2 |
1,677 |
by rmoretti Thu, 2018-09-20 09:19 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
1 |
1,688 |
by everyday847 Sun, 2014-09-28 21:16 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
1,690 |
by rmoretti Fri, 2015-07-03 14:41 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
2 |
1,691 |
by cossio Sun, 2018-03-11 09:12 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
1,699 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
1 |
1,701 |
by rmoretti Tue, 2015-11-24 16:16 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
1 |
1,707 |
by smlewis Mon, 2017-02-06 20:46 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
1,708 |
by brspurri Wed, 2020-06-03 13:20 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
1,718 |
by mwfranklin Mon, 2016-07-25 11:49 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
1 |
1,720 |
by jadolfbr Fri, 2014-10-31 08:45 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
1 |
1,729 |
by smlewis Tue, 2017-02-21 14:10 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
1 |
1,730 |
by rmoretti Fri, 2016-06-17 10:15 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
1,740 |
by smlewis Wed, 2018-12-12 16:51 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
1 |
1,744 |
by rmoretti Wed, 2016-11-30 07:46 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
1,747 |
by smlewis Fri, 2018-09-14 10:34 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
2 |
1,750 |
by ashu4487 Sun, 2016-12-11 19:03 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
1,753 |
by rmoretti Sat, 2015-10-31 08:57 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
1,754 |
by rmoretti Mon, 2017-03-13 08:01 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
1,756 |
by rmoretti Sat, 2015-06-20 20:07 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
1 |
1,760 |
by rmoretti Mon, 2014-05-26 09:29 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
1,766 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
1 |
1,770 |
by rmoretti Mon, 2015-05-25 12:30 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
2 |
1,773 |
by aep Fri, 2016-07-01 06:54 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
1 |
1,774 |
by rmoretti Fri, 2015-10-02 12:30 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
1 |
1,784 |
by rmoretti Fri, 2016-10-14 08:42 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
5 |
1,793 |
by jadolfbr Fri, 2020-07-24 07:24 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
1 |
1,795 |
by rmoretti Wed, 2017-01-11 13:00 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
1,800 |
by esozdemir Thu, 2019-06-13 12:19 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
1 |
1,805 |
by smlewis Mon, 2014-04-21 06:47 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
1 |
1,808 |
by smlewis Mon, 2014-07-07 11:58 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
1,808 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
1,810 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
1 |
1,813 |
by rmoretti Mon, 2015-02-09 12:33 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
1,822 |
by msardejani Mon, 2016-12-12 17:48 |
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