You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,691 |
by loreseeker Mon, 2014-04-21 06:47 |
|
|
cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
3,690 |
by cossio Fri, 2018-10-12 04:43 |
|
|
Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,690 |
by johnnytam100 Thu, 2019-04-25 19:28 |
|
|
Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,687 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,682 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,681 |
by elpipasp Thu, 2023-10-19 04:37 |
|
|
RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,681 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,675 |
by dee2711453 Fri, 2016-03-11 21:32 |
|
|
Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,670 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
|
|
example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,667 |
by maxebert Mon, 2014-04-21 06:47 |
|
|
Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,657 |
by cn Mon, 2014-04-21 06:47 |
|
|
How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
3,652 |
by aloshbau Mon, 2021-03-01 20:06 |
|
|
Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,651 |
by jennifer Fri, 2015-03-27 05:56 |
|
|
Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
3,638 |
by danbo Wed, 2021-12-22 23:51 |
|
|
protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,632 |
by ajasja Wed, 2019-05-15 15:40 |
|
|
Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,628 |
by johnnytam100 Sun, 2019-03-03 23:42 |
|
|
Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,626 |
by rmoretti Thu, 2017-04-20 13:59 |
|
|
How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
3,622 |
by lanselibai Mon, 2014-10-06 15:30 |
|
|
error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,616 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,615 |
by alexn Mon, 2014-04-21 06:47 |
|
|
Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
1 |
3,599 |
by nannemdp Mon, 2022-11-28 09:39 |
|
|
RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
3,596 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
|
|
problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,584 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
3,584 |
by Pappmaschee Thu, 2020-12-17 02:24 |
|
|
Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,582 |
by Ashafix Mon, 2014-04-21 06:48 |
|
|
flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,569 |
by michael_luntan Mon, 2014-04-21 06:47 |
|
|
Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,556 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,542 |
by jrcf Fri, 2016-02-12 16:42 |
|
|
Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
3,538 |
by lanselibai Mon, 2014-10-13 10:10 |
|
|
Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
3,531 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
|
|
How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,521 |
by ahonegger Mon, 2014-05-12 09:08 |
|
|
PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,518 |
by attesor Mon, 2014-06-16 07:34 |
|
|
Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,517 |
by deltag Mon, 2014-04-21 06:47 |
|
|
rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
3,513 |
by ladimafakher Thu, 2018-11-01 03:47 |
|
|
Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,499 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
3,488 |
by sn Mon, 2017-03-06 10:03 |
|
|
Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
3,485 |
by rmoretti Mon, 2019-11-04 13:56 |
|
|
The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
3,485 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
|
|
Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
3,480 |
by AJVincelli Sun, 2018-11-25 11:29 |
|
|
modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
3,479 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
5 |
3,468 |
by dantimatter Wed, 2019-10-30 09:43 |
|
|
Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
3,468 |
by brspurri Thu, 2017-06-01 10:58 |
|
|
JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
3,462 |
by Wizard Sun, 2015-04-26 22:36 |
|
|
Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
3,449 |
by Loki01 Thu, 2018-04-12 08:28 |
|
|
Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
6 |
3,443 |
by rmoretti Tue, 2020-07-14 10:54 |
|
|
relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,443 |
by rmoretti Mon, 2023-02-06 15:06 |
|
|
ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
3,441 |
by rmoretti Mon, 2014-05-12 08:25 |
|
|
ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
2 |
3,430 |
by krlitros87 Wed, 2014-10-22 09:31 |
|
|
do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
2 |
3,409 |
by fred Mon, 2014-04-21 06:48 |
|
|
ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
3,409 |
by malkeet.singh Mon, 2018-05-21 04:26 |
|
|
dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
3,393 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,384 |
by yperez Mon, 2014-04-21 06:47 |
|
|
kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
3,381 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
5 |
3,380 |
by danpf Tue, 2020-05-12 10:58 |
|
|
RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,376 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
3,374 |
by subha Fri, 2018-04-20 12:49 |
|
|
clustering by ays » Tue, 2014-09-30 08:26 |
2 |
3,368 |
by rmoretti Mon, 2014-10-06 16:00 |
|
|
high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
3,368 |
by tfliu Mon, 2014-04-21 06:48 |
|
|
ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,365 |
by ahonegger Fri, 2014-06-06 09:31 |
|
|
select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,363 |
by ast Mon, 2014-04-21 06:48 |
|
|
How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
3,362 |
by rmoretti Wed, 2017-03-01 13:10 |
|
|
Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
3,360 |
by rmoretti Fri, 2019-03-29 12:25 |
|
|
prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
3,354 |
by sacch Mon, 2014-04-21 06:47 |
|
|
cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
3,346 |
by cossio Fri, 2018-05-18 09:51 |
|
|
How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
2 |
3,343 |
by sn Thu, 2017-04-20 21:43 |
|
|
DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
3,339 |
by shadrinams Wed, 2018-03-14 07:46 |
|
|
Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
3,337 |
by rmoretti Thu, 2017-08-24 11:00 |
|
|
score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
1 |
3,327 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
3,327 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
|
|
How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
3,322 |
by MajorID Mon, 2014-04-21 06:47 |
|
|
Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,320 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
3,318 |
by rmoretti Wed, 2018-03-07 08:44 |
|
|
The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
3,317 |
by asbelx Mon, 2018-06-18 22:34 |
|
|
Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
3,317 |
by smlewis Wed, 2017-02-15 07:43 |
|
|
FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
3,312 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
|
|
how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
2 |
3,309 |
by felipet Wed, 2014-07-02 07:26 |
|
|
Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
5 |
3,300 |
by vmulligan Fri, 2020-04-10 02:54 |
|
|
Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
3,298 |
by ashu4487 Mon, 2018-07-16 19:24 |
|
|
Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
3,296 |
by Payne Tue, 2022-06-21 07:25 |
|
|
Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
3,286 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
3,286 |
by ziruiw Fri, 2021-04-30 12:01 |
|
|
Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
3,284 |
by smlewis Mon, 2019-09-23 11:42 |
|
|
very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
3,282 |
by attesor Tue, 2015-11-17 07:36 |
|
|
How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
3,281 |
by rmoretti Sat, 2015-07-11 13:38 |
|
|
refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,275 |
by banshee Mon, 2016-09-12 23:41 |
|
|
RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
3,271 |
by rmoretti Thu, 2017-02-02 09:02 |
|
|
The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
3,270 |
by rmoretti Thu, 2018-06-28 12:58 |
|
|
Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,270 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
3,269 |
by johnnytam100 Tue, 2019-05-21 20:48 |
|
|
Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
6 |
3,261 |
by jadolfbr Sun, 2020-12-06 17:41 |
|
|
Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
3,251 |
by chelsell Wed, 2014-10-08 12:25 |
|
|
Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
1 |
3,251 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
3,243 |
by ic3reyes Mon, 2014-04-21 06:47 |
|
|
Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
3,232 |
by rmoretti Fri, 2016-04-29 09:21 |
|
|
Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
3,227 |
by smlewis Mon, 2014-05-12 08:32 |
|
|
how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
5 |
3,227 |
by xinmiaohe Tue, 2019-08-27 08:37 |
|
|
Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
7 |
3,216 |
by yels Wed, 2021-03-31 18:31 |
|
|
Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
3,214 |
by cossio Tue, 2015-09-15 12:48 |
|
|
Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
5 |
3,208 |
by Astghik Thu, 2020-10-15 00:48 |
|
|
Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
3,206 |
by rmoretti Fri, 2015-01-02 11:45 |
Log in to post new content in the forum.
