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Rosetta 3 - Applications

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Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,554 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
2,551 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
2,550 by krlitros87
Wed, 2014-10-22 09:31
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
2,549 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
2,540 by attesor
Mon, 2014-06-16 07:34
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
2,539 by sacch
Mon, 2014-04-21 06:47
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
2,525 by dee2711453
Fri, 2016-03-11 21:32
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
2,508 by felipet
Wed, 2014-07-02 07:26
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
2,506 by smlewis
Wed, 2017-12-13 09:54
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
2,502 by Wizard
Sun, 2015-04-26 22:36
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
2,499 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
2,495 by subha
Fri, 2017-06-09 15:42
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,493 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
2,489 by tong
Sun, 2018-06-24 23:30
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,487 by jrcf
Fri, 2016-02-12 16:42
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
2,485 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
2,480 by Yero
Thu, 2019-07-18 01:39
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,477 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,477 by rmoretti
Fri, 2016-04-29 09:21
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
2,475 by jhm13c
Thu, 2017-03-02 12:01
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
2,474 by MajorID
Mon, 2014-04-21 06:47
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,468 by rmoretti
Mon, 2014-04-21 06:48
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
2,467 by jrporter
Wed, 2017-07-05 06:30
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
2,464 by rmoretti
Mon, 2014-10-06 16:00
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
2,462 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
2,456 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,454 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,444 by rmoretti
Thu, 2017-04-20 13:59
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
2,441 by lanselibai
Wed, 2015-01-21 02:40
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
2,440 by exchhattu
Mon, 2014-04-21 06:47
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
2,440 by amorin
Sat, 2021-02-27 20:29
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,427 by jharamesh
Mon, 2014-11-03 12:50
Normal topic How to use Rosetta to DISCARD a protein-protein docking interface?
by cossio » Tue, 2015-05-26 06:24
2
2,425 by rmoretti
Sat, 2015-07-11 13:38
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,422 by brspurri
Sat, 2017-08-26 07:08
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,421 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
1
2,417 by everyday847
Wed, 2017-05-17 20:03
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
2,413 by ahonegger
Fri, 2014-06-06 09:31
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,411 by lchen
Mon, 2014-04-21 06:47
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
2,400 by chelsell
Wed, 2014-10-08 12:25
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
2,400 by dgront
Mon, 2014-04-21 06:47
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
2,386 by bjharris
Sun, 2020-08-23 14:03
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
2,376 by rmoretti
Tue, 2017-10-10 09:58
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,374 by smlewis
Mon, 2014-04-21 06:47
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,361 by smlewis
Mon, 2014-04-21 06:48
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,353 by smlewis
Mon, 2014-05-12 08:32
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,326 by cossio
Mon, 2015-01-19 07:14
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,321 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
2,319 by rmoretti
Fri, 2018-11-23 11:23
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
2,317 by mpacella
Mon, 2014-04-21 06:47
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,312 by rmoretti
Tue, 2016-01-05 08:35
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,312 by rmoretti
Mon, 2014-08-04 14:51
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
2,303 by rmoretti
Thu, 2018-06-28 12:44
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,303 by ytao
Mon, 2014-04-21 06:47
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,298 by cossio
Tue, 2015-09-15 12:48
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
2,291 by brspurri
Thu, 2017-06-01 10:58
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,288 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,284 by rmoretti
Fri, 2015-09-04 10:25
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,284 by attesor
Tue, 2015-11-17 07:36
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,281 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,280 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
2,280 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,279 by smlewis
Mon, 2014-04-21 06:47
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,277 by jarod
Mon, 2014-04-21 06:47
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
2,272 by rmoretti
Fri, 2019-03-29 12:25
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
2,268 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
2,261 by franfdez
Mon, 2014-07-28 01:04
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
2,254 by rmoretti
Thu, 2020-01-30 15:42
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
2,249 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,249 by mintseris
Wed, 2015-06-24 22:04
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
2,245 by banshee
Mon, 2016-09-12 23:41
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,243 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,239 by rmoretti
Mon, 2014-04-21 06:48
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,239 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,235 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,235 by rmoretti
Thu, 2017-02-02 09:02
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,230 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
2,229 by rayyoung
Thu, 2021-11-18 10:13
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,213 by Pernille
Wed, 2014-10-08 10:41
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,212 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
2,208 by lanselibai
Fri, 2014-10-17 03:36
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,208 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,204 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,197 by rmoretti
Thu, 2017-08-24 11:00
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,191 by rmoretti
Wed, 2017-03-01 13:10
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,189 by ronj
Mon, 2014-04-21 06:47
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,179 by smlewis
Wed, 2017-02-15 07:43
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,176 by hzhekova
Tue, 2018-01-16 10:31
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,172 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,165 by sn
Mon, 2017-03-06 10:03
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
2,161 by jharamesh
Sat, 2015-08-08 19:51
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
2,160 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
2,160 by lanselibai
Tue, 2014-11-11 04:42
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,159 by rmoretti
Tue, 2014-11-04 08:53
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,152 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,149 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,141 by nawsad
Mon, 2014-04-21 06:48
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
2,140 by ashu4487
Mon, 2018-07-16 19:24
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
2,137 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,137 by rmoretti
Wed, 2015-03-25 11:33
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