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Rosetta 3 - Applications
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
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3,515 |
by rmoretti Tue, 2016-07-12 09:05 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
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3,500 |
by maxebert Mon, 2014-04-21 06:47 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,492 |
by cn Mon, 2014-04-21 06:47 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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3,488 |
by rmoretti Fri, 2020-07-10 09:59 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
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3,473 |
by dee2711453 Fri, 2016-03-11 21:32 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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3,467 |
by alexn Mon, 2014-04-21 06:47 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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3,466 |
by jennifer Fri, 2015-03-27 05:56 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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3,449 |
by lanselibai Mon, 2014-10-06 15:30 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
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3,437 |
by smlewis Mon, 2014-04-21 06:47 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
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3,427 |
by Ashafix Mon, 2014-04-21 06:48 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,425 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,425 |
by michael_luntan Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
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3,423 |
by smlewis Mon, 2014-04-21 06:47 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
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3,419 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,404 |
by rmoretti Thu, 2017-04-20 13:59 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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3,394 |
by e3lm Tue, 2021-09-14 10:02 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,387 |
by rmoretti Mon, 2014-04-21 06:48 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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3,386 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,379 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
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3,377 |
by smlewis Mon, 2014-04-21 06:47 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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3,376 |
by lanselibai Mon, 2014-10-13 10:10 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
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3,374 |
by deltag Mon, 2014-04-21 06:47 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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3,369 |
by cossio Fri, 2018-10-12 04:43 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,367 |
by ahonegger Mon, 2014-05-12 09:08 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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3,355 |
by attesor Mon, 2014-06-16 07:34 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
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3,350 |
by jrcf Fri, 2016-02-12 16:42 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
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3,324 |
by ajasja Wed, 2019-05-15 15:40 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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3,306 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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3,289 |
by rmoretti Mon, 2014-05-12 08:25 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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3,274 |
by Wizard Sun, 2015-04-26 22:36 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
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3,272 |
by nannemdp Mon, 2022-11-28 09:39 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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3,268 |
by fred Mon, 2014-04-21 06:48 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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3,267 |
by krlitros87 Wed, 2014-10-22 09:31 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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3,266 |
by brspurri Thu, 2017-06-01 10:58 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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3,255 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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3,251 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
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3,251 |
by yperez Mon, 2014-04-21 06:47 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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3,249 |
by a_s_a Mon, 2014-04-21 06:47 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
4 |
3,241 |
by elpipasp Thu, 2023-10-19 04:37 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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3,241 |
by sn Mon, 2017-03-06 10:03 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
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3,228 |
by ladimafakher Thu, 2018-11-01 03:47 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,226 |
by tfliu Mon, 2014-04-21 06:48 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
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3,226 |
by mark.wilson Mon, 2014-04-21 06:47 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,224 |
by jadolfbr Mon, 2014-04-21 06:47 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
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3,215 |
by smlewis Mon, 2014-04-21 06:47 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,212 |
by rmoretti Mon, 2014-10-06 16:00 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
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3,209 |
by sacch Mon, 2014-04-21 06:47 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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3,208 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
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3,207 |
by ast Mon, 2014-04-21 06:48 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
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3,174 |
by MajorID Mon, 2014-04-21 06:47 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
2 |
3,173 |
by felipet Wed, 2014-07-02 07:26 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
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3,168 |
by smlewis Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
3,166 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
3,160 |
by Loki01 Thu, 2018-04-12 08:28 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
3,159 |
by rmoretti Fri, 2019-03-29 12:25 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
3,153 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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3,149 |
by ahonegger Fri, 2014-06-06 09:31 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
3,144 |
by exchhattu Mon, 2014-04-21 06:47 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
1 |
3,144 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
3,140 |
by aloshbau Mon, 2021-03-01 20:06 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
3,139 |
by subha Fri, 2018-04-20 12:49 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
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3,137 |
by ic3reyes Mon, 2014-04-21 06:47 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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3,136 |
by rmoretti Mon, 2019-11-04 13:56 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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3,126 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
3,125 |
by rmoretti Wed, 2017-03-01 13:10 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
3,117 |
by smlewis Wed, 2017-02-15 07:43 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
6 |
3,114 |
by rmoretti Tue, 2020-07-14 10:54 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
5 |
3,109 |
by dantimatter Wed, 2019-10-30 09:43 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
3,108 |
by rmoretti Thu, 2017-08-24 11:00 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
3,106 |
by chelsell Wed, 2014-10-08 12:25 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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3,106 |
by rmoretti Sat, 2015-07-11 13:38 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
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3,103 |
by ashu4487 Mon, 2018-07-16 19:24 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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3,097 |
by attesor Tue, 2015-11-17 07:36 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
3,096 |
by rmoretti Fri, 2016-04-29 09:21 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
3,096 |
by danbo Wed, 2021-12-22 23:51 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
3,091 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
3,091 |
by shadrinams Wed, 2018-03-14 07:46 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,087 |
by banshee Mon, 2016-09-12 23:41 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
3,086 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
3,071 |
by cossio Fri, 2018-05-18 09:51 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
1 |
3,070 |
by lanselibai Wed, 2015-01-21 02:40 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
3,068 |
by rmoretti Fri, 2015-01-02 11:45 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
3,064 |
by rmoretti Thu, 2017-02-02 09:02 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,059 |
by rmoretti Mon, 2023-02-06 15:06 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
3,056 |
by smlewis Mon, 2014-05-12 08:32 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
3,056 |
by rmoretti Thu, 2018-06-28 12:58 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
3,054 |
by rlwoltz Mon, 2014-04-21 06:47 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
3,049 |
by rmoretti Mon, 2015-05-25 11:49 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
5 |
3,049 |
by danpf Tue, 2020-05-12 10:58 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
3,041 |
by asbelx Mon, 2018-06-18 22:34 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
3,038 |
by cossio Tue, 2015-09-15 12:48 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
3,031 |
by smlewis Mon, 2014-04-21 06:47 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
2 |
3,029 |
by sn Thu, 2017-04-20 21:43 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
3,026 |
by syoifczeri Tue, 2015-03-10 23:08 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
3,025 |
by rmoretti Fri, 2015-09-04 10:25 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
3,017 |
by rmoretti Wed, 2018-03-07 08:44 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
3,012 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
3,006 |
by mintseris Wed, 2015-06-24 22:04 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
1 |
3,005 |
by dgront Mon, 2014-04-21 06:47 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
3,004 |
by lchen Mon, 2014-04-21 06:47 |
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