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Rosetta 3 - Applications
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Topic / Topic starter | Replies | Views | Last post | |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,958 |
by rmoretti Tue, 2015-11-10 11:10 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
2,141 |
by rmoretti Tue, 2018-01-30 07:51 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
1,760 |
by nannemdp Thu, 2019-04-25 07:58 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
2,877 |
by ssrb Fri, 2020-08-14 09:18 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
2,096 |
by rmoretti Tue, 2015-12-15 09:48 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
1,108 |
by jlawrie Wed, 2020-08-12 08:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,647 |
by jadolfbr Mon, 2014-04-21 06:48 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
2,253 |
by sgourn Tue, 2015-08-18 18:25 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,975 |
by smlewis Mon, 2017-11-13 10:43 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
1,286 |
by smlewis Fri, 2019-09-27 11:54 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
1 |
3,313 |
by jadolfbr Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
2,607 |
by smlewis Mon, 2014-04-21 06:47 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
1 |
1,729 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
1,125 |
by ssrb Tue, 2020-09-29 12:37 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
1 |
2,308 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
3,016 |
by jharamesh Mon, 2014-11-03 12:50 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
1,970 |
by rmoretti Fri, 2017-04-21 07:41 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
1 |
1,456 |
by vmulligan Thu, 2019-06-13 15:01 |
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several question in mpensemble dock by lluoto » Tue, 2024-03-12 07:54 |
1 |
129 |
by lluoto Tue, 2024-03-19 05:28 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
4,393 |
by rmoretti Mon, 2014-04-21 06:48 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,851 |
by rmoretti Tue, 2014-11-04 08:53 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
3,169 |
by rmoretti Fri, 2015-09-04 10:25 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
1,599 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
3,325 |
by rmoretti Fri, 2019-03-29 12:25 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
1 |
2,480 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
2,121 |
by rmoretti Thu, 2014-08-28 09:42 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,836 |
by rmoretti Mon, 2014-04-21 06:47 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
2,090 |
by rmoretti Tue, 2016-07-12 08:56 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,679 |
by rmoretti Thu, 2018-09-20 09:23 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
1 |
1,399 |
by rmoretti Mon, 2019-08-26 12:03 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
1 |
1,166 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
2 |
2,043 |
by Danielsebas Sun, 2019-09-08 02:08 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
2 |
3,024 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,758 |
by rmoretti Fri, 2016-04-29 08:26 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
2 |
3,044 |
by brspurri Mon, 2017-05-15 11:48 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
2 |
1,892 |
by vmulligan Tue, 2020-03-17 11:35 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
2 |
3,379 |
by fred Mon, 2014-04-21 06:48 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
4,130 |
by jrcf Mon, 2015-10-05 21:32 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
2 |
1,426 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
2,789 |
by Corvin Thu, 2022-04-21 00:50 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,239 |
by jadolfbr Mon, 2014-04-21 06:47 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
3,628 |
by cossio Fri, 2018-10-12 04:43 |
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clustering by ays » Tue, 2014-09-30 08:26 |
2 |
3,337 |
by rmoretti Mon, 2014-10-06 16:00 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
2 |
2,526 |
by Danielsebas Wed, 2019-09-11 00:44 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,582 |
by alexn Mon, 2014-04-21 06:47 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,921 |
by sushreet Tue, 2014-08-26 13:02 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
3,146 |
by syoifczeri Tue, 2015-03-10 23:08 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,267 |
by ytao Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
3,039 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
2,376 |
by sam_dc Mon, 2021-04-12 07:24 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,077 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
3,057 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
2,250 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
2 |
1,562 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
2 |
1,327 |
by jxw Wed, 2023-10-11 10:04 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,519 |
by sumukh21 Mon, 2014-04-21 06:47 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,645 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
2 |
2,434 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,829 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
3,064 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
1,379 |
by rmoretti Fri, 2021-07-09 15:05 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
4,583 |
by libai2098 Mon, 2014-04-21 06:47 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
2,981 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
1,737 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
3,105 |
by lchen Mon, 2014-04-21 06:47 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,932 |
by ronj Mon, 2014-04-21 06:47 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
3,034 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
2,410 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
2 |
1,579 |
by code_Monkey Thu, 2021-05-06 07:14 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
3,289 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
1,919 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta? by pagumaaaaa » Wed, 2022-03-16 00:23 |
2 |
1,543 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,765 |
by kalabharath Wed, 2015-04-29 16:21 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,936 |
by sacch Mon, 2014-04-21 06:47 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,708 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,794 |
by eskici Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
2 |
2,620 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
1,787 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
1,634 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,662 |
by loreseeker Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,932 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
3,043 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,533 |
by michael_luntan Mon, 2014-04-21 06:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
3,049 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
3,147 |
by mintseris Wed, 2015-06-24 22:04 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
2,026 |
by dnamkr Fri, 2022-04-22 17:00 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
2,377 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
3,250 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,955 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
2,017 |
by Martin Floor Tue, 2020-01-21 11:15 |
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remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
2 |
480 |
by lluoto Wed, 2024-02-21 17:39 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,855 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,757 |
by jlawrie Wed, 2020-08-12 08:57 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,778 |
by felipet Mon, 2014-04-21 06:47 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,496 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,857 |
by vmulligan Thu, 2019-06-13 14:59 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
4,481 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
2 |
2,262 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,454 |
by sacch Mon, 2014-04-21 06:47 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
2,034 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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