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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
3,051 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic Imitating induced fit protocol in SymDock2 without any symmetry constraints
by chenna » Fri, 2020-02-14 01:35
2
1,027 by chenna
Wed, 2020-03-04 03:24
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
1,162 by everyday847
Fri, 2019-03-29 13:13
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
2,509 by Wizard
Sun, 2015-04-26 22:36
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,109 by jarod
Mon, 2014-04-21 06:47
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,846 by jrcf
Mon, 2016-02-15 17:59
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
870 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
947 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
865 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
2,593 by fred
Mon, 2014-04-21 06:48
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
3,147 by jrcf
Mon, 2015-10-05 21:32
Normal topic antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages
by AlfredoKCL » Sun, 2021-02-28 16:42
2
505 by AlfredoKCL
Mon, 2021-03-01 04:07
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
2,470 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
1,908 by cossio
Fri, 2018-10-12 04:43
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
1,101 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
1,927 by nawsad
Mon, 2014-04-21 06:47
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,908 by rmoretti
Fri, 2016-04-29 08:26
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,087 by brspurri
Mon, 2017-05-15 11:48
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
913 by vmulligan
Tue, 2020-03-17 11:35
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
2,796 by deltag
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,195 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
540 by sam_dc
Mon, 2021-04-12 07:24
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
2,477 by rmoretti
Mon, 2014-10-06 16:00
Normal topic How to make new VALL database?
by Danielsebas » Sun, 2019-09-08 02:16
2
1,475 by Danielsebas
Wed, 2019-09-11 00:44
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,259 by RMJ
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
2,758 by alexn
Mon, 2014-04-21 06:47
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,121 by sushreet
Tue, 2014-08-26 13:02
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,332 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
2
2,802 by cossio
Tue, 2015-01-20 06:40
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,175 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,062 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,243 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
716 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
2,651 by sumukh21
Mon, 2014-04-21 06:47
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
2,784 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
1,635 by ashu4487
Sun, 2016-12-11 19:03
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
2,572 by tfliu
Mon, 2014-04-21 06:48
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
3,004 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
346 by rmoretti
Fri, 2021-07-09 15:05
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
3,716 by libai2098
Mon, 2014-04-21 06:47
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,128 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
844 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
1,879 by smlewis
Mon, 2014-04-21 06:47
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
936 by bjharris
Thu, 2020-07-02 11:09
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,001 by kalabharath
Wed, 2015-04-29 16:21
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,146 by sacch
Mon, 2014-04-21 06:47
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
845 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,218 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
1,118 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
459 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,499 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
2,735 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
1,705 by swarekwood
Fri, 2017-08-25 05:08
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
994 by Ruska322
Fri, 2019-09-06 07:13
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
839 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
2,877 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
2,953 by Pernille
Thu, 2014-07-03 07:21
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,159 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
1,557 by smlewis
Fri, 2017-06-16 07:35
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,301 by attesor
Tue, 2015-11-17 07:36
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,036 by David Weis
Mon, 2017-03-13 06:40
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
998 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,226 by Pernille
Wed, 2014-10-08 10:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,260 by mintseris
Wed, 2015-06-24 22:04
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
3,053 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
3,639 by pdbb
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
2,668 by yperez
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,561 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,028 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
804 by jlawrie
Wed, 2020-08-12 08:57
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,569 by sacch
Mon, 2014-04-21 06:47
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
817 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
2,933 by felipet
Mon, 2014-04-21 06:47
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
2,669 by ahonegger
Mon, 2014-05-12 09:08
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
1,001 by vmulligan
Thu, 2019-06-13 14:59
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
3,323 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
1,377 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
2,633 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
2,934 by jrcf
Mon, 2015-09-21 11:10
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
3,910 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
1,810 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
868 by cm21
Wed, 2020-05-20 11:22
Normal topic The energy terms in InterfaceAnalyzer
by Sunyp_IM » Tue, 2021-11-02 18:43
2
188 by zivben
Sat, 2021-11-13 04:49
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,199 by agulsevin
Mon, 2014-04-21 06:48
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,312 by ytao
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,959 by mdidonato
Wed, 2014-06-04 14:55
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
830 by almeida85
Wed, 2020-09-02 06:14
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
3,128 by mumdonar
Mon, 2014-04-21 06:48
Normal topic where is generate_ligens.linuxgccrelease?
by Nicole Deng » Thu, 2020-12-03 00:00
2
692 by Nicole Deng
Fri, 2020-12-18 00:28
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
2,966 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
2,303 by brspurri
Thu, 2017-06-01 10:58
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
2,519 by felipet
Wed, 2014-07-02 07:26
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
2,889 by rosend
Tue, 2015-11-17 12:12
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
1,981 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Error when trying docking protocol with different ligand
by scyphs » Wed, 2020-08-05 04:37
2
733 by scyphs
Mon, 2020-08-10 08:09
Normal topic protein-ligand docking rescoring with interfaceAnalyzer
by syntekabio2019 » Sat, 2020-12-19 03:59
2
607 by syntekabio2019
Sun, 2020-12-20 21:10
Normal topic D-amino acids tripeptide docking.
by sam_dc » Sat, 2021-07-03 08:48
2
370 by vmulligan
Tue, 2021-07-06 08:27
Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55
2
3,886 by frichter
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,457 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic Element 'trRosettaProtocol': This element is not expected.
by csaylan » Tue, 2021-04-20 14:21
2
458 by csaylan
Tue, 2021-04-20 16:13
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