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Rosetta 3 - Applications
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,675 |
by rmoretti Tue, 2014-11-04 08:53 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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2,936 |
by rmoretti Fri, 2015-09-04 10:25 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,442 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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3,050 |
by rmoretti Fri, 2019-03-29 12:25 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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1,964 |
by rmoretti Thu, 2014-08-28 09:42 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
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1,935 |
by rmoretti Tue, 2016-07-12 08:56 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,510 |
by rmoretti Thu, 2018-09-20 09:23 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,207 |
by rmoretti Mon, 2019-08-26 12:03 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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955 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,865 |
by jharamesh Mon, 2014-11-03 12:50 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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1,795 |
by rmoretti Fri, 2017-04-21 07:41 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,268 |
by vmulligan Thu, 2019-06-13 15:01 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
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2,520 |
by rmoretti Fri, 2016-04-29 08:26 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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2,793 |
by brspurri Mon, 2017-05-15 11:48 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,639 |
by vmulligan Tue, 2020-03-17 11:35 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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3,185 |
by fred Mon, 2014-04-21 06:48 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,881 |
by jrcf Mon, 2015-10-05 21:32 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,166 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
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1,401 |
by Corvin Thu, 2022-04-21 00:50 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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3,174 |
by cossio Fri, 2018-10-12 04:43 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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1,806 |
by Danielsebas Sun, 2019-09-08 02:08 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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2,498 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
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2,737 |
by sacch Mon, 2014-04-21 06:47 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,698 |
by sushreet Tue, 2014-08-26 13:02 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,939 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
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3,460 |
by loreseeker Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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2,826 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
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2,071 |
by sam_dc Mon, 2021-04-12 07:24 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
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3,333 |
by michael_luntan Mon, 2014-04-21 06:47 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,117 |
by rmoretti Mon, 2014-10-06 16:00 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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2,259 |
by Danielsebas Wed, 2019-09-11 00:44 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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1,114 |
by rmoretti Fri, 2021-07-09 15:05 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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3,844 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,791 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,977 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,340 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,440 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,214 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,744 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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1,498 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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3,725 |
by jarod Mon, 2014-04-21 06:47 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
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3,567 |
by felipet Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
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2,850 |
by mpacella Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,449 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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3,085 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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1,637 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,183 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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3,647 |
by harshkhare Mon, 2014-04-21 06:47 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,557 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
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1,489 |
by tuleshwori Thu, 2020-05-21 02:08 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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4,239 |
by sacch Mon, 2014-04-21 06:47 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,811 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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2,042 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,276 |
by code_Monkey Thu, 2021-05-06 07:14 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,647 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,788 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
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3,494 |
by m_grisewood Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,370 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,567 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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1,425 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
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1,654 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,138 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,148 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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2,988 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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2,673 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
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1,747 |
by Martin Floor Tue, 2020-01-21 11:15 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,841 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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2,905 |
by mintseris Wed, 2015-06-24 22:04 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,639 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
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1,499 |
by jlawrie Wed, 2020-08-12 08:57 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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4,204 |
by jadolfbr Thu, 2015-09-03 16:18 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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2,013 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
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1,666 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,277 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
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1,617 |
by vmulligan Thu, 2019-06-13 14:59 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
4,603 |
by frichter Mon, 2014-04-21 06:47 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,511 |
by mdidonato Wed, 2014-06-04 14:55 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
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1,432 |
by almeida85 Wed, 2020-09-02 06:14 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
5,201 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
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3,280 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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3,840 |
by jrcf Mon, 2015-09-21 11:10 |
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Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock? by lei » Mon, 2023-09-11 23:34 |
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71 |
by lei Wed, 2023-09-13 19:35 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,482 |
by lkrathn Mon, 2014-04-21 06:48 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
2 |
2,920 |
by rmoretti Mon, 2019-11-04 13:56 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,525 |
by cm21 Wed, 2020-05-20 11:22 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
2 |
1,177 |
by zivben Sat, 2021-11-13 04:49 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,565 |
by rmoretti Mon, 2014-04-21 06:48 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
3,147 |
by brspurri Thu, 2017-06-01 10:58 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,507 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,677 |
by mumdonar Mon, 2014-04-21 06:48 |
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where is generate_ligens.linuxgccrelease? by Nicole Deng » Thu, 2020-12-03 00:00 |
2 |
1,426 |
by Nicole Deng Fri, 2020-12-18 00:28 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
2 |
1,222 |
by vmulligan Tue, 2021-07-06 08:27 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
3,054 |
by exchhattu Mon, 2014-04-21 06:47 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
3,080 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,544 |
by rosend Tue, 2015-11-17 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
2,935 |
by shadrinams Wed, 2018-03-14 07:46 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,340 |
by scyphs Mon, 2020-08-10 08:09 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,038 |
by yliang20 Wed, 2022-06-15 13:46 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,225 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,707 |
by jharamesh Sat, 2015-08-08 19:51 |
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