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Rosetta 3 - Applications
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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2,612 |
by cossio Fri, 2018-05-18 09:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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1,496 |
by orionshih Wed, 2019-06-26 03:54 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
1,461 |
by almeida85 Tue, 2020-09-01 01:29 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,561 |
by lanselibai Tue, 2014-11-11 04:42 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
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3,189 |
by rmoretti Thu, 2015-09-17 12:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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3,896 |
by ytao Mon, 2014-04-21 06:47 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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2,138 |
by aep Sat, 2016-08-13 13:03 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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2,493 |
by staciekim Thu, 2017-08-17 17:06 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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2,130 |
by esozdemir Thu, 2019-06-13 12:19 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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1,082 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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3,468 |
by harshkhare Mon, 2014-04-21 06:47 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
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2,335 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
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2,747 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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1,629 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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4,028 |
by sacch Mon, 2014-04-21 06:47 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,141 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
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3,368 |
by felipet Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
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2,694 |
by mpacella Mon, 2014-04-21 06:47 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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2,806 |
by rmoretti Sat, 2015-07-11 13:38 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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3,536 |
by rmoretti Wed, 2016-09-14 02:05 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
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1,783 |
by Corvin Thu, 2019-10-10 01:12 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
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1,901 |
by dyu Thu, 2017-09-28 18:54 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
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1,357 |
by Danielsebas Tue, 2019-09-17 01:03 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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846 |
by browns02 Tue, 2021-06-29 11:41 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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2,031 |
by rmoretti Mon, 2017-03-13 08:01 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
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3,304 |
by m_grisewood Mon, 2014-04-21 06:47 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
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2,572 |
by ronj Mon, 2014-04-21 06:47 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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1,593 |
by everyday847 Fri, 2019-03-29 13:13 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
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1,754 |
by jlapin Wed, 2018-08-01 07:15 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
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3,461 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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1,491 |
by chenna Wed, 2020-03-04 03:24 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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2,264 |
by jrcf Mon, 2016-02-15 17:59 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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1,301 |
by chrisHKL Wed, 2020-03-04 10:49 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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656 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,399 |
by hdelrisco Fri, 2019-10-18 17:16 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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1,338 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
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915 |
by guowuchen Mon, 2022-03-07 23:34 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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2,949 |
by Wizard Sun, 2015-04-26 22:36 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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3,614 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
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2,336 |
by rmoretti Fri, 2016-04-29 08:26 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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2,560 |
by brspurri Mon, 2017-05-15 11:48 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,422 |
by vmulligan Tue, 2020-03-17 11:35 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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2,994 |
by fred Mon, 2014-04-21 06:48 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,676 |
by jrcf Mon, 2015-10-05 21:32 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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966 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
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770 |
by Corvin Thu, 2022-04-21 00:50 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
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4,386 |
by frichter Mon, 2014-04-21 06:47 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
2,694 |
by cossio Fri, 2018-10-12 04:43 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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1,584 |
by Danielsebas Sun, 2019-09-08 02:08 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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2,236 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
2 |
2,031 |
by Danielsebas Wed, 2019-09-11 00:44 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,517 |
by sushreet Tue, 2014-08-26 13:02 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,756 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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2,629 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
1,779 |
by sam_dc Mon, 2021-04-12 07:24 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
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4,930 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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2,910 |
by rmoretti Mon, 2014-10-06 16:00 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,309 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,259 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,023 |
by ashu4487 Sun, 2016-12-11 19:03 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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900 |
by rmoretti Fri, 2021-07-09 15:05 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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3,644 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,553 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,742 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,156 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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3,538 |
by jarod Mon, 2014-04-21 06:47 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
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2,872 |
by exchhattu Mon, 2014-04-21 06:47 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,550 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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1,294 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,629 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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1,760 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,035 |
by code_Monkey Thu, 2021-05-06 07:14 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
2,921 |
by sacch Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,272 |
by nawsad Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
2,902 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
1,438 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
2 |
853 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,734 |
by smlewis Mon, 2014-04-21 06:47 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,380 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,301 |
by tuleshwori Thu, 2020-05-21 02:08 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,230 |
by maxebert Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,428 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
2,579 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,760 |
by lchen Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
2 |
2,185 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
1,393 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
1,244 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,652 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
2,723 |
by mintseris Wed, 2015-06-24 22:04 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
1,212 |
by dnamkr Fri, 2022-04-22 17:00 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
2,979 |
by tfliu Mon, 2014-04-21 06:48 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
1,976 |
by smlewis Fri, 2017-06-16 07:35 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,778 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,467 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,509 |
by Martin Floor Tue, 2020-01-21 11:15 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,437 |
by eskici Mon, 2014-04-21 06:47 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,449 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,304 |
by jlawrie Wed, 2020-08-12 08:57 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,082 |
by ahonegger Mon, 2014-05-12 09:08 |
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AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,433 |
by vmulligan Thu, 2019-06-13 14:59 |
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