You are here

Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
2,043 by ays
Tue, 2014-09-30 08:31
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
1,720 by rmoretti
Thu, 2018-09-20 09:19
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
974 by brspurri
Thu, 2020-05-14 12:24
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
880 by Astghik
Thu, 2020-12-03 02:35
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
2
2,801 by tingting
Tue, 2022-03-15 23:55
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
1,715 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,559 by dnamkr
Mon, 2019-12-30 11:43
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
2,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
1,732 by cossio
Sun, 2018-03-11 09:12
Normal topic Protein Ensemble RosettaLigand Docking
by sam_dc » Fri, 2021-03-26 10:18
2
742 by sam_dc
Fri, 2021-03-26 12:04
Normal topic Docking-RMS value nan
by jlawrie » Wed, 2020-08-12 07:03
2
946 by jlawrie
Wed, 2020-08-12 07:27
Normal topic r_frag_quality
by ii_cnr » Mon, 2021-04-12 03:06
2
643 by ii_cnr
Mon, 2021-04-12 23:44
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
3,189 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
3,795 by pdbb
Mon, 2014-04-21 06:47
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
2,738 by krlitros87
Wed, 2014-10-22 09:31
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
2,171 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,980 by bp
Thu, 2016-12-22 07:54
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,413 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
2,792 by yperez
Mon, 2014-04-21 06:47
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
1,056 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
2,257 by sn
Thu, 2017-04-20 21:43
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
1,408 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
957 by jlawrie
Thu, 2020-08-20 11:00
Normal topic Filling the missing loops
by code_Monkey » Tue, 2021-04-27 07:44
2
651 by code_Monkey
Tue, 2021-04-27 12:11
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,708 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
2,089 by eyong123
Wed, 2015-04-22 11:33
Normal topic How to restart RASREC run
by aep » Fri, 2016-07-01 04:39
2
1,804 by aep
Fri, 2016-07-01 06:54
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
1,659 by dnamkr
Thu, 2019-12-26 10:22
Normal topic How to run partial_thread in RosettaCM when residure are more than 9999?
by lanselibai » Mon, 2020-05-11 22:43
2
1,283 by lanselibai
Tue, 2020-05-12 20:25
Normal topic hbond_sr_bb and hbond_lr_bb for different chains
by tylerborrman » Tue, 2020-10-13 13:41
2
959 by tylerborrman
Tue, 2021-02-09 16:33
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
4,172 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic Is native.pdb necess for fragment_picker?
by ylwang » Thu, 2020-03-12 00:57
2
1,170 by ylwang
Thu, 2020-03-12 20:42
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
2,619 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
4,162 by zcrook
Tue, 2014-11-25 10:27
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,493 by cossio
Tue, 2015-09-15 12:48
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
4,230 by lanselibai
Wed, 2014-09-24 13:21
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
2,950 by chelsell
Wed, 2015-05-27 14:36
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
2,078 by rmoretti
Mon, 2016-09-05 11:10
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
1,254 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,361 by agulsevin
Mon, 2014-04-21 06:48
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
2,914 by alexn
Mon, 2014-04-21 06:47
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,450 by ytao
Mon, 2014-04-21 06:47
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,707 by lanselibai
Tue, 2014-09-30 02:28
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,998 by mtyras
Mon, 2015-06-08 03:18
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
2,115 by attesor
Mon, 2015-10-26 09:01
Normal topic Relax evaluates protein-DNA complexes?
by pablogalazdavison » Thu, 2022-05-12 12:05
2
144 by pablogalazdavison
Fri, 2022-05-20 12:27
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,116 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
3,160 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
5,058 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
2,804 by lanselibai
Mon, 2014-10-13 10:10
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
1,254 by mxp
Mon, 2019-09-23 01:40
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,311 by benhardy
Sun, 2020-09-20 11:15
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
2,422 by franfdez
Mon, 2014-07-28 01:04
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
2,814 by sumukh21
Mon, 2014-04-21 06:47
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
2,754 by attesor
Mon, 2014-06-16 07:34
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
1,514 by Corvin
Wed, 2019-06-12 00:04
Normal topic Segmentation Fault in Rosetta CM Hybridize
by yliang20 » Mon, 2022-06-06 17:25
2
102 by yliang20
Tue, 2022-06-07 08:36
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
2,109 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
2,230 by e3lm
Tue, 2021-09-14 10:02
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
2,662 by felipet
Wed, 2014-07-02 07:26
Normal topic A problem with "make_fragments.pl" script dependencies
by Corvin » Fri, 2019-08-16 04:30
2
1,657 by Corvin
Tue, 2019-08-27 00:46
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
3,899 by libai2098
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,591 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,982 by aaj
Wed, 2016-02-24 07:37
Normal topic Strong bias in sampling observed in RosettaDock
by chenna » Thu, 2020-08-27 22:23
2
910 by chenna
Tue, 2021-10-12 20:51
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,297 by sacch
Mon, 2014-04-21 06:47
Normal topic GrowLigand
by allan.ferrari » Sat, 2019-10-19 05:32
2
1,381 by allan.ferrari
Tue, 2019-11-05 16:52
Normal topic RoseTTaFold
by ozsolomon » Thu, 2021-10-07 05:27
2
755 by ozsolomon
Thu, 2021-10-07 14:25
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
2,883 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
1,957 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
2,305 by asbelx
Mon, 2018-06-18 22:34
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
1,030 by amorin
Fri, 2021-02-12 08:53
Normal topic Syntax for python-based (.py) command line on cluster
by lanselibai » Fri, 2014-11-14 09:32
2
4,498 by lanselibai
Thu, 2014-11-20 02:15
Normal topic Error from clean_pdb.py
by code_Monkey » Mon, 2021-03-01 17:00
2
700 by code_Monkey
Thu, 2021-03-04 12:14
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
3,033 by loreseeker
Mon, 2014-04-21 06:47
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
2,422 by banshee
Mon, 2016-09-12 23:41
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
2,535 by chelsell
Wed, 2014-10-08 12:25
Normal topic The usage of antibody_H3.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 22:50
2
1,133 by Sunyp_IM
Thu, 2020-06-04 08:20
Normal topic getting a3m files
by alonwenger » Wed, 2021-12-15 02:38
2
570 by alonwenger
Sat, 2021-12-18 12:32
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
2,093 by felipet
Thu, 2014-07-17 10:13
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
2,813 by jennifer
Fri, 2015-03-27 05:56
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
2,296 by bogac
Tue, 2017-03-07 02:11
Normal topic Homology Modeling-no PDB output
by jlawrie » Wed, 2020-08-12 06:30
2
1,048 by jlawrie
Wed, 2020-08-12 08:56
Normal topic GeneralizedKIC loop closure error
by chenna » Sat, 2021-04-10 00:21
2
673 by chenna
Mon, 2021-04-12 22:08
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
2,355 by lanselibai
Fri, 2014-10-17 03:36
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
1,857 by msardejani
Mon, 2016-12-12 17:48
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,375 by aloshbau
Mon, 2014-04-21 06:47
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
2,206 by cam11
Wed, 2014-08-13 10:06
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
4,443 by fred
Tue, 2014-04-01 08:24
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
1,413 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic Generalized KIC loop closure affects downstream residues without perturbations
by chenna » Mon, 2021-04-26 02:16
2
648 by chenna
Wed, 2021-04-28 07:18
Normal topic cluster.mpi running in MPI mode?
by sacch » Fri, 2011-11-18 23:30
2
3,741 by sacch
Mon, 2014-04-21 06:47
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,932 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
3,100 by felipet
Mon, 2014-04-21 06:47
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
2,452 by mpacella
Mon, 2014-04-21 06:47
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
3,208 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
2,583 by ahonegger
Fri, 2014-06-06 09:31
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,178 by cossio
Fri, 2018-05-18 09:51
Normal topic Question about fastsaxs and saxs_score
by orionshih » Thu, 2019-06-13 02:30
2
1,226 by orionshih
Wed, 2019-06-26 03:54
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
1,132 by almeida85
Tue, 2020-09-01 01:29
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications