You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
4,819 |
by jingwei xu Wed, 2016-05-04 23:28 |
|
|
Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
2 |
1,534 |
by ylwang Thu, 2020-03-12 20:42 |
|
|
Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
2 |
667 |
by liuwenxi Fri, 2022-08-05 09:50 |
|
|
Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
2 |
4,605 |
by zcrook Tue, 2014-11-25 10:27 |
|
|
Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
2,839 |
by cossio Tue, 2015-09-15 12:48 |
|
|
clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
2 |
4,654 |
by lanselibai Wed, 2014-09-24 13:21 |
|
|
Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,312 |
by chelsell Wed, 2015-05-27 14:36 |
|
|
Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,437 |
by rmoretti Mon, 2016-09-05 11:10 |
|
|
Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
1,641 |
by Danielsebas Sun, 2019-09-01 02:38 |
|
|
Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,690 |
by RMJ Mon, 2014-04-21 06:47 |
|
|
Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
3,701 |
by aloshbau Mon, 2014-04-21 06:47 |
|
|
Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,428 |
by attesor Mon, 2015-10-26 09:01 |
|
|
Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
871 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
|
|
Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,215 |
by deltag Mon, 2014-04-21 06:47 |
|
|
Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
2 |
4,013 |
by lanselibai Tue, 2014-09-30 02:28 |
|
|
rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,358 |
by mtyras Mon, 2015-06-08 03:18 |
|
|
Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,421 |
by kszczepaniak Mon, 2014-04-21 06:48 |
|
|
Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
3,161 |
by lanselibai Mon, 2014-10-13 10:10 |
|
|
antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,608 |
by mxp Mon, 2019-09-23 01:40 |
|
|
Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
1,725 |
by benhardy Sun, 2020-09-20 11:15 |
|
|
cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,122 |
by sacch Mon, 2014-04-21 06:47 |
|
|
Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
2,745 |
by franfdez Mon, 2014-07-28 01:04 |
|
|
Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,452 |
by felipet Mon, 2014-04-21 06:47 |
|
|
PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,154 |
by attesor Mon, 2014-06-16 07:34 |
|
|
Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
2 |
1,932 |
by Corvin Wed, 2019-06-12 00:04 |
|
|
Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
807 |
by yliang20 Tue, 2022-06-07 08:36 |
|
|
Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
2,984 |
by e3lm Tue, 2021-09-14 10:02 |
|
|
A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
2,080 |
by Corvin Tue, 2019-08-27 00:46 |
|
|
does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,283 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,431 |
by shrutikhare Fri, 2014-04-18 23:11 |
|
|
creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,315 |
by aaj Wed, 2016-02-24 07:37 |
|
|
Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
2 |
1,462 |
by chenna Tue, 2021-10-12 20:51 |
|
|
GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
1,718 |
by allan.ferrari Tue, 2019-11-05 16:52 |
|
|
RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
1,599 |
by ozsolomon Thu, 2021-10-07 14:25 |
|
|
Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
2 |
2,312 |
by Martin Floor Mon, 2017-05-15 11:13 |
|
|
The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
2,764 |
by asbelx Mon, 2018-06-18 22:34 |
|
|
Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,423 |
by amorin Fri, 2021-02-12 08:53 |
|
|
Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
4,827 |
by lanselibai Thu, 2014-11-20 02:15 |
|
|
Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
1,059 |
by code_Monkey Thu, 2021-03-04 12:14 |
|
|
refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
2,844 |
by banshee Mon, 2016-09-12 23:41 |
|
|
The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
1,532 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
|
|
getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
1,754 |
by alonwenger Sat, 2021-12-18 12:32 |
|
|
homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,137 |
by pdbb Mon, 2014-04-21 06:47 |
|
|
select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,038 |
by ast Mon, 2014-04-21 06:48 |
|
|
Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,414 |
by felipet Thu, 2014-07-17 10:13 |
|
|
Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,209 |
by jennifer Fri, 2015-03-27 05:56 |
|
|
Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
4,488 |
by frichter Mon, 2014-04-21 06:47 |
|
|
DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,094 |
by yperez Mon, 2014-04-21 06:47 |
|
|
KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,660 |
by bogac Tue, 2017-03-07 02:11 |
|
|
Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
2,876 |
by chelsell Wed, 2014-10-08 12:25 |
|
|
How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
2,699 |
by lanselibai Fri, 2014-10-17 03:36 |
|
|
How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
2,178 |
by msardejani Mon, 2016-12-12 17:48 |
|
|
CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
2 |
90 |
by almeida85 Tue, 2023-05-23 08:23 |
|
|
FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,542 |
by cam11 Wed, 2014-08-13 10:06 |
|
|
Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
5,040 |
by BDBorrillo Mon, 2014-04-21 06:47 |
|
|
score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
4,991 |
by fred Tue, 2014-04-01 08:24 |
|
|
Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,417 |
by jlawrie Wed, 2020-08-12 08:56 |
|
|
GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
1,098 |
by chenna Mon, 2021-04-12 22:08 |
|
|
Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,063 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
|
|
Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
2 |
1,053 |
by chenna Wed, 2021-04-28 07:18 |
|
|
Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,270 |
by Ashafix Mon, 2014-04-21 06:48 |
|
|
Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,395 |
by proteinproteindock Mon, 2014-04-21 06:47 |
|
|
Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
2,950 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,720 |
by ytao Mon, 2014-04-21 06:47 |
|
|
ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
2,920 |
by ahonegger Fri, 2014-06-06 09:31 |
|
|
cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
2,735 |
by cossio Fri, 2018-05-18 09:51 |
|
|
Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,589 |
by orionshih Wed, 2019-06-26 03:54 |
|
|
make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
1,564 |
by almeida85 Tue, 2020-09-01 01:29 |
|
|
Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,628 |
by lanselibai Tue, 2014-11-11 04:42 |
|
|
Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,300 |
by rmoretti Thu, 2015-09-17 12:47 |
|
|
membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
3,964 |
by ytao Mon, 2014-04-21 06:47 |
|
|
Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,204 |
by aep Sat, 2016-08-13 13:03 |
|
|
Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
2,609 |
by staciekim Thu, 2017-08-17 17:06 |
|
|
RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,230 |
by esozdemir Thu, 2019-06-13 12:19 |
|
|
How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
1,173 |
by Nicole Deng Thu, 2020-11-05 03:04 |
|
|
prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
2,993 |
by sacch Mon, 2014-04-21 06:47 |
|
|
cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,413 |
by jingwei xu Wed, 2016-05-04 23:26 |
|
|
Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,845 |
by ashu4487 Mon, 2018-07-16 19:24 |
|
|
De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
1,707 |
by BuddySphinx Tue, 2019-07-02 12:03 |
|
|
ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,234 |
by ajaniharesh Tue, 2019-04-09 06:53 |
|
|
example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,304 |
by maxebert Mon, 2014-04-21 06:47 |
|
|
How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
2,882 |
by rmoretti Sat, 2015-07-11 13:38 |
|
|
RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
3,684 |
by rmoretti Wed, 2016-09-14 02:05 |
|
|
"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
1,864 |
by Corvin Thu, 2019-10-10 01:12 |
|
|
problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
1,978 |
by dyu Thu, 2017-09-28 18:54 |
|
|
Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,448 |
by Danielsebas Tue, 2019-09-17 01:03 |
|
|
setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
947 |
by browns02 Tue, 2021-06-29 11:41 |
|
|
how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
2 |
2,982 |
by felipet Wed, 2014-07-02 07:26 |
|
|
Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
2,114 |
by rmoretti Mon, 2017-03-13 08:01 |
|
|
symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,652 |
by ronj Mon, 2014-04-21 06:47 |
|
|
reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
1,676 |
by everyday847 Fri, 2019-03-29 13:13 |
|
|
Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
1,848 |
by jlapin Wed, 2018-08-01 07:15 |
|
|
Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,535 |
by jadolfbr Mon, 2014-05-12 10:41 |
|
|
Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
2 |
1,582 |
by chenna Wed, 2020-03-04 03:24 |
|
|
Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,348 |
by jrcf Mon, 2016-02-15 17:59 |
|
|
nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
1,375 |
by chrisHKL Wed, 2020-03-04 10:49 |
|
|
RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
888 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
|
|
change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
1,483 |
by hdelrisco Fri, 2019-10-18 17:16 |
|
|
"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
1,421 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
|
|
small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
1,025 |
by guowuchen Mon, 2022-03-07 23:34 |
Log in to post new content in the forum.
