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Rosetta 3 - Applications
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,436 |
by rmoretti Tue, 2018-04-10 15:34 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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1,278 |
by rmoretti Tue, 2018-04-10 15:29 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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969 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
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916 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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992 |
by evo_umich Mon, 2018-04-02 12:13 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
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886 |
by enmirts Wed, 2018-03-28 10:34 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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3,534 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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5,055 |
by rmoretti Mon, 2018-03-19 12:12 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
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2,570 |
by shadrinams Wed, 2018-03-14 07:46 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
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2,003 |
by cossio Sun, 2018-03-11 09:12 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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2,553 |
by rmoretti Wed, 2018-03-07 08:44 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,394 |
by rmoretti Wed, 2018-02-21 15:21 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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4,871 |
by Loki01 Thu, 2018-02-15 13:54 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
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2,404 |
by rmoretti Tue, 2018-02-06 09:47 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
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1,767 |
by rmoretti Tue, 2018-01-30 07:51 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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2,594 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
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1,816 |
by rmoretti Tue, 2018-01-16 07:24 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,290 |
by rmoretti Mon, 2018-01-15 16:14 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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1,889 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
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3,218 |
by smlewis Sat, 2017-12-23 15:56 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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4,228 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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863 |
by sdh_h Sun, 2017-12-17 06:07 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,388 |
by kamau Wed, 2017-12-13 14:31 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
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3,201 |
by smlewis Wed, 2017-12-13 09:54 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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1,001 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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how to generate the whole molecule that contains all the symmetric chains by Sunyp_IM » Sun, 2017-12-10 19:43 |
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986 |
by Sunyp_IM Sun, 2017-12-10 19:43 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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892 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,283 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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3,938 |
by fradom Tue, 2017-12-05 01:52 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
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1,134 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
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1,504 |
by smlewis Mon, 2017-12-04 12:18 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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3,557 |
by rmoretti Fri, 2017-12-01 12:05 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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5,535 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
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2,763 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
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ddG calculation by malkeet.singh » Sun, 2017-06-25 07:53 |
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20,273 |
by malkeet.singh Tue, 2017-11-14 04:33 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
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1,560 |
by smlewis Mon, 2017-11-13 10:43 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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4,297 |
by jessye Fri, 2017-11-03 20:15 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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3,501 |
by cdegut Fri, 2017-11-03 05:50 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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1,847 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
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3,662 |
by dfcoelho Tue, 2017-10-17 11:52 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,292 |
by rmoretti Tue, 2017-10-17 09:03 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,358 |
by rmoretti Tue, 2017-10-10 10:08 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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2,990 |
by rmoretti Tue, 2017-10-10 09:58 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,487 |
by rmoretti Tue, 2017-10-10 09:54 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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912 |
by sn Thu, 2017-10-05 17:07 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
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1,876 |
by dyu Thu, 2017-09-28 18:54 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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1,632 |
by rmoretti Fri, 2017-09-15 13:11 |
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Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
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8,216 |
by smlewis Fri, 2017-09-08 09:16 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,598 |
by rmoretti Mon, 2017-09-04 10:33 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,063 |
by brspurri Sat, 2017-08-26 07:08 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,164 |
by swarekwood Fri, 2017-08-25 05:08 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
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2,687 |
by rmoretti Thu, 2017-08-24 11:00 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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4,698 |
by rmoretti Thu, 2017-08-24 08:19 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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2,420 |
by rmoretti Tue, 2017-08-22 09:03 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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1,859 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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2,447 |
by staciekim Thu, 2017-08-17 17:06 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,196 |
by smlewis Tue, 2017-08-15 23:19 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
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8,323 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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1,571 |
by rmoretti Thu, 2017-08-03 09:29 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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4,735 |
by rmoretti Tue, 2017-07-18 09:00 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
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3,306 |
by smlewis Tue, 2017-07-11 07:53 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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5,026 |
by rmoretti Thu, 2017-07-06 13:00 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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3,091 |
by jrporter Wed, 2017-07-05 06:30 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
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5,016 |
by smlewis Tue, 2017-07-04 15:42 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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1,713 |
by rmoretti Mon, 2017-07-03 09:17 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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3,439 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
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9,781 |
by belousoff Mon, 2017-06-26 16:46 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,535 |
by smlewis Thu, 2017-06-22 13:31 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
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5,118 |
by rmoretti Tue, 2017-06-20 09:02 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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4,440 |
by felipet Fri, 2017-06-16 11:42 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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1,947 |
by smlewis Fri, 2017-06-16 07:35 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
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3,415 |
by Denise Thu, 2017-06-15 04:26 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
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6,314 |
by attesor Wed, 2017-06-14 07:32 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,084 |
by subha Fri, 2017-06-09 15:42 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
9 |
6,438 |
by rpavlov Tue, 2017-06-06 11:45 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
5 |
4,648 |
by sjyang7 Sat, 2017-06-03 06:09 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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2,841 |
by brspurri Thu, 2017-06-01 10:58 |
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a trouble during floppytail modeling by chenchaozhao » Tue, 2011-03-15 03:59 |
39 |
33,335 |
by smlewis Thu, 2017-06-01 10:02 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
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1,441 |
by jadolfbr Thu, 2017-06-01 10:00 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
5 |
4,198 |
by rmoretti Thu, 2017-06-01 08:52 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
1,452 |
by rmoretti Thu, 2017-05-18 13:51 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
2 |
2,515 |
by brspurri Mon, 2017-05-15 11:48 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,202 |
by Martin Floor Mon, 2017-05-15 11:13 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
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1,611 |
by rmoretti Mon, 2017-05-15 08:54 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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1,717 |
by rmoretti Thu, 2017-04-27 07:10 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,309 |
by rmoretti Tue, 2017-04-25 06:41 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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1,631 |
by rmoretti Fri, 2017-04-21 07:41 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
2 |
2,573 |
by sn Thu, 2017-04-20 21:43 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
2,978 |
by rmoretti Thu, 2017-04-20 13:59 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
13 |
8,827 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
1 |
1,763 |
by rmoretti Sat, 2017-04-15 13:30 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
4 |
3,228 |
by MJG Tue, 2017-04-04 23:59 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
2,521 |
by rmoretti Tue, 2017-03-28 08:51 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
1 |
1,539 |
by rmoretti Fri, 2017-03-24 13:39 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,134 |
by brspurri Fri, 2017-03-24 11:35 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
3,634 |
by attesor Thu, 2017-03-16 01:21 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
5 |
3,919 |
by David Weis Mon, 2017-03-13 10:59 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
2,002 |
by rmoretti Mon, 2017-03-13 08:01 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,428 |
by David Weis Mon, 2017-03-13 06:40 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,551 |
by bogac Tue, 2017-03-07 02:11 |
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