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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort ascending
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,838 by nannemdp
Thu, 2019-04-25 07:58
Normal topic input file for loop modeling
by Negarsardar » Tue, 2019-04-16 10:21
1
1,559 by rmoretti
Tue, 2019-04-16 11:07
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
3,320 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
2,831 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
1,687 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
6,458 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
3,789 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
1,666 by rmoretti
Fri, 2019-03-29 13:21
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
2,120 by everyday847
Fri, 2019-03-29 13:13
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
3,430 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
1,791 by rmoretti
Fri, 2019-03-29 09:58
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
1,573 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
4,148 by rmoretti
Fri, 2019-03-29 09:30
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
0
1,050 by engand93
Wed, 2019-03-27 02:43
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
5,592 by purvi24
Mon, 2019-03-11 06:43
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
3,748 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
2,366 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
2,435 by tsztain
Mon, 2019-02-18 09:55
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
2,209 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
1,281 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
3,044 by smlewis
Wed, 2018-12-12 16:51
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
5,299 by tsztain
Tue, 2018-12-11 13:41
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
2,230 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic Weighted scores??
by sizhang » Wed, 2018-12-05 15:22
0
1,046 by sizhang
Wed, 2018-12-05 15:22
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
2,048 by rmoretti
Tue, 2018-12-04 08:55
Normal topic SnugDock - What protocol should I use?
by dfcoelho » Tue, 2018-11-27 07:32
8
7,804 by dfcoelho
Wed, 2018-11-28 08:07
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
3,666 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
4,058 by rmoretti
Fri, 2018-11-23 11:23
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
2,249 by rmoretti
Fri, 2018-11-23 07:59
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
17,329 by rmoretti
Wed, 2018-11-21 15:45
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
2,019 by rmoretti
Wed, 2018-11-21 15:40
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,957 by rmoretti
Wed, 2018-11-21 15:31
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
1,616 by rmoretti
Wed, 2018-11-21 15:10
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
1,113 by ylwang
Sun, 2018-11-18 17:51
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
3,162 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
5,083 by rmoretti
Mon, 2018-11-12 14:31
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
1,609 by jadolfbr
Fri, 2018-11-09 14:28
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
3,616 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
4,542 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,994 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
1,507 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
5,006 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
3,056 by smlewis
Mon, 2018-10-15 08:42
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
3,817 by cossio
Fri, 2018-10-12 04:43
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
9,140 by Anpu
Tue, 2018-09-25 19:06
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
4,083 by Anpu
Tue, 2018-09-25 18:53
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,748 by rmoretti
Thu, 2018-09-20 09:23
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
2,549 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
2,818 by smlewis
Fri, 2018-09-14 10:34
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
3,061 by smlewis
Mon, 2018-09-10 11:48
Normal topic structure prediction
by MA » Wed, 2018-09-05 00:50
0
1,033 by MA
Wed, 2018-09-05 00:50
Normal topic Flexpepdock I_hb scoring term
by mbakalar » Fri, 2018-08-31 13:05
0
1,208 by mbakalar
Fri, 2018-08-31 13:06
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,727 by rmoretti
Fri, 2018-08-24 11:28
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
5,021 by smlewis
Wed, 2018-08-08 15:48
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,960 by rmoretti
Fri, 2018-08-03 08:26
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
1,627 by rmoretti
Fri, 2018-08-03 08:16
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,690 by rmoretti
Fri, 2018-08-03 07:54
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
2,331 by jlapin
Wed, 2018-08-01 07:15
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
1,582 by smlewis
Fri, 2018-07-27 13:32
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
3,387 by ashu4487
Mon, 2018-07-16 19:24
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
3,351 by rmoretti
Thu, 2018-06-28 12:58
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
3,907 by rmoretti
Thu, 2018-06-28 12:44
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
4,338 by tong
Sun, 2018-06-24 23:30
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
3,409 by asbelx
Mon, 2018-06-18 22:34
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
5,759 by smlewis
Thu, 2018-06-14 10:26
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
3,482 by malkeet.singh
Mon, 2018-05-21 04:26
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
61,028 by rmoretti
Fri, 2018-05-18 12:40
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,685 by rmoretti
Fri, 2018-05-18 12:28
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
3,439 by cossio
Fri, 2018-05-18 09:51
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,808 by smlewis
Mon, 2018-05-07 11:42
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
3,460 by subha
Fri, 2018-04-20 12:49
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
1,224 by asbelx
Fri, 2018-04-20 03:33
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
3,544 by Loki01
Thu, 2018-04-12 08:28
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,867 by rmoretti
Tue, 2018-04-10 15:34
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,698 by rmoretti
Tue, 2018-04-10 15:29
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
1,278 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic Problem with Scoring function and PlaceStub mover
by a-eatemadi@razi... » Sat, 2018-04-07 09:22
0
1,228 by a-eatemadi@razi...
Sat, 2018-04-07 09:24
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
1,290 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Secondary Matching build_sets Error
by enmirts » Wed, 2018-03-28 10:33
0
1,165 by enmirts
Wed, 2018-03-28 10:34
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
4,919 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
6,590 by rmoretti
Mon, 2018-03-19 12:12
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
3,448 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
2,762 by cossio
Sun, 2018-03-11 09:12
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
3,445 by rmoretti
Wed, 2018-03-07 08:44
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,785 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
6,250 by Loki01
Thu, 2018-02-15 13:54
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
3,098 by rmoretti
Tue, 2018-02-06 09:47
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
2,252 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
3,132 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
2,270 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Comparative modeling using a two chained template for a one chain structure
by ahmadkhalifa » Mon, 2017-12-18 11:00
1
1,684 by rmoretti
Mon, 2018-01-15 16:14
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
2,371 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
4,227 by smlewis
Sat, 2017-12-23 15:56
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
5,110 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic comparative modelling of a complex
by sdh_h » Sun, 2017-12-17 06:07
0
1,134 by sdh_h
Sun, 2017-12-17 06:07
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,795 by kamau
Wed, 2017-12-13 14:31
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
4,289 by smlewis
Wed, 2017-12-13 09:54
Normal topic How to design the anitgen-antibody interface
by Sunyp_IM » Tue, 2017-12-12 18:44
0
1,275 by Sunyp_IM
Tue, 2017-12-12 18:44
Normal topic how to generate the whole molecule that contains all the symmetric chains
by Sunyp_IM » Sun, 2017-12-10 19:43
0
1,267 by Sunyp_IM
Sun, 2017-12-10 19:43
Normal topic Interesting scoring performance in flexpepdock against random peptides
by ziqi1234 » Fri, 2017-12-08 07:52
0
1,213 by ziqi1234
Fri, 2017-12-08 07:52
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