You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
7 |
1,276 |
by aloshbau Mon, 2021-03-01 20:06 |
|
|
How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
2,199 |
by rmoretti Wed, 2017-03-01 13:10 |
|
|
hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
0 |
284 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
|
|
hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
1 |
863 |
by rmoretti Fri, 2019-03-29 09:45 |
|
|
I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
0 |
87 |
by Wenithor Thu, 2022-01-06 12:20 |
|
|
I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
1 |
531 |
by leygkn Tue, 2020-09-22 22:46 |
|
|
Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
2,472 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
7 |
5,227 |
by lanselibai Tue, 2014-12-02 09:43 |
|
|
Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
2 |
1,030 |
by chenna Wed, 2020-03-04 03:24 |
|
|
in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
11 |
9,724 |
by jarod Mon, 2014-04-21 06:47 |
|
|
Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
2 |
1,637 |
by ashu4487 Sun, 2016-12-11 19:03 |
|
|
Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
9 |
5,311 |
by rpavlov Tue, 2017-06-06 11:45 |
|
|
Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
1 |
1,996 |
by rmoretti Fri, 2014-08-15 08:06 |
|
|
Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
6 |
6,089 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
1 |
870 |
by rmoretti Tue, 2019-04-16 11:07 |
|
|
Input structure by Soler » Mon, 2020-09-28 13:18 |
1 |
513 |
by ssrb Tue, 2020-09-29 12:37 |
|
|
Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
7 |
6,189 |
by eyong123 Wed, 2015-12-09 07:17 |
|
|
Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
1 |
1,544 |
by rmoretti Wed, 2014-11-26 07:51 |
|
|
Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
0 |
709 |
by ziqi1234 Fri, 2017-12-08 07:52 |
|
|
Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
1 |
1,628 |
by smlewis Tue, 2017-02-21 14:10 |
|
|
InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,290 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
3,324 |
by jadolfbr Thu, 2015-09-03 16:18 |
|
|
InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
3 |
3,798 |
by smlewis Fri, 2014-03-07 14:09 |
|
|
InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
3,256 |
by mxp Mon, 2019-08-12 18:42 |
|
|
interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,056 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
1 |
1,118 |
by rmoretti Wed, 2019-07-10 09:47 |
|
|
Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
1,507 |
by rmoretti Wed, 2015-09-09 12:01 |
|
|
Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
2 |
990 |
by ylwang Thu, 2020-03-12 20:42 |
|
|
Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
5 |
3,791 |
by rmoretti Mon, 2015-02-09 12:04 |
|
|
Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
1 |
743 |
by JackMaguire Fri, 2019-11-22 13:45 |
|
|
issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
3 |
985 |
by He Xiao Sun, 2021-04-11 19:29 |
|
|
Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
0 |
245 |
by DGR95 Fri, 2021-05-14 12:51 |
|
|
JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
1,651 |
by rmoretti Sat, 2015-10-31 08:57 |
|
|
jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
6 |
3,165 |
by fradom Tue, 2017-12-05 01:52 |
|
|
JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
2,509 |
by Wizard Sun, 2015-04-26 22:36 |
|
|
kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
1 |
838 |
by bjharris Wed, 2020-07-01 23:25 |
|
|
KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,106 |
by bogac Tue, 2017-03-07 02:11 |
|
|
KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
1,901 |
by smlewis Mon, 2018-09-10 11:48 |
|
|
kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
2,588 |
by a_s_a Mon, 2014-04-21 06:47 |
|
|
Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
2,894 |
by Anpu Tue, 2018-09-25 18:53 |
|
|
latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,006 |
by rmoretti Tue, 2014-11-04 10:33 |
|
|
Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
3,910 |
by lkrathn Mon, 2014-04-21 06:48 |
|
|
ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
1 |
1,897 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
1 |
1,953 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,013 |
by glemmon Mon, 2014-04-21 06:47 |
|
|
ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
46 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
|
|
ligand dock question by sacch » Sun, 2012-05-20 19:49 |
4 |
3,427 |
by sacch Mon, 2014-04-21 06:47 |
|
|
Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
3,888 |
by frichter Mon, 2014-04-21 06:47 |
|
|
Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
1 |
609 |
by matteoferla Mon, 2020-05-04 02:02 |
|
|
Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
1 |
981 |
by rmoretti Tue, 2017-10-17 09:03 |
|
|
Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
1 |
1,546 |
by rmoretti Thu, 2016-06-23 10:55 |
|
|
Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
0 |
402 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
|
|
ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
996 |
by Ruska322 Fri, 2019-09-06 07:13 |
|
|
Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
3,278 |
by rmoretti Mon, 2018-11-12 14:31 |
|
|
Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
2 |
2,087 |
by brspurri Mon, 2017-05-15 11:48 |
|
|
ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
6 |
5,624 |
by rmoretti Wed, 2017-01-11 12:53 |
|
|
Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,057 |
by rmoretti Mon, 2014-05-12 15:08 |
|
|
Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,431 |
by jharamesh Mon, 2014-11-03 12:50 |
|
|
Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
1,987 |
by staciekim Thu, 2017-08-17 17:06 |
|
|
ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
839 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
|
|
ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
702 |
by DGR95 Wed, 2021-04-28 16:13 |
|
|
ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
431 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
|
|
ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
0 |
418 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
|
|
ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
4 |
3,993 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
1,201 |
by YuFei Sat, 2020-05-30 00:12 |
|
|
Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
0 |
504 |
by SWM Fri, 2020-01-24 07:35 |
|
|
limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,148 |
by sacch Mon, 2014-04-21 06:47 |
|
|
Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
6 |
3,932 |
by Loki01 Thu, 2018-02-15 13:54 |
|
|
Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
144 |
by sam_dc Sat, 2021-10-09 05:38 |
|
|
Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
2,632 |
by dfcoelho Tue, 2018-10-16 09:05 |
|
|
loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
926 |
by jadolfbr Fri, 2019-05-10 07:53 |
|
|
Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
2,848 |
by rmoretti Tue, 2016-07-12 09:41 |
|
|
Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
6 |
2,947 |
by smlewis Wed, 2018-08-08 15:48 |
|
|
loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
4,381 |
by lzx32 Mon, 2014-04-21 06:47 |
|
|
loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
1 |
2,073 |
by rmoretti Mon, 2015-05-25 11:30 |
|
|
Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
734 |
by agctomer Thu, 2021-04-08 07:37 |
|
|
Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
1 |
1,114 |
by rmoretti Mon, 2017-03-06 12:39 |
|
|
Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
1,654 |
by rmoretti Sat, 2015-06-20 20:07 |
|
|
Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
4,172 |
by wsgosal Mon, 2014-04-21 06:48 |
|
|
Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
3,390 |
by jadolfbr Mon, 2014-04-21 06:48 |
|
|
loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
6,548 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
2,502 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,358 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
1 |
1,687 |
by rmoretti Mon, 2015-05-25 12:30 |
|
|
LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
1 |
794 |
by matteoferla Thu, 2020-07-02 07:27 |
|
|
loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
14 |
10,235 |
by lanselibai Fri, 2014-11-07 02:06 |
|
|
Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
6 |
3,573 |
by Corvin Tue, 2019-10-15 01:12 |
|
|
make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,083 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Make Fragments by Run » Mon, 2013-11-11 05:31 |
1 |
2,118 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
906 |
by almeida85 Tue, 2020-09-01 01:29 |
|
|
make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
3,851 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
1 |
617 |
by brspurri Wed, 2021-01-20 08:11 |
|
|
matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
5 |
4,762 |
by siciliu Thu, 2014-04-10 09:50 |
|
|
MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
2,785 |
by JadAbbass Mon, 2014-04-21 06:48 |
|
|
membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
3,529 |
by ytao Mon, 2014-04-21 06:47 |
|
|
membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
0 |
1,814 |
by fglaser Mon, 2014-04-21 06:47 |
|
|
Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
1 |
894 |
by rmoretti Mon, 2019-06-24 14:39 |
|
|
Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
1,168 |
by benhardy Wed, 2020-09-30 04:24 |
|
|
Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
1 |
516 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
|
|
Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
2,411 |
by chelsell Wed, 2014-10-08 12:25 |
Log in to post new content in the forum.
