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Rosetta 3 - Applications
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
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1,987 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
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1,283 |
by lanselibai Tue, 2020-05-12 20:25 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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1,857 |
by msardejani Mon, 2016-12-12 17:48 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
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661 |
by ssrb Mon, 2020-06-22 13:12 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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2,871 |
by lanselibai Mon, 2014-10-06 15:30 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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1,966 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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How to use -cst_fa_file and -relax:constrain_relax_to_native_coords at the same time by Anatol » Thu, 2012-11-29 14:12 |
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8,655 |
by smlewis Mon, 2014-04-21 06:47 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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555 |
by everyday847 Sun, 2021-04-04 12:48 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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1,628 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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2,569 |
by rmoretti Sat, 2015-07-11 13:38 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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1,720 |
by aloshbau Mon, 2021-03-01 20:06 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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2,413 |
by rmoretti Wed, 2017-03-01 13:10 |
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hpatch commands and how to identify patches by Bianca Oliva » Thu, 2021-04-29 04:02 |
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418 |
by Bianca Oliva Thu, 2021-04-29 04:02 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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969 |
by rmoretti Fri, 2019-03-29 09:45 |
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I need help with cst file the paper: De Novo Computational Design of Retro-Aldol Enzymes by Wenithor » Thu, 2022-01-06 12:20 |
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230 |
by Wenithor Thu, 2022-01-06 12:20 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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663 |
by leygkn Tue, 2020-09-22 22:46 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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2,618 |
by jadolfbr Mon, 2014-04-21 06:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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5,634 |
by lanselibai Tue, 2014-12-02 09:43 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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72 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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1,192 |
by chenna Wed, 2020-03-04 03:24 |
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in silico affinity maturation design by jarod » Mon, 2013-05-20 02:07 |
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10,309 |
by jarod Mon, 2014-04-21 06:47 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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1,776 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
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5,827 |
by rpavlov Tue, 2017-06-06 11:45 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,127 |
by rmoretti Fri, 2014-08-15 08:06 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
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6,410 |
by rmoretti Mon, 2014-04-21 06:47 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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995 |
by rmoretti Tue, 2019-04-16 11:07 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
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624 |
by ssrb Tue, 2020-09-29 12:37 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
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6,605 |
by eyong123 Wed, 2015-12-09 07:17 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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1,656 |
by rmoretti Wed, 2014-11-26 07:51 |
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Interesting scoring performance in flexpepdock against random peptides by ziqi1234 » Fri, 2017-12-08 07:52 |
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775 |
by ziqi1234 Fri, 2017-12-08 07:52 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,758 |
by smlewis Tue, 2017-02-21 14:10 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,415 |
by smlewis Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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3,595 |
by jadolfbr Thu, 2015-09-03 16:18 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
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4,039 |
by smlewis Fri, 2014-03-07 14:09 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
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3,889 |
by mxp Mon, 2019-08-12 18:42 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
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2,175 |
by rmoretti Mon, 2014-04-21 06:48 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,295 |
by rmoretti Wed, 2019-07-10 09:47 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,623 |
by rmoretti Wed, 2015-09-09 12:01 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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1,170 |
by ylwang Thu, 2020-03-12 20:42 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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4,085 |
by rmoretti Mon, 2015-02-09 12:04 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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883 |
by JackMaguire Fri, 2019-11-22 13:45 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
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1,313 |
by He Xiao Sun, 2021-04-11 19:29 |
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Issues with modifying dock.xml for multiple ligand docking by DGR95 » Fri, 2021-05-14 12:51 |
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358 |
by DGR95 Fri, 2021-05-14 12:51 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
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1,784 |
by rmoretti Sat, 2015-10-31 08:57 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
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3,471 |
by fradom Tue, 2017-12-05 01:52 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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2,682 |
by Wizard Sun, 2015-04-26 22:36 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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989 |
by bjharris Wed, 2020-07-01 23:25 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
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2,296 |
by bogac Tue, 2017-03-07 02:11 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
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2,122 |
by smlewis Mon, 2018-09-10 11:48 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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2,722 |
by a_s_a Mon, 2014-04-21 06:47 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
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3,089 |
by Anpu Tue, 2018-09-25 18:53 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,164 |
by rmoretti Tue, 2014-11-04 10:33 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,050 |
by lkrathn Mon, 2014-04-21 06:48 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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2,013 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,045 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
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3,199 |
by glemmon Mon, 2014-04-21 06:47 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
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248 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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3,657 |
by sacch Mon, 2014-04-21 06:47 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
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4,080 |
by frichter Mon, 2014-04-21 06:47 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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732 |
by matteoferla Mon, 2020-05-04 02:02 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,121 |
by rmoretti Tue, 2017-10-17 09:03 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
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1,655 |
by rmoretti Thu, 2016-06-23 10:55 |
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Ligand docking with constraint by Alison_Yajie » Wed, 2020-06-24 12:34 |
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498 |
by Alison_Yajie Wed, 2020-06-24 12:34 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,131 |
by Ruska322 Fri, 2019-09-06 07:13 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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3,595 |
by rmoretti Mon, 2018-11-12 14:31 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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2,272 |
by brspurri Mon, 2017-05-15 11:48 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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5,960 |
by rmoretti Wed, 2017-01-11 12:53 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,543 |
by jharamesh Mon, 2014-11-03 12:50 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,187 |
by rmoretti Mon, 2014-05-12 15:08 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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2,157 |
by staciekim Thu, 2017-08-17 17:06 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
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998 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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1,022 |
by DGR95 Wed, 2021-04-28 16:13 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-07-02 07:05 |
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512 |
by Alison_Yajie Thu, 2020-07-02 07:10 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
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524 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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4,201 |
by rmoretti Mon, 2014-04-21 06:47 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
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1,410 |
by YuFei Sat, 2020-05-30 00:12 |
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Limit on backbone movement in relax? by SWM » Fri, 2020-01-24 07:35 |
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588 |
by SWM Fri, 2020-01-24 07:35 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
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2,296 |
by sacch Mon, 2014-04-21 06:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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4,364 |
by Loki01 Thu, 2018-02-15 13:54 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
256 |
by sam_dc Sat, 2021-10-09 05:38 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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85 |
by seayoung lee Fri, 2022-05-27 02:45 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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2,982 |
by dfcoelho Tue, 2018-10-16 09:05 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,050 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
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3,036 |
by rmoretti Tue, 2016-07-12 09:41 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
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3,392 |
by smlewis Wed, 2018-08-08 15:48 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
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4,701 |
by lzx32 Mon, 2014-04-21 06:47 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,198 |
by rmoretti Mon, 2015-05-25 11:30 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
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977 |
by agctomer Thu, 2021-04-08 07:37 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,215 |
by rmoretti Mon, 2017-03-06 12:39 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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1,793 |
by rmoretti Sat, 2015-06-20 20:07 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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4,412 |
by wsgosal Mon, 2014-04-21 06:48 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
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3,582 |
by jadolfbr Mon, 2014-04-21 06:48 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
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7,066 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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2,619 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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3,562 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,806 |
by rmoretti Mon, 2015-05-25 12:30 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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947 |
by matteoferla Thu, 2020-07-02 07:27 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
14 |
10,945 |
by lanselibai Fri, 2014-11-07 02:06 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
6 |
4,212 |
by Corvin Tue, 2019-10-15 01:12 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
3 |
4,297 |
by smlewis Mon, 2014-04-21 06:47 |
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