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Rosetta 3 - Applications
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
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2,088 |
by rmoretti Fri, 2016-10-14 08:56 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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2,094 |
by rmoretti Fri, 2016-06-17 10:15 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
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2,097 |
by dyu Thu, 2017-09-28 18:54 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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2,100 |
by smlewis Mon, 2017-02-06 20:46 |
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Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
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2,104 |
by katherinemccoy Mon, 2023-03-13 19:10 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
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2,112 |
by haom Tue, 2020-06-16 05:55 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
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2,112 |
by jadolfbr Fri, 2014-10-31 08:45 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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2,115 |
by fred Mon, 2014-04-21 06:47 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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2,117 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
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2,117 |
by Corvin Wed, 2020-11-25 02:58 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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2,121 |
by rmoretti Tue, 2015-11-24 16:16 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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2,123 |
by rmoretti Sat, 2015-06-20 20:07 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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2,124 |
by rmoretti Fri, 2015-10-02 12:30 |
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Alanine Scanning for 1 Protein (no interface) by mags33 » Fri, 2019-10-25 10:08 |
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2,127 |
by mags33 Wed, 2019-11-06 09:35 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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2,132 |
by smlewis Tue, 2017-02-21 14:10 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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2,134 |
by rmoretti Mon, 2014-05-26 09:29 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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2,144 |
by tevang Mon, 2014-04-21 06:47 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
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2,146 |
by Danielsebas Thu, 2019-09-05 03:35 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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2,150 |
by lanselibai Thu, 2015-01-29 00:50 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
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2,157 |
by smlewis Fri, 2017-06-16 07:35 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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2,157 |
by smlewis Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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2,160 |
by rmoretti Mon, 2015-05-25 12:30 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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2,160 |
by fglaser Mon, 2014-04-21 06:47 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
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2,162 |
by rmoretti Sat, 2015-10-31 08:57 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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2,163 |
by rmoretti Wed, 2016-11-30 07:46 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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2,171 |
by rmoretti Fri, 2016-10-14 08:42 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
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2,172 |
by rmoretti Tue, 2020-07-28 08:24 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
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2,173 |
by dnamkr Thu, 2019-12-26 10:22 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,178 |
by smlewis Mon, 2014-07-07 11:58 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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2,188 |
by rmoretti Mon, 2015-02-09 12:33 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,194 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
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2,199 |
by gszwabowski Wed, 2019-06-26 10:25 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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2,200 |
by vmulligan Mon, 2020-03-02 13:40 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
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2,216 |
by rmoretti Thu, 2018-09-20 09:19 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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2,218 |
by jadolfbr Wed, 2015-09-09 12:35 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,219 |
by ashu4487 Sun, 2016-12-11 19:03 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
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2,220 |
by nc-ring Tue, 2021-05-04 12:26 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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2,222 |
by Corvin Tue, 2019-08-27 00:46 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,231 |
by rmoretti Wed, 2017-01-11 13:00 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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2,233 |
by rmoretti Tue, 2015-11-24 16:07 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
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2,234 |
by aep Fri, 2016-07-01 06:54 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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2,238 |
by rmoretti Mon, 2017-03-13 08:01 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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2,244 |
by gsuchunli Mon, 2016-07-25 13:56 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
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2,255 |
by smlewis Mon, 2014-04-21 06:47 |
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issues about cstfile in RosettaMatch by Nicole Deng » Fri, 2020-12-18 05:44 |
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2,265 |
by He Xiao Sun, 2021-04-11 19:29 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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2,267 |
by Danielsebas Wed, 2019-09-11 00:44 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
2,271 |
by maruhuang Thu, 2019-09-26 18:52 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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2,282 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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2,286 |
by happycaapi Tue, 2021-06-29 15:35 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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2,287 |
by smlewis Wed, 2021-12-08 13:02 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
2,289 |
by msardejani Mon, 2016-12-12 17:48 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
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2,290 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
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2,290 |
by cossio Sun, 2018-03-11 09:12 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
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2,297 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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2,313 |
by smlewis Mon, 2014-04-21 06:47 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
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2,315 |
by smlewis Mon, 2014-04-21 06:47 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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2,315 |
by aep Sat, 2016-08-13 13:03 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,324 |
by rmoretti Mon, 2016-09-05 11:29 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,327 |
by rmoretti Mon, 2014-04-21 06:48 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,327 |
by ytao Mon, 2014-04-21 06:48 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,330 |
by smlewis Mon, 2014-04-21 06:47 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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2,330 |
by rmoretti Wed, 2019-09-18 10:21 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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2,333 |
by brspurri Tue, 2020-08-18 09:57 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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2,335 |
by rmoretti Mon, 2014-07-21 10:51 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,337 |
by smlewis Mon, 2014-04-21 06:47 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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2,340 |
by rmoretti Tue, 2015-07-14 14:59 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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2,348 |
by Martin Floor Tue, 2020-09-22 00:48 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,348 |
by smlewis Mon, 2014-04-21 06:48 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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2,356 |
by AJVincelli Sun, 2018-11-25 11:29 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,357 |
by smlewis Mon, 2014-04-21 06:47 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,362 |
by kamau Wed, 2014-09-24 11:35 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
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2,375 |
by marinok Mon, 2020-05-11 12:48 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,380 |
by swarekwood Fri, 2017-08-25 05:08 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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2,384 |
by smlewis Mon, 2014-04-21 06:48 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
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2,385 |
by smlewis Mon, 2014-04-21 06:47 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
1 |
2,392 |
by smlewis Tue, 2017-08-15 23:19 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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2,397 |
by rmoretti Mon, 2014-04-21 06:48 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,397 |
by smlewis Fri, 2018-09-14 10:34 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
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2,404 |
by rmoretti Wed, 2015-03-25 12:39 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,406 |
by esozdemir Thu, 2019-06-13 12:19 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,417 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
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2,429 |
by smlewis Mon, 2014-04-21 06:47 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
2 |
2,436 |
by bp Thu, 2016-12-22 07:54 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
2 |
2,436 |
by Martin Floor Mon, 2017-05-15 11:13 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,441 |
by aaj Wed, 2016-02-24 07:37 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
1 |
2,452 |
by smlewis Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
2,458 |
by smlewis Mon, 2014-04-21 06:47 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,459 |
by nawsad Mon, 2014-04-21 06:47 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
2,460 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
1 |
2,468 |
by rmoretti Wed, 2014-12-03 19:07 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,469 |
by jrcf Mon, 2016-02-15 17:59 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,486 |
by danpf Fri, 2020-02-21 18:32 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,490 |
by ays Tue, 2014-09-30 08:31 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,491 |
by smlewis Mon, 2014-04-21 06:47 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
1 |
2,496 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,501 |
by rmoretti Mon, 2014-05-12 15:08 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
2,504 |
by ctqwong Thu, 2021-03-18 02:04 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,506 |
by smlewis Wed, 2018-12-12 16:51 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,507 |
by jadolfbr Mon, 2014-04-21 06:48 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
2 |
2,518 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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