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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
1,823 by zadie1118
Mon, 2014-04-21 06:47
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
1,828 by tevang
Mon, 2014-04-21 06:47
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
1,829 by rmoretti
Tue, 2015-11-24 16:07
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,834 by brspurri
Mon, 2014-04-21 06:47
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
1,843 by everyday847
Wed, 2020-05-20 08:52
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
1,843 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
1,845 by danpf
Fri, 2019-09-06 11:29
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
1,850 by fred
Mon, 2014-04-21 06:47
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
1,855 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
1,858 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
1,876 by fglaser
Mon, 2014-04-21 06:47
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,877 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
1,881 by lanselibai
Thu, 2015-01-29 00:50
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
1,883 by vmulligan
Fri, 2020-04-10 02:54
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
1,886 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
1,886 by aep
Sat, 2016-08-13 13:03
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
1,905 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
1,908 by smlewis
Tue, 2017-08-15 23:19
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
1,915 by smlewis
Mon, 2019-09-23 11:42
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
1,916 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
1,916 by rmoretti
Tue, 2020-07-14 10:54
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
1,923 by smlewis
Mon, 2018-10-15 08:42
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,936 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
1,938 by danpf
Tue, 2020-05-12 10:58
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,939 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,943 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,946 by bp
Thu, 2016-12-22 07:54
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
1,946 by aaj
Wed, 2016-02-24 07:37
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
1,959 by rmoretti
Tue, 2015-07-14 14:59
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
1,963 by jrcf
Mon, 2016-02-15 17:59
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
1,971 by smlewis
Mon, 2014-04-21 06:47
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
1,978 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,981 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,983 by smlewis
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,991 by smlewis
Mon, 2014-04-21 06:47
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
1,991 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
1,997 by smlewis
Fri, 2017-01-27 07:20
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
1,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,001 by smlewis
Mon, 2014-04-21 06:47
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
2,003 by ytao
Mon, 2014-04-21 06:48
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
2,006 by rmoretti
Wed, 2015-03-25 12:39
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,010 by rmoretti
Wed, 2014-12-03 19:07
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
2,010 by ays
Tue, 2014-09-30 08:31
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,019 by dantimatter
Wed, 2019-10-30 09:43
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
2,021 by rmoretti
Tue, 2017-08-22 09:03
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
2,022 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
2,024 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
2,027 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
2,028 by smlewis
Mon, 2014-04-21 06:48
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
2,032 by nawsad
Mon, 2014-04-21 06:47
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
2,035 by rmoretti
Mon, 2016-09-05 11:10
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
2,040 by rmoretti
Fri, 2016-04-29 08:26
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
2,046 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,050 by kamau
Wed, 2014-09-24 11:35
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
2,051 by smlewis
Mon, 2014-04-21 06:48
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
2,053 by smlewis
Mon, 2014-04-21 06:47
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
2,056 by felipet
Thu, 2014-07-17 10:13
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
2,057 by eyong123
Wed, 2015-04-22 11:33
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
2,060 by xingqing326
Tue, 2020-04-21 19:11
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
2,060 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
2,061 by mdidonato
Wed, 2014-06-04 14:55
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,063 by smlewis
Mon, 2018-09-10 11:48
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
2,067 by attesor
Mon, 2015-10-26 09:01
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
2,076 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
2,076 by renedominik
Tue, 2020-02-18 01:36
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
2,086 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,091 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
2,096 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,102 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,106 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
2,107 by staciekim
Thu, 2017-08-17 17:06
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,121 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,123 by smlewis
Mon, 2014-04-21 06:47
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
2,128 by rmoretti
Tue, 2014-11-04 10:33
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,129 by cossio
Fri, 2018-10-12 04:43
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
2,129 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,130 by cossio
Fri, 2018-05-18 09:51
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
2,143 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
2,145 by e3lm
Tue, 2021-09-14 10:02
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,145 by David Weis
Mon, 2017-03-13 06:40
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
2,146 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,147 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,150 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,156 by rmoretti
Mon, 2014-05-12 15:08
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,158 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
2,160 by rmoretti
Fri, 2020-07-10 09:59
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,169 by rmoretti
Mon, 2015-05-25 11:30
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
2,171 by cam11
Wed, 2014-08-13 10:06
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
2,176 by shadrinams
Wed, 2018-03-14 07:46
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,179 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
2,182 by ajasja
Wed, 2019-05-15 15:40
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,189 by smlewis
Mon, 2017-01-23 06:26
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
2,193 by rmoretti
Wed, 2018-03-07 08:44
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,196 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,201 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,205 by cdbahl
Sat, 2017-02-18 13:02
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
2,207 by sn
Thu, 2017-04-20 21:43
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,207 by smlewis
Mon, 2014-04-21 06:48
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,224 by nawsad
Mon, 2014-04-21 06:48
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