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Rosetta 3 - Applications
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
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1,956 |
by Corvin Tue, 2019-08-27 00:46 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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1,957 |
by rmoretti Sat, 2015-06-20 20:07 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
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1,957 |
by brspurri Mon, 2014-04-21 06:47 |
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DNA Interface design by zadie1118 » Wed, 2011-06-22 07:05 |
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1,958 |
by zadie1118 Mon, 2014-04-21 06:47 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
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1,964 |
by ctqwong Thu, 2021-03-18 02:04 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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1,965 |
by rmoretti Wed, 2016-11-30 07:46 |
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SPLINE EPR_DISTANCE Constraint Error by mmw88 » Tue, 2018-09-18 14:39 |
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1,970 |
by rmoretti Thu, 2018-09-20 09:19 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
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1,970 |
by rmoretti Sat, 2015-10-31 08:57 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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1,972 |
by Ameya Tue, 2022-12-27 11:21 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
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1,975 |
by gszwabowski Wed, 2019-06-26 10:25 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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1,976 |
by happycaapi Tue, 2021-06-29 15:35 |
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behind threading protocol by fred » Tue, 2011-10-25 05:37 |
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1,981 |
by fred Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,989 |
by rmoretti Mon, 2015-05-25 12:30 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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1,989 |
by rmoretti Fri, 2016-10-14 08:42 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
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1,993 |
by tevang Mon, 2014-04-21 06:47 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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1,993 |
by smlewis Mon, 2014-04-21 06:47 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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1,998 |
by ashu4487 Sun, 2016-12-11 19:03 |
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how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
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1,998 |
by rmoretti Wed, 2019-09-18 10:21 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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2,000 |
by Danielsebas Wed, 2019-09-11 00:44 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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2,002 |
by rmoretti Mon, 2017-03-13 08:01 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
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2,003 |
by cossio Sun, 2018-03-11 09:12 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,004 |
by smlewis Mon, 2014-07-07 11:58 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
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2,008 |
by aep Fri, 2016-07-01 06:54 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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2,009 |
by rmoretti Mon, 2015-02-09 12:33 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
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2,021 |
by yels Wed, 2021-03-31 18:31 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,022 |
by jadolfbr Fri, 2014-10-31 09:00 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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2,023 |
by fglaser Mon, 2014-04-21 06:47 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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2,026 |
by lanselibai Thu, 2015-01-29 00:50 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,027 |
by rmoretti Wed, 2017-01-11 13:00 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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2,045 |
by rmoretti Tue, 2015-11-24 16:07 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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2,051 |
by jadolfbr Wed, 2015-09-09 12:35 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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2,073 |
by gsuchunli Mon, 2016-07-25 13:56 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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2,074 |
by msardejani Mon, 2016-12-12 17:48 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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2,082 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
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2,087 |
by smlewis Fri, 2018-09-14 10:34 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
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2,087 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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2,100 |
by esozdemir Thu, 2019-06-13 12:19 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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2,105 |
by danpf Fri, 2020-02-21 18:32 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
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2,108 |
by Payne Tue, 2022-06-21 07:25 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
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2,112 |
by smlewis Mon, 2014-04-21 06:47 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
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2,114 |
by smlewis Wed, 2018-12-12 16:51 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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2,117 |
by aep Sat, 2016-08-13 13:03 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,118 |
by rmoretti Mon, 2016-09-05 11:29 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
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2,136 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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2,147 |
by jadolfbr Wed, 2020-05-06 11:37 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
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2,150 |
by smlewis Mon, 2014-04-21 06:47 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
2,154 |
by rmoretti Tue, 2015-07-14 14:59 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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2,155 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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2,157 |
by brspurri Wed, 2020-06-03 13:20 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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2,157 |
by rmoretti Mon, 2014-07-21 10:51 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,161 |
by smlewis Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,164 |
by swarekwood Fri, 2017-08-25 05:08 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
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2,169 |
by smlewis Mon, 2014-04-21 06:47 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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2,172 |
by ssrb Fri, 2020-08-14 09:18 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,177 |
by ytao Mon, 2014-04-21 06:48 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,181 |
by rmoretti Mon, 2014-04-21 06:48 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,183 |
by smlewis Mon, 2014-04-21 06:47 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
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2,186 |
by jadolfbr Sun, 2020-03-01 14:54 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,187 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
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2,188 |
by Astghik Thu, 2020-10-15 00:48 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
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2,188 |
by smlewis Mon, 2014-04-21 06:47 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,196 |
by smlewis Tue, 2017-08-15 23:19 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,201 |
by smlewis Mon, 2014-04-21 06:48 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,202 |
by Martin Floor Mon, 2017-05-15 11:13 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
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2,208 |
by rmoretti Wed, 2015-03-25 12:39 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
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2,212 |
by aaj Wed, 2016-02-24 07:37 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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2,218 |
by bp Thu, 2016-12-22 07:54 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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2,223 |
by rmoretti Wed, 2014-12-03 19:07 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,226 |
by kamau Wed, 2014-09-24 11:35 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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2,229 |
by smlewis Mon, 2014-04-21 06:48 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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2,234 |
by jrcf Mon, 2016-02-15 17:59 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
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2,240 |
by jadolfbr Sun, 2020-12-06 17:41 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,248 |
by nawsad Mon, 2014-04-21 06:47 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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2,251 |
by rmoretti Mon, 2014-04-21 06:48 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
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2,259 |
by ays Tue, 2014-09-30 08:31 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
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2,270 |
by smlewis Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,273 |
by smlewis Mon, 2014-04-21 06:47 |
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How to write down a connection between ligand's atom and metal ion from enzyme? by Corvin » Mon, 2021-02-15 06:54 |
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2,278 |
by aloshbau Mon, 2021-03-01 20:06 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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2,285 |
by everyday847 Wed, 2020-05-20 08:52 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
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2,287 |
by smlewis Mon, 2014-04-21 06:47 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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2,292 |
by danpf Fri, 2019-09-06 11:29 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,294 |
by smlewis Mon, 2018-10-15 08:42 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,304 |
by mdidonato Wed, 2014-06-04 14:55 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,304 |
by jingwei xu Wed, 2016-05-04 23:26 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,306 |
by rmoretti Fri, 2016-04-29 08:26 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,309 |
by rmoretti Tue, 2017-04-25 06:41 |
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pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
2,310 |
by Pappmaschee Thu, 2020-12-17 02:24 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
2,312 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,313 |
by felipet Thu, 2014-07-17 10:13 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
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2,317 |
by eyong123 Wed, 2015-04-22 11:33 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,321 |
by attesor Mon, 2015-10-26 09:01 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,321 |
by shrutikhare Fri, 2014-04-18 23:11 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,322 |
by smlewis Mon, 2014-04-21 06:47 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,322 |
by rmoretti Mon, 2016-09-05 11:10 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,325 |
by rmoretti Fri, 2014-08-15 08:06 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,337 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,345 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,347 |
by rmoretti Mon, 2014-05-12 15:08 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,350 |
by smlewis Mon, 2014-04-21 06:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,350 |
by jadolfbr Mon, 2014-04-21 06:48 |
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