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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic RoseTTaFold
by ozsolomon » Thu, 2021-10-07 05:27
2
2,221 by ozsolomon
Thu, 2021-10-07 14:25
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
2,222 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
2,227 by dnamkr
Mon, 2019-12-30 11:43
Normal topic "Install_dependencies.pl" gives "Aborted" when downloading "nr" database?
by Danielsebas » Sat, 2019-09-14 08:53
3
2,229 by danpf
Mon, 2019-09-16 09:51
Normal topic behind threading protocol
by fred » Tue, 2011-10-25 05:37
0
2,230 by fred
Mon, 2014-04-21 06:47
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
2,231 by rmoretti
Fri, 2016-06-17 10:15
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
2,231 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
2,232 by sgourn
Tue, 2015-08-18 18:25
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
2,239 by rmoretti
Fri, 2016-10-14 08:56
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
2,240 by lanselibai
Thu, 2015-01-29 00:50
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
2,241 by DGR95
Wed, 2021-04-28 16:13
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
2,241 by rmoretti
Sat, 2015-06-20 20:07
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
2,241 by smlewis
Mon, 2017-02-06 20:46
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
2,244 by smlewis
Thu, 2020-05-21 21:05
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
2,244 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
2,254 by rmoretti
Mon, 2014-05-26 09:29
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
2,256 by tevang
Mon, 2014-04-21 06:47
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
2,257 by fglaser
Mon, 2014-04-21 06:47
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
2,259 by rmoretti
Fri, 2015-10-02 12:30
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
2,267 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Lots of Prepacking Jobs for Snugdock Failing
by katherinemccoy » Tue, 2023-02-28 18:17
0
2,270 by katherinemccoy
Mon, 2023-03-13 19:10
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
2,272 by Corvin
Wed, 2019-06-12 00:04
Normal topic Transmembrane helix fold-and-dock?
by sarah_b » Tue, 2020-05-12 02:09
3
2,273 by jkleman
Tue, 2020-05-19 15:02
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
2,279 by rmoretti
Tue, 2015-11-24 16:16
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
2,280 by rmoretti
Mon, 2015-05-25 12:30
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
2,283 by tsztain
Mon, 2019-02-18 09:55
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
2,284 by dyu
Thu, 2017-09-28 18:54
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
2,285 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
2,286 by smlewis
Tue, 2017-02-21 14:10
Normal topic Does it make sense if I do backrub after sequence design?
by johnnytam100 » Thu, 2019-08-15 05:15
3
2,294 by johnnytam100
Fri, 2019-08-16 00:20
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
2,308 by smlewis
Mon, 2014-07-07 11:58
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
2,314 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
2,318 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
2,322 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
2,323 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
2,341 by sam_dc
Mon, 2021-04-12 07:24
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
2,345 by rmoretti
Sat, 2015-10-31 08:57
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
2,346 by smlewis
Fri, 2017-06-16 07:35
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
2,357 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
2,367 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
2,373 by rmoretti
Wed, 2017-01-11 13:00
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
2,376 by mags33
Wed, 2019-11-06 09:35
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
2,377 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
2,380 by dnamkr
Thu, 2019-12-26 10:22
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
2,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
2,385 by rmoretti
Tue, 2015-11-24 16:07
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
2,387 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
2,392 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic ligand_docking
by yang » Thu, 2023-02-16 04:37
2
2,402 by yang
Wed, 2023-02-22 19:18
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
2,406 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
2,407 by smlewis
Mon, 2014-04-21 06:47
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
2,408 by ashu4487
Sun, 2016-12-11 19:03
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
2,410 by haom
Tue, 2020-06-16 05:55
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
2,417 by rmoretti
Thu, 2018-09-20 09:19
Normal topic How to restart RASREC run
by aep » Fri, 2016-07-01 04:39
2
2,421 by aep
Fri, 2016-07-01 06:54
Normal topic snugdock(sequence position requested was greater than the number of residues in the pose)
by lei » Thu, 2023-01-12 01:40
5
2,433 by lei
Fri, 2023-01-20 08:11
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
2,435 by smlewis
Mon, 2014-04-21 06:47
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
2,435 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
2,440 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
2,445 by smlewis
Mon, 2014-04-21 06:47
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
2,445 by ytao
Mon, 2014-04-21 06:48
Normal topic A problem with "make_fragments.pl" script dependencies
by Corvin » Fri, 2019-08-16 04:30
2
2,451 by Corvin
Tue, 2019-08-27 00:46
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
2,451 by kamau
Wed, 2014-09-24 11:35
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
2,457 by smlewis
Mon, 2014-04-21 06:48
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
2,459 by smlewis
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,463 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
2,463 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
2,478 by smlewis
Mon, 2014-04-21 06:47
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
2,480 by rmoretti
Tue, 2015-07-14 14:59
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
2,481 by msardejani
Mon, 2016-12-12 17:48
Normal topic How to make new VALL database?
by Danielsebas » Sun, 2019-09-08 02:16
2
2,485 by Danielsebas
Wed, 2019-09-11 00:44
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
2,488 by rmoretti
Tue, 2020-07-28 08:24
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
2,489 by vmulligan
Mon, 2020-03-02 13:40
Normal topic Collecting all decoys from batch files
by aep » Sun, 2016-08-07 12:23
2
2,490 by aep
Sat, 2016-08-13 13:03
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
2,495 by rmoretti
Mon, 2016-09-05 11:29
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
2,507 by smlewis
Mon, 2014-04-21 06:48
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
2,507 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
2,516 by Corvin
Wed, 2020-11-25 02:58
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,529 by smlewis
Mon, 2014-04-21 06:47
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
2,532 by smlewis
Mon, 2014-04-21 06:47
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
2,533 by smlewis
Tue, 2017-08-15 23:19
Normal topic errors about RIFdocking
by sia » Sun, 2022-07-24 20:45
7
2,542 by ng98
Mon, 2024-01-08 16:24
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
2,545 by maruhuang
Thu, 2019-09-26 18:52
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
2,553 by rmoretti
Wed, 2015-03-25 12:39
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
2,564 by cossio
Sun, 2018-03-11 09:12
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
2,573 by happycaapi
Tue, 2021-06-29 15:35
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
2,583 by rmoretti
Wed, 2019-09-18 10:21
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
2,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
2,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
2,585 by swarekwood
Fri, 2017-08-25 05:08
Normal topic getting a3m files
by alonwenger » Wed, 2021-12-15 02:38
2
2,588 by alonwenger
Sat, 2021-12-18 12:32
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,613 by smlewis
Mon, 2014-04-21 06:47
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
2,618 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,622 by smlewis
Mon, 2014-04-21 06:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,625 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
2,628 by aaj
Wed, 2016-02-24 07:37
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,629 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
2,629 by nawsad
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
2,632 by esozdemir
Thu, 2019-06-13 12:19
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,632 by rmoretti
Wed, 2014-12-03 19:07
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