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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
1,810 by cossio
Fri, 2018-10-12 04:43
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,819 by rmoretti
Tue, 2017-08-22 09:03
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
1,829 by rmoretti
Tue, 2017-04-25 06:41
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,832 by smlewis
Mon, 2014-04-21 06:47
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
1,834 by smlewis
Mon, 2014-04-21 06:47
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
1,836 by rmoretti
Tue, 2015-07-14 14:59
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
1,843 by cossio
Fri, 2018-05-18 09:51
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
1,846 by ajasja
Wed, 2019-05-15 15:40
Normal topic Enzyme design output silent file and score file
by deltag » Fri, 2012-09-28 13:07
1
1,854 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,863 by rmoretti
Fri, 2016-04-29 08:26
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
1,867 by rmoretti
Wed, 2014-12-03 19:07
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
1,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
1,872 by ays
Tue, 2014-09-30 08:31
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
1,872 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
1,875 by nawsad
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
1,876 by smlewis
Mon, 2014-04-21 06:47
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,877 by rmoretti
Mon, 2016-09-05 11:10
Normal topic trouble in floppytail modelling
by ytao » Thu, 2013-06-27 13:15
1
1,883 by ytao
Mon, 2014-04-21 06:48
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
1,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
1,889 by attesor
Mon, 2015-10-26 09:01
Normal topic fold and dock protocol not working
by ytao » Mon, 2012-11-26 15:33
1
1,889 by smlewis
Mon, 2014-04-21 06:47
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
1,894 by smlewis
Mon, 2014-04-21 06:47
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,898 by eyong123
Wed, 2015-04-22 11:33
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
1,900 by felipet
Thu, 2014-07-17 10:13
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
1,901 by rmoretti
Wed, 2015-03-25 12:39
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
1,902 by asbelx
Mon, 2018-06-18 22:34
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
1,902 by rmoretti
Wed, 2018-03-07 08:44
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
1,903 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
1,910 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
1,912 by rmoretti
Mon, 2018-11-12 14:35
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
1,917 by staciekim
Thu, 2017-08-17 17:06
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
1,919 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
1,920 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Comparative modeling
by MRH » Mon, 2013-08-19 23:08
1
1,920 by smlewis
Mon, 2014-04-21 06:48
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
1,921 by mdidonato
Wed, 2014-06-04 14:55
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
1,930 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
1,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
1,938 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fixing and Building disulfide bonds in homology modeling
by kamau » Wed, 2014-09-24 11:33
0
1,944 by kamau
Wed, 2014-09-24 11:35
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
1,946 by rmoretti
Tue, 2014-11-04 10:33
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,947 by smlewis
Mon, 2014-04-21 06:48
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
1,948 by rmoretti
Thu, 2018-06-28 12:58
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
1,958 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
1,958 by kalabharath
Wed, 2015-04-29 16:21
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
1,961 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
1,962 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
1,963 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
1,978 by David Weis
Mon, 2017-03-13 06:40
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
1,983 by rayyoung
Thu, 2021-11-18 10:13
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
1,993 by sn
Thu, 2017-04-20 21:43
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
1,995 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
1,999 by rmoretti
Fri, 2015-01-02 09:43
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
1,999 by subha
Fri, 2018-04-20 12:49
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,000 by rmoretti
Mon, 2014-05-12 15:08
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,004 by rmoretti
Mon, 2015-05-25 11:30
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,010 by Loki01
Thu, 2018-04-12 08:28
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,015 by rmoretti
Tue, 2017-03-28 08:51
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,016 by smlewis
Mon, 2017-01-23 06:26
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
2,016 by rmoretti
Mon, 2014-04-21 06:48
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
2,017 by cam11
Wed, 2014-08-13 10:06
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,025 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
2,026 by rmoretti
Tue, 2019-07-09 10:13
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,038 by brspurri
Mon, 2017-05-15 11:48
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
2,043 by bogac
Tue, 2017-03-07 02:11
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,046 by smlewis
Mon, 2014-04-21 06:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,049 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,064 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,070 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
2,073 by ashu4487
Mon, 2018-07-16 19:24
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,077 by smlewis
Mon, 2014-04-21 06:48
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,082 by sushreet
Tue, 2014-08-26 13:02
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,082 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
2,087 by rmoretti
Fri, 2019-03-29 09:30
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
2,089 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,090 by smlewis
Mon, 2014-04-21 06:47
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,095 by rmoretti
Wed, 2015-03-25 11:33
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,104 by sacch
Mon, 2014-04-21 06:47
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,110 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,111 by sn
Mon, 2017-03-06 10:03
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,114 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,117 by nawsad
Mon, 2014-04-21 06:48
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
2,122 by rmoretti
Thu, 2020-01-30 15:42
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,122 by rmoretti
Tue, 2014-11-04 08:53
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
2,124 by jharamesh
Sat, 2015-08-08 19:51
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
2,127 by lanselibai
Tue, 2014-11-11 04:42
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,128 by smlewis
Wed, 2017-02-15 07:43
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,140 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,142 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,146 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,147 by rmoretti
Wed, 2017-03-01 13:10
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,149 by ronj
Mon, 2014-04-21 06:47
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
2,155 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
2,160 by amorin
Sat, 2021-02-27 20:29
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,161 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,164 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,171 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
2,173 by lanselibai
Fri, 2014-10-17 03:36
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