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Rosetta 3 - Applications
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
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2,838 |
by rmoretti Mon, 2016-09-05 11:10 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
2,045 |
by Danielsebas Sun, 2019-09-01 02:38 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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4,350 |
by lanselibai Tue, 2014-09-30 02:28 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
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3,823 |
by mtyras Mon, 2015-06-08 03:18 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
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4,046 |
by aloshbau Mon, 2014-04-21 06:47 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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2,765 |
by attesor Mon, 2015-10-26 09:01 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
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1,541 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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nomenclature question in molfile_to_params_polymer.py in ncaa design by lei » Tue, 2023-11-21 09:47 |
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333 |
by lei Wed, 2023-11-22 06:23 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,770 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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3,529 |
by lanselibai Mon, 2014-10-13 10:10 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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3,850 |
by harshkhare Mon, 2014-04-21 06:47 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,976 |
by mxp Mon, 2019-09-23 01:40 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
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2,195 |
by benhardy Sun, 2020-09-20 11:15 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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3,092 |
by franfdez Mon, 2014-07-28 01:04 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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3,513 |
by attesor Mon, 2014-06-16 07:34 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
3,053 |
by mpacella Mon, 2014-04-21 06:47 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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2,353 |
by Corvin Wed, 2019-06-12 00:04 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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1,493 |
by yliang20 Tue, 2022-06-07 08:36 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
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2,789 |
by shrutikhare Fri, 2014-04-18 23:11 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
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3,761 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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3,733 |
by e3lm Tue, 2021-09-14 10:02 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
2,528 |
by Corvin Tue, 2019-08-27 00:46 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
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2,684 |
by aaj Wed, 2016-02-24 07:37 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
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1,882 |
by chenna Tue, 2021-10-12 20:51 |
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Number of Monte Carlo Cycles for FARFAR2 by mandar » Tue, 2024-03-12 19:11 |
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174 |
by mandar Tue, 2024-03-12 23:07 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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3,266 |
by jadolfbr Mon, 2014-04-21 06:47 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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2,092 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
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3,108 |
by Jane_002 Thu, 2023-08-03 19:47 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
2,357 |
by ozsolomon Thu, 2021-10-07 14:25 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
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3,268 |
by banshee Mon, 2016-09-12 23:41 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,676 |
by Martin Floor Mon, 2017-05-15 11:13 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
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3,303 |
by asbelx Mon, 2018-06-18 22:34 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
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1,867 |
by amorin Fri, 2021-02-12 08:53 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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5,185 |
by lanselibai Thu, 2014-11-20 02:15 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
1,441 |
by code_Monkey Thu, 2021-03-04 12:14 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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3,610 |
by alexn Mon, 2014-04-21 06:47 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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3,241 |
by chelsell Wed, 2014-10-08 12:25 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
2,019 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
2,760 |
by alonwenger Sat, 2021-12-18 12:32 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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3,548 |
by sumukh21 Mon, 2014-04-21 06:47 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
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3,354 |
by ast Mon, 2014-04-21 06:48 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,774 |
by felipet Thu, 2014-07-17 10:13 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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3,642 |
by jennifer Fri, 2015-03-27 05:56 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
3,154 |
by bogac Tue, 2017-03-07 02:11 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,850 |
by rmoretti Mon, 2014-04-21 06:47 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,478 |
by fred Tue, 2014-04-01 08:24 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,884 |
by jlawrie Wed, 2020-08-12 08:56 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
1,559 |
by chenna Mon, 2021-04-12 22:08 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
3,053 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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2,534 |
by msardejani Mon, 2016-12-12 17:48 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
2 |
706 |
by almeida85 Tue, 2023-05-23 08:23 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
2 |
4,613 |
by libai2098 Mon, 2014-04-21 06:47 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,878 |
by cam11 Wed, 2014-08-13 10:06 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,885 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
2 |
1,465 |
by chenna Wed, 2021-04-28 07:18 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,961 |
by sacch Mon, 2014-04-21 06:47 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,577 |
by Ashafix Mon, 2014-04-21 06:48 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
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3,555 |
by michael_luntan Mon, 2014-04-21 06:47 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,355 |
by ahonegger Fri, 2014-06-06 09:31 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
3,336 |
by cossio Fri, 2018-05-18 09:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,989 |
by orionshih Wed, 2019-06-26 03:54 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
2,015 |
by almeida85 Tue, 2020-09-01 01:29 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,960 |
by lanselibai Tue, 2014-11-11 04:42 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,762 |
by rmoretti Thu, 2015-09-17 12:47 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
2 |
557 |
by kameisel Wed, 2023-09-13 02:16 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,689 |
by loreseeker Mon, 2014-04-21 06:47 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,287 |
by ytao Mon, 2014-04-21 06:47 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,546 |
by aep Sat, 2016-08-13 13:03 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
3,087 |
by staciekim Thu, 2017-08-17 17:06 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,711 |
by esozdemir Thu, 2019-06-13 12:19 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
1,573 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
3,273 |
by rmoretti Sat, 2015-07-11 13:38 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
4,226 |
by rmoretti Wed, 2016-09-14 02:05 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
2,268 |
by Corvin Thu, 2019-10-10 01:12 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,787 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
3,290 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
2,083 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
3,079 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,734 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
2,344 |
by dyu Thu, 2017-09-28 18:54 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,865 |
by Danielsebas Tue, 2019-09-17 01:03 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
1,378 |
by browns02 Tue, 2021-06-29 11:41 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
3,119 |
by lchen Mon, 2014-04-21 06:47 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
2,486 |
by rmoretti Mon, 2017-03-13 08:01 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,888 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
2 |
1,981 |
by chenna Wed, 2020-03-04 03:24 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
4,479 |
by sacch Mon, 2014-04-21 06:47 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,948 |
by ronj Mon, 2014-04-21 06:47 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
2,059 |
by everyday847 Fri, 2019-03-29 13:13 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,802 |
by felipet Mon, 2014-04-21 06:47 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
2,255 |
by jlapin Wed, 2018-08-01 07:15 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,814 |
by eskici Mon, 2014-04-21 06:47 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,711 |
by jrcf Mon, 2016-02-15 17:59 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
1,761 |
by chrisHKL Wed, 2020-03-04 10:49 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
1,863 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
1,856 |
by hdelrisco Fri, 2019-10-18 17:16 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
1,816 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
1,664 |
by guowuchen Mon, 2022-03-07 23:34 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
3,453 |
by Wizard Sun, 2015-04-26 22:36 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
2 |
4,753 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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