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Rosetta 3 - Applications
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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2,981 |
by rlwoltz Mon, 2014-04-21 06:47 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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3,172 |
by krlitros87 Wed, 2014-10-22 09:31 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,600 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
2 |
2,432 |
by bp Thu, 2016-12-22 07:54 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
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1,883 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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rosetta_cm - ERROR: Assertion `tlen < slen` failed on File: src/core/fragment/util.cc:177 by ramon-arg » Thu, 2023-07-13 18:41 |
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167 |
by ramon-arg Fri, 2023-07-14 07:47 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
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2,529 |
by eyong123 Wed, 2015-04-22 11:33 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
2 |
2,225 |
by aep Fri, 2016-07-01 06:54 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
2,164 |
by dnamkr Thu, 2019-12-26 10:22 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
1,895 |
by lanselibai Tue, 2020-05-12 20:25 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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1,529 |
by tylerborrman Tue, 2021-02-09 16:33 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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2,897 |
by sn Thu, 2017-04-20 21:43 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
1,890 |
by Negarsardar Thu, 2019-05-30 23:46 |
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Successful RosettaCM? by jlawrie » Wed, 2020-08-19 06:53 |
2 |
1,538 |
by jlawrie Thu, 2020-08-20 11:00 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
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1,379 |
by code_Monkey Tue, 2021-04-27 12:11 |
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Is native.pdb necess for fragment_picker？ by ylwang » Thu, 2020-03-12 00:57 |
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1,652 |
by ylwang Thu, 2020-03-12 20:42 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
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830 |
by liuwenxi Fri, 2022-08-05 09:50 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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3,871 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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4,744 |
by zcrook Tue, 2014-11-25 10:27 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
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2,944 |
by cossio Tue, 2015-09-15 12:48 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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4,785 |
by lanselibai Wed, 2014-09-24 13:21 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
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3,442 |
by chelsell Wed, 2015-05-27 14:36 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,561 |
by rmoretti Mon, 2016-09-05 11:10 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
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1,752 |
by Danielsebas Sun, 2019-09-01 02:38 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
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5,086 |
by jingwei xu Wed, 2016-05-04 23:28 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
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3,804 |
by aloshbau Mon, 2014-04-21 06:47 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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2,536 |
by attesor Mon, 2015-10-26 09:01 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
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1,055 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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4,119 |
by lanselibai Tue, 2014-09-30 02:28 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,492 |
by mtyras Mon, 2015-06-08 03:18 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
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3,139 |
by mark.wilson Mon, 2014-04-21 06:47 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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2,856 |
by franfdez Mon, 2014-07-28 01:04 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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3,268 |
by attesor Mon, 2014-06-16 07:34 |
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Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
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2,052 |
by Corvin Wed, 2019-06-12 00:04 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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980 |
by yliang20 Tue, 2022-06-07 08:36 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
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3,159 |
by a_s_a Mon, 2014-04-21 06:47 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
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5,540 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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3,277 |
by lanselibai Mon, 2014-10-13 10:10 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,712 |
by mxp Mon, 2019-09-23 01:40 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
1,859 |
by benhardy Sun, 2020-09-20 11:15 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
3,204 |
by e3lm Tue, 2021-09-14 10:02 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,304 |
by deltag Mon, 2014-04-21 06:47 |
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A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
2,208 |
by Corvin Tue, 2019-08-27 00:46 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,802 |
by RMJ Mon, 2014-04-21 06:47 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,538 |
by shrutikhare Fri, 2014-04-18 23:11 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
1,829 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
2 |
2,679 |
by Jane_002 Thu, 2023-08-03 19:47 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
1,827 |
by ozsolomon Thu, 2021-10-07 14:25 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,427 |
by aaj Wed, 2016-02-24 07:37 |
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Strong bias in sampling observed in RosettaDock by chenna » Thu, 2020-08-27 22:23 |
2 |
1,596 |
by chenna Tue, 2021-10-12 20:51 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
2 |
2,428 |
by Martin Floor Mon, 2017-05-15 11:13 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
2,897 |
by asbelx Mon, 2018-06-18 22:34 |
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Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
1,554 |
by amorin Fri, 2021-02-12 08:53 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
4,948 |
by lanselibai Thu, 2014-11-20 02:15 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
2 |
1,176 |
by code_Monkey Thu, 2021-03-04 12:14 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
2,978 |
by banshee Mon, 2016-09-12 23:41 |
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does the loop kinetic support MPI now? by albumns » Fri, 2012-10-26 06:31 |
2 |
2,378 |
by smlewis Mon, 2014-04-21 06:47 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,127 |
by ast Mon, 2014-04-21 06:48 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,524 |
by felipet Thu, 2014-07-17 10:13 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,351 |
by jennifer Fri, 2015-03-27 05:56 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,414 |
by smlewis Mon, 2014-04-21 06:47 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,828 |
by bogac Tue, 2017-03-07 02:11 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
2,997 |
by chelsell Wed, 2014-10-08 12:25 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
1,676 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
2 |
2,040 |
by alonwenger Sat, 2021-12-18 12:32 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,660 |
by cam11 Wed, 2014-08-13 10:06 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,139 |
by fred Tue, 2014-04-01 08:24 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,576 |
by jlawrie Wed, 2020-08-12 08:56 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
1,235 |
by chenna Mon, 2021-04-12 22:08 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
2,803 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
2 |
2,282 |
by msardejani Mon, 2016-12-12 17:48 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
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254 |
by almeida85 Tue, 2023-05-23 08:23 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,352 |
by Ashafix Mon, 2014-04-21 06:48 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
2 |
4,243 |
by pdbb Mon, 2014-04-21 06:47 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
2 |
2,249 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
2 |
1,185 |
by chenna Wed, 2021-04-28 07:18 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
3,187 |
by yperez Mon, 2014-04-21 06:47 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,725 |
by lanselibai Tue, 2014-11-11 04:42 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,456 |
by rmoretti Thu, 2015-09-17 12:47 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
2 |
126 |
by kameisel Wed, 2023-09-13 02:16 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
2 |
4,073 |
by ytao Mon, 2014-04-21 06:47 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
2 |
2,308 |
by aep Sat, 2016-08-13 13:03 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
2,759 |
by staciekim Thu, 2017-08-17 17:06 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,391 |
by esozdemir Thu, 2019-06-13 12:19 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
2 |
1,288 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,054 |
by ahonegger Fri, 2014-06-06 09:31 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
2,926 |
by cossio Fri, 2018-05-18 09:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,707 |
by orionshih Wed, 2019-06-26 03:54 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
1,703 |
by almeida85 Tue, 2020-09-01 01:29 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,522 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,994 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
1,808 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,410 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
3,008 |
by rmoretti Sat, 2015-07-11 13:38 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
3,881 |
by rmoretti Wed, 2016-09-14 02:05 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
1,982 |
by Corvin Thu, 2019-10-10 01:12 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
3,043 |
by jadolfbr Mon, 2014-04-21 06:47 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
1,086 |
by browns02 Tue, 2021-06-29 11:41 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,370 |
by alexn Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,812 |
by ytao Mon, 2014-04-21 06:47 |
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