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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
3,040 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Element 'trRosettaProtocol': This element is not expected.
by csaylan » Tue, 2021-04-20 14:21
2
449 by csaylan
Tue, 2021-04-20 16:13
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
2,906 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
1,830 by smlewis
Fri, 2017-01-27 07:20
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
1,334 by mags33
Wed, 2019-11-06 09:35
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
2,729 by lanselibai
Mon, 2014-10-06 15:30
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
1,904 by ays
Tue, 2014-09-30 08:31
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
1,515 by rmoretti
Thu, 2018-09-20 09:19
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
804 by brspurri
Thu, 2020-05-14 12:24
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
1,510 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,192 by ronj
Mon, 2014-04-21 06:47
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,390 by dnamkr
Mon, 2019-12-30 11:43
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
3,135 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
674 by Astghik
Thu, 2020-12-03 02:35
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
2,551 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
1,547 by cossio
Sun, 2018-03-11 09:12
Normal topic Protein Ensemble RosettaLigand Docking
by sam_dc » Fri, 2021-03-26 10:18
2
523 by sam_dc
Fri, 2021-03-26 12:04
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
2,552 by krlitros87
Wed, 2014-10-22 09:31
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
2,037 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Altering substrate specificity
by bp » Thu, 2016-12-22 02:45
2
1,812 by bp
Thu, 2016-12-22 07:54
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,246 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
2,583 by a_s_a
Mon, 2014-04-21 06:47
Normal topic BUG REPORT: Remodel Resfile ERROR: LEU was added more than once?
by daniloboskovic » Wed, 2020-04-29 01:17
2
877 by daniloboskovic
Wed, 2020-04-29 05:51
Normal topic Docking-RMS value nan
by jlawrie » Wed, 2020-08-12 07:03
2
734 by jlawrie
Wed, 2020-08-12 07:27
Normal topic r_frag_quality
by ii_cnr » Mon, 2021-04-12 03:06
2
425 by ii_cnr
Mon, 2021-04-12 23:44
Normal topic Enzdes scorefile lost, can I recreate it
by eyong123 » Wed, 2015-04-15 05:55
2
1,938 by eyong123
Wed, 2015-04-22 11:33
Normal topic How to restart RASREC run
by aep » Fri, 2016-07-01 04:39
2
1,668 by aep
Fri, 2016-07-01 06:54
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
1,465 by dnamkr
Thu, 2019-12-26 10:22
Normal topic How to run partial_thread in RosettaCM when residure are more than 9999?
by lanselibai » Mon, 2020-05-11 22:43
2
1,055 by lanselibai
Tue, 2020-05-12 20:25
Normal topic hbond_sr_bb and hbond_lr_bb for different chains
by tylerborrman » Tue, 2020-10-13 13:41
2
721 by tylerborrman
Tue, 2021-02-09 16:33
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
2,051 by sn
Thu, 2017-04-20 21:43
Normal topic protein interface design
by Negarsardar » Tue, 2019-05-28 07:04
2
1,219 by Negarsardar
Thu, 2019-05-30 23:46
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
765 by jlawrie
Thu, 2020-08-20 11:00
Normal topic Filling the missing loops
by code_Monkey » Tue, 2021-04-27 07:44
2
395 by code_Monkey
Tue, 2021-04-27 12:11
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
3,855 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic Is native.pdb necess for fragment_picker?
by ylwang » Thu, 2020-03-12 00:57
2
985 by ylwang
Thu, 2020-03-12 20:42
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
3,973 by zcrook
Tue, 2014-11-25 10:27
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,301 by cossio
Tue, 2015-09-15 12:48
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
4,018 by lanselibai
Wed, 2014-09-24 13:21
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
2,743 by chelsell
Wed, 2015-05-27 14:36
Normal topic Trouble running Enzyme Design application
by danaitop » Thu, 2016-08-11 13:34
2
1,911 by rmoretti
Mon, 2016-09-05 11:10
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
1,065 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,104 by jarod
Mon, 2014-04-21 06:47
Normal topic Can I change high-resolution filter in SymDock
by attesor » Fri, 2015-10-23 07:35
2
1,929 by attesor
Mon, 2015-10-26 09:01
Normal topic Some wrong with the flag "-l" for score_jd2.linuxgccrelease
by lanselibai » Mon, 2014-09-29 02:29
2
3,557 by lanselibai
Tue, 2014-09-30 02:28
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,822 by mtyras
Mon, 2015-06-08 03:18
Normal topic antibody modeling error
by mxp » Mon, 2019-09-16 18:29
2
1,058 by mxp
Mon, 2019-09-23 01:40
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
1,100 by benhardy
Sun, 2020-09-20 11:15
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
2,267 by franfdez
Mon, 2014-07-28 01:04
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
1,922 by nawsad
Mon, 2014-04-21 06:47
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
2,555 by attesor
Mon, 2014-06-16 07:34
Normal topic Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal
by Corvin » Thu, 2019-04-25 01:20
2
1,288 by Corvin
Wed, 2019-06-12 00:04
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
2,730 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,381 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
4,886 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
2,641 by lanselibai
Mon, 2014-10-13 10:10
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,411 by lchen
Mon, 2014-04-21 06:47
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
1,900 by e3lm
Tue, 2021-09-14 10:02
Normal topic A problem with "make_fragments.pl" script dependencies
by Corvin » Fri, 2019-08-16 04:30
2
1,391 by Corvin
Tue, 2019-08-27 00:46
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
1,969 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
1,867 by rmoretti
Tue, 2017-04-25 06:41
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
1,354 by happycaapi
Tue, 2021-06-29 15:35
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,118 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
1,573 by smlewis
Fri, 2018-09-14 10:34
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
3,579 by rmoretti
Tue, 2014-06-17 08:51
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
3,784 by smlewis
Fri, 2014-03-07 14:09
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,209 by smlewis
Mon, 2014-04-21 06:47
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,103 by beowulfey
Tue, 2015-06-23 16:10
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
781 by zdaw
Tue, 2020-12-15 15:38
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
1,580 by smlewis
Wed, 2018-12-12 16:51
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
1,195 by YuFei
Sat, 2020-05-30 00:12
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
3,049 by smlewis
Mon, 2014-04-21 06:47
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
1,972 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,135 by rmoretti
Wed, 2015-09-02 12:33
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,237 by rmoretti
Thu, 2017-02-02 09:02
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
2,405 by bjharris
Sun, 2020-08-23 14:03
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,092 by rmoretti
Tue, 2016-07-12 09:30
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
3,001 by rmoretti
Mon, 2014-05-12 15:16
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,132 by rmoretti
Fri, 2016-06-17 10:36
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,182 by smlewis
Wed, 2017-02-15 07:43
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
2,668 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
1,047 by ctqwong
Mon, 2020-07-27 01:48
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,431 by brspurri
Sat, 2017-08-26 07:08
Normal topic What is a rational minimal value for the "-nstruct" option
by Sunyp_IM » Fri, 2020-05-22 01:28
3
1,075 by nannemdp
Sun, 2020-05-24 14:46
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
2,846 by rmoretti
Tue, 2016-07-12 09:41
Normal topic issues about cstfile in RosettaMatch
by Nicole Deng » Fri, 2020-12-18 05:44
3
974 by He Xiao
Sun, 2021-04-11 19:29
Normal topic What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"?
by lanselibai » Fri, 2014-10-17 06:06
3
20,045 by rmoretti
Fri, 2014-10-17 10:17
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
2,694 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
1,775 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
3,048 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,055 by smlewis
Mon, 2017-01-23 06:26
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
4,530 by weitzner
Mon, 2014-04-21 06:47
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
2,740 by cn
Mon, 2014-04-21 06:47
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
3,755 by rmoretti
Wed, 2014-07-02 16:55
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
608 by vizcarra
Thu, 2021-08-26 10:16
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,864 by rmoretti
Tue, 2017-08-22 09:03
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,128 by smlewis
Thu, 2020-05-21 21:05
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
3,981 by jianqing
Mon, 2014-04-21 06:47
Normal topic cluster.mpi.linuxgccrelease failed
by fred » Mon, 2014-02-24 12:11
3
6,972 by fred
Thu, 2014-03-27 11:29
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,185 by sn
Mon, 2017-03-06 10:03
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