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Rosetta 3 - Applications

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Normal topic Error with Formatdb of legacy blast when running "install_dependencies.pl"?
by Danielsebas » Mon, 2019-09-16 09:30
2
1,081 by Danielsebas
Tue, 2019-09-17 01:03
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
2,595 by exchhattu
Mon, 2014-04-21 06:47
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,357 by agulsevin
Mon, 2014-04-21 06:48
Normal topic setup_RosettaCM.py
by browns02 » Mon, 2021-06-28 07:13
2
535 by browns02
Tue, 2021-06-29 11:41
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
1,785 by rmoretti
Mon, 2017-03-13 08:01
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
1,324 by everyday847
Fri, 2019-03-29 13:13
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
2,680 by sacch
Mon, 2014-04-21 06:47
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,112 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
1,481 by jlapin
Wed, 2018-08-01 07:15
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
3,209 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic Imitating induced fit protocol in SymDock2 without any symmetry constraints
by chenna » Fri, 2020-02-14 01:35
2
1,190 by chenna
Wed, 2020-03-04 03:24
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
2,993 by maxebert
Mon, 2014-04-21 06:47
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
2,004 by jrcf
Mon, 2016-02-15 17:59
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
1,039 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,119 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
1,052 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic small ligand docking in Ubuntu 20.04, please help
by guowuchen » Sun, 2022-03-06 18:12
2
303 by guowuchen
Mon, 2022-03-07 23:34
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
2,678 by Wizard
Sun, 2015-04-26 22:36
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
2,075 by rmoretti
Fri, 2016-04-29 08:26
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,261 by brspurri
Mon, 2017-05-15 11:48
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
1,112 by vmulligan
Tue, 2020-03-17 11:35
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,587 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
2,744 by fred
Mon, 2014-04-21 06:48
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
3,349 by jrcf
Mon, 2015-10-05 21:32
Normal topic antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages
by AlfredoKCL » Sun, 2021-02-28 16:42
2
692 by AlfredoKCL
Mon, 2021-03-01 04:07
Normal topic Ways to improve AbRelax performance?
by Corvin » Tue, 2022-04-19 06:10
2
179 by Corvin
Thu, 2022-04-21 00:50
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,186 by cossio
Fri, 2018-10-12 04:43
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
1,286 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic How to make new VALL database?
by Danielsebas » Sun, 2019-09-08 02:16
2
1,700 by Danielsebas
Wed, 2019-09-11 00:44
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,269 by sushreet
Tue, 2014-08-26 13:02
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,485 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,355 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
816 by sam_dc
Mon, 2021-04-12 07:24
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
2,646 by rmoretti
Mon, 2014-10-06 16:00
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
2,971 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
1,775 by ashu4487
Sun, 2016-12-11 19:03
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
565 by rmoretti
Fri, 2021-07-09 15:05
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
2,631 by MajorID
Mon, 2014-04-21 06:47
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
2
2,961 by cossio
Tue, 2015-01-20 06:40
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,359 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,247 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,423 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
874 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,507 by smlewis
Mon, 2014-04-21 06:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,544 by lchen
Mon, 2014-04-21 06:47
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,289 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
1,005 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,372 by aloshbau
Mon, 2014-04-21 06:47
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,372 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
1,351 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
693 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,650 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,127 by bjharris
Thu, 2020-07-02 11:09
Normal topic How do I change the default Compiler for Rosetta?
by pagumaaaaa » Wed, 2022-03-16 00:23
2
250 by pagumaaaaa
Thu, 2022-03-24 22:40
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,139 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
1,026 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
3,310 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
3,149 by Pernille
Thu, 2014-07-03 07:21
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,321 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
3,222 by eskici
Mon, 2014-04-21 06:47
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
2,702 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
1,897 by swarekwood
Fri, 2017-08-25 05:08
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,128 by Ruska322
Fri, 2019-09-06 07:13
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
994 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,381 by Pernille
Wed, 2014-10-08 10:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,449 by mintseris
Wed, 2015-06-24 22:04
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
2
513 by dnamkr
Fri, 2022-04-22 17:00
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
1,715 by smlewis
Fri, 2017-06-16 07:35
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
2,718 by a_s_a
Mon, 2014-04-21 06:47
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,501 by attesor
Tue, 2015-11-17 07:36
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,187 by David Weis
Mon, 2017-03-13 06:40
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,186 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,175 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
1,009 by jlawrie
Wed, 2020-08-12 08:57
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
2,816 by ahonegger
Mon, 2014-05-12 09:08
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
1,177 by vmulligan
Thu, 2019-06-13 14:59
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
3,589 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
1,539 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
2,734 by ast
Mon, 2014-04-21 06:48
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
1,012 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
2,094 by mdidonato
Wed, 2014-06-04 14:55
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
986 by almeida85
Wed, 2020-09-02 06:14
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
2,807 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
3,114 by jrcf
Mon, 2015-09-21 11:10
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
4,050 by lkrathn
Mon, 2014-04-21 06:48
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
2,082 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
1,044 by cm21
Wed, 2020-05-20 11:22
Normal topic The energy terms in InterfaceAnalyzer
by Sunyp_IM » Tue, 2021-11-02 18:43
2
411 by zivben
Sat, 2021-11-13 04:49
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
4,036 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
4,234 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,940 by weehee
Mon, 2014-04-21 06:47
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
3,150 by rmoretti
Tue, 2015-11-10 11:35
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,088 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,011 by rmoretti
Thu, 2015-04-16 10:38
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,334 by smlewis
Mon, 2014-04-21 06:47
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,292 by rmoretti
Mon, 2014-05-12 08:45
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
2,891 by cn
Mon, 2014-04-21 06:47
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
2,979 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,412 by rmoretti
Wed, 2017-03-01 13:10
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