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Rosetta 3 - Applications
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
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1,582 |
by chenna Wed, 2020-03-04 03:24 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
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3,289 |
by smlewis Mon, 2014-04-21 06:47 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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1,676 |
by everyday847 Fri, 2019-03-29 13:13 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
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3,408 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
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1,847 |
by jlapin Wed, 2018-08-01 07:15 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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2,347 |
by jrcf Mon, 2016-02-15 17:59 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
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1,375 |
by chrisHKL Wed, 2020-03-04 10:49 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
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883 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
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1,482 |
by hdelrisco Fri, 2019-10-18 17:16 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
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1,418 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
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1,024 |
by guowuchen Mon, 2022-03-07 23:34 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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3,038 |
by Wizard Sun, 2015-04-26 22:36 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,023 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
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2,880 |
by cossio Fri, 2018-10-12 04:43 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
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1,678 |
by Danielsebas Sun, 2019-09-08 02:08 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
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2,338 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
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2,415 |
by rmoretti Fri, 2016-04-29 08:26 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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2,653 |
by brspurri Mon, 2017-05-15 11:48 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,511 |
by vmulligan Tue, 2020-03-17 11:35 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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2,879 |
by rlwoltz Mon, 2014-04-21 06:47 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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3,079 |
by fred Mon, 2014-04-21 06:48 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,766 |
by jrcf Mon, 2015-10-05 21:32 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,047 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
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984 |
by Corvin Thu, 2022-04-21 00:50 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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3,000 |
by rmoretti Mon, 2014-10-06 16:00 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
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2,129 |
by Danielsebas Wed, 2019-09-11 00:44 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,583 |
by sushreet Tue, 2014-08-26 13:02 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,830 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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2,712 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
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1,892 |
by sam_dc Mon, 2021-04-12 07:24 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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3,724 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,649 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
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1,842 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,226 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,336 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,105 |
by ashu4487 Sun, 2016-12-11 19:03 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
986 |
by rmoretti Fri, 2021-07-09 15:05 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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2,935 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
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3,699 |
by aloshbau Mon, 2014-04-21 06:47 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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3,256 |
by alexn Mon, 2014-04-21 06:47 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,633 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
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1,382 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
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2,807 |
by smlewis Mon, 2014-04-21 06:47 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,699 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
2 |
1,880 |
by chrisHKL Thu, 2020-03-05 09:11 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,118 |
by code_Monkey Thu, 2021-05-06 07:14 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
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3,489 |
by rmoretti Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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2,978 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
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1,513 |
by bjharris Thu, 2020-07-02 11:09 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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993 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,449 |
by kalabharath Wed, 2015-04-29 16:21 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,376 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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3,152 |
by sumukh21 Mon, 2014-04-21 06:47 |
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-loops:fa_input not found in command line top-level context by swarekwood » Thu, 2017-08-24 03:15 |
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2,261 |
by swarekwood Fri, 2017-08-25 05:08 |
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ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
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1,462 |
by Ruska322 Fri, 2019-09-06 07:13 |
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ligand_docking ligand preparation by Alison_Yajie » Thu, 2020-05-21 10:21 |
2 |
1,320 |
by Alison_Yajie Wed, 2020-06-24 12:38 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
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4,251 |
by libai2098 Mon, 2014-04-21 06:47 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
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2,828 |
by lchen Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,518 |
by Pernille Thu, 2014-07-03 07:21 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,670 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,724 |
by Pernille Wed, 2014-10-08 10:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
2,798 |
by mintseris Wed, 2015-06-24 22:04 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
1,379 |
by dnamkr Fri, 2022-04-22 17:00 |
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error extracting PDB from silent from AbinitioRelax with constraints by attesor » Wed, 2017-06-14 04:15 |
2 |
2,045 |
by smlewis Fri, 2017-06-16 07:35 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
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2,635 |
by sacch Mon, 2014-04-21 06:47 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,869 |
by attesor Tue, 2015-11-17 07:36 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,555 |
by David Weis Mon, 2017-03-13 06:40 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,610 |
by Martin Floor Tue, 2020-01-21 11:15 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,527 |
by rmoretti Fri, 2015-01-02 09:43 |
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Docking-I_sc values do not correlate by jlawrie » Wed, 2020-08-12 08:08 |
2 |
1,390 |
by jlawrie Wed, 2020-08-12 08:57 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
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3,352 |
by loreseeker Mon, 2014-04-21 06:47 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,232 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,529 |
by eskici Mon, 2014-04-21 06:47 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
1 |
3,076 |
by jadolfbr Mon, 2014-04-21 06:47 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
779 |
by vmulligan Wed, 2021-04-28 12:59 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,220 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,515 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
1,473 |
by kamau Wed, 2017-12-13 14:31 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
2,105 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
1 |
1,126 |
by everyday847 Fri, 2019-08-23 04:08 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
1 |
2,238 |
by smlewis Mon, 2014-04-21 06:47 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
1 |
1,455 |
by jeliazkov Mon, 2019-06-17 06:03 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
1 |
1,231 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,458 |
by Payne Tue, 2022-06-21 07:25 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
1 |
2,070 |
by rmoretti Mon, 2015-05-25 12:30 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,720 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
2,031 |
by rmoretti Sat, 2015-06-20 20:07 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
1,965 |
by rmoretti Fri, 2016-10-14 08:56 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
1,550 |
by rmoretti Wed, 2018-11-21 15:31 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
1 |
2,072 |
by smlewis Mon, 2014-07-07 11:58 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
1 |
2,005 |
by rmoretti Fri, 2016-06-17 10:15 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
1,308 |
by rmoretti Mon, 2019-08-26 12:49 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
1 |
1,886 |
by rmoretti Wed, 2014-11-26 07:51 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
1 |
1,987 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
1,330 |
by rmoretti Wed, 2019-07-10 10:10 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
1,743 |
by lanselibai Fri, 2019-12-27 09:38 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
1 |
829 |
by smlewis Wed, 2021-03-24 14:59 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
1 |
749 |
by rmoretti Tue, 2022-05-17 07:29 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
1,795 |
by rmoretti Fri, 2015-01-02 11:06 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
1,509 |
by benhardy Wed, 2020-09-30 04:24 |
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