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Rosetta 3 - Applications
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
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2,761 |
by alonwenger Sat, 2021-12-18 12:32 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
3,356 |
by ast Mon, 2014-04-21 06:48 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,777 |
by felipet Thu, 2014-07-17 10:13 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,646 |
by jennifer Fri, 2015-03-27 05:56 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
3,159 |
by bogac Tue, 2017-03-07 02:11 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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3,056 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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2,537 |
by msardejani Mon, 2016-12-12 17:48 |
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CC (or similar) calculation for cryoEM fitting by almeida85 » Tue, 2023-05-16 01:32 |
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708 |
by almeida85 Tue, 2023-05-23 08:23 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,878 |
by cam11 Wed, 2014-08-13 10:06 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
5,480 |
by fred Tue, 2014-04-01 08:24 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
2 |
1,884 |
by jlawrie Wed, 2020-08-12 08:56 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
2 |
1,559 |
by chenna Mon, 2021-04-12 22:08 |
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Trouble running MPI docking protocol, please help! by Rob_Barringer » Tue, 2020-08-18 06:40 |
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2,885 |
by Rob_Barringer Fri, 2020-09-25 05:45 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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1,465 |
by chenna Wed, 2021-04-28 07:18 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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3,851 |
by harshkhare Mon, 2014-04-21 06:47 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
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3,577 |
by Ashafix Mon, 2014-04-21 06:48 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
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4,479 |
by sacch Mon, 2014-04-21 06:47 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
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3,802 |
by felipet Mon, 2014-04-21 06:47 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
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3,060 |
by mpacella Mon, 2014-04-21 06:47 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
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3,762 |
by m_grisewood Mon, 2014-04-21 06:47 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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3,357 |
by ahonegger Fri, 2014-06-06 09:31 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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3,340 |
by cossio Fri, 2018-05-18 09:51 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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1,993 |
by orionshih Wed, 2019-06-26 03:54 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
2,015 |
by almeida85 Tue, 2020-09-01 01:29 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,963 |
by lanselibai Tue, 2014-11-11 04:42 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
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3,765 |
by rmoretti Thu, 2015-09-17 12:47 |
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ValueError("Path %s does not exist!" % path_name) for rna_helix.py by kameisel » Wed, 2023-08-16 00:39 |
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560 |
by kameisel Wed, 2023-09-13 02:16 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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4,288 |
by ytao Mon, 2014-04-21 06:47 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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2,549 |
by aep Sat, 2016-08-13 13:03 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
3,090 |
by staciekim Thu, 2017-08-17 17:06 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
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2,714 |
by esozdemir Thu, 2019-06-13 12:19 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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1,574 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
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2,790 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
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3,294 |
by ashu4487 Mon, 2018-07-16 19:24 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
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2,087 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,737 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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3,278 |
by rmoretti Sat, 2015-07-11 13:38 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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4,226 |
by rmoretti Wed, 2016-09-14 02:05 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
2,268 |
by Corvin Thu, 2019-10-10 01:12 |
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problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
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2,347 |
by dyu Thu, 2017-09-28 18:54 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,869 |
by Danielsebas Tue, 2019-09-17 01:03 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
1,379 |
by browns02 Tue, 2021-06-29 11:41 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
2,490 |
by rmoretti Mon, 2017-03-13 08:01 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,951 |
by ronj Mon, 2014-04-21 06:47 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
2,060 |
by everyday847 Fri, 2019-03-29 13:13 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
2,258 |
by jlapin Wed, 2018-08-01 07:15 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
2 |
4,860 |
by frichter Mon, 2014-04-21 06:47 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,888 |
by jadolfbr Mon, 2014-05-12 10:41 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
2 |
1,981 |
by chenna Wed, 2020-03-04 03:24 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,715 |
by jrcf Mon, 2016-02-15 17:59 |
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nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
1,761 |
by chrisHKL Wed, 2020-03-04 10:49 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
1,867 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
1,857 |
by hdelrisco Fri, 2019-10-18 17:16 |
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"core.kinematics.FoldTree" error upon running RAbD by Sunyp_IM » Fri, 2020-06-26 17:27 |
2 |
1,816 |
by Sunyp_IM Fri, 2020-06-26 20:57 |
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small ligand docking in Ubuntu 20.04, please help by guowuchen » Sun, 2022-03-06 18:12 |
2 |
1,664 |
by guowuchen Mon, 2022-03-07 23:34 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
3,456 |
by Wizard Sun, 2015-04-26 22:36 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
2 |
4,757 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
5,503 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,754 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,791 |
by rmoretti Fri, 2016-04-29 08:26 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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3,067 |
by brspurri Mon, 2017-05-15 11:48 |
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Any progress on getting intermediate structures during a design? by broomsday » Mon, 2020-03-16 06:46 |
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1,925 |
by vmulligan Tue, 2020-03-17 11:35 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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3,404 |
by fred Mon, 2014-04-21 06:48 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
4,166 |
by jrcf Mon, 2015-10-05 21:32 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,469 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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Ways to improve AbRelax performance? by Corvin » Tue, 2022-04-19 06:10 |
2 |
2,922 |
by Corvin Thu, 2022-04-21 00:50 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
3,677 |
by cossio Fri, 2018-10-12 04:43 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
2 |
2,076 |
by Danielsebas Sun, 2019-09-08 02:08 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
2 |
3,061 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
2 |
2,562 |
by Danielsebas Wed, 2019-09-11 00:44 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
3,280 |
by exchhattu Mon, 2014-04-21 06:47 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,949 |
by sushreet Tue, 2014-08-26 13:02 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
3,174 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
3,064 |
by hzhekova Tue, 2018-01-16 10:31 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
2,409 |
by sam_dc Mon, 2021-04-12 07:24 |
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clustering by ays » Tue, 2014-09-30 08:26 |
2 |
3,365 |
by rmoretti Mon, 2014-10-06 16:00 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,659 |
by maxebert Mon, 2014-04-21 06:47 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,674 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
2 |
2,457 |
by ashu4487 Sun, 2016-12-11 19:03 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
3,349 |
by sacch Mon, 2014-04-21 06:47 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
1,415 |
by rmoretti Fri, 2021-07-09 15:05 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
3,083 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
4,114 |
by jtmacd Fri, 2015-12-04 03:11 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
3,094 |
by rmoretti Tue, 2017-03-28 08:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
2,286 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
2 |
1,587 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
2 |
1,376 |
by jxw Wed, 2023-10-11 10:04 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,985 |
by jarod Mon, 2014-04-21 06:47 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
3,028 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Fri, 2020-06-19 08:58 |
2 |
1,761 |
by Kotimedidhi Mon, 2020-06-22 16:19 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
3,123 |
by lchen Mon, 2014-04-21 06:47 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
1 |
2,286 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
1 |
1,560 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
1 |
1,841 |
by danpf Sun, 2020-08-30 22:23 |
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Error in score funtion "hack_elec 0.42" by intomybioverse » Sun, 2024-03-17 06:33 |
1 |
125 |
by rmoretti Mon, 2024-03-18 08:55 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
2,156 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
1 |
1,982 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
1 |
1,130 |
by CameronJA Tue, 2021-06-15 20:02 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,688 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
1 |
2,542 |
by rmoretti Mon, 2016-09-05 11:29 |
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