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Rosetta 3 - Applications

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Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,792 by jarod
Mon, 2014-04-21 06:47
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
2,517 by nawsad
Mon, 2014-04-21 06:47
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
3,145 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,754 by bjharris
Thu, 2020-07-02 11:09
Normal topic How do I change the default Compiler for Rosetta?
by pagumaaaaa » Wed, 2022-03-16 00:23
2
1,324 by pagumaaaaa
Thu, 2022-03-24 22:40
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,629 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
1,580 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
3,960 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,895 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
2,164 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
1,386 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
3,737 by Pernille
Thu, 2014-07-03 07:21
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,870 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
3,210 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
2,461 by swarekwood
Fri, 2017-08-25 05:08
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,644 by Ruska322
Fri, 2019-09-06 07:13
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
1,507 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
2
1,814 by dnamkr
Fri, 2022-04-22 17:00
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
3,206 by tfliu
Mon, 2014-04-21 06:48
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
2,235 by smlewis
Fri, 2017-06-16 07:35
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
3,235 by a_s_a
Mon, 2014-04-21 06:47
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
3,077 by attesor
Tue, 2015-11-17 07:36
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,750 by David Weis
Mon, 2017-03-13 06:40
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,845 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,910 by Pernille
Wed, 2014-10-08 10:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,986 by mintseris
Wed, 2015-06-24 22:04
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,879 by RMJ
Mon, 2014-04-21 06:47
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,722 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
1,606 by jlawrie
Wed, 2020-08-12 08:57
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
3,362 by deltag
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
4,306 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
2,105 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
1,797 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
3,349 by ahonegger
Mon, 2014-05-12 09:08
Normal topic AddHelixSequenceConstraints Mover
by Negarsardar » Thu, 2019-05-30 03:17
2
1,697 by vmulligan
Thu, 2019-06-13 14:59
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
1,515 by almeida85
Wed, 2020-09-02 06:14
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
3,360 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
3,926 by jrcf
Mon, 2015-09-21 11:10
Normal topic Dock cyclic peptide with non-canonical amino acids to protein target using rosetta flexpepdock?
by lei » Mon, 2023-09-11 23:34
2
264 by lei
Wed, 2023-09-13 19:35
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
4,547 by lkrathn
Mon, 2014-04-21 06:48
Normal topic does the loop kinetic support MPI now?
by albumns » Fri, 2012-10-26 06:31
2
2,438 by smlewis
Mon, 2014-04-21 06:47
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
3,103 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
1,634 by cm21
Wed, 2020-05-20 11:22
Normal topic The energy terms in InterfaceAnalyzer
by Sunyp_IM » Tue, 2021-11-02 18:43
2
1,277 by zivben
Sat, 2021-11-13 04:49
Normal topic Problems with fixbb in Rosetta 3.5
by mdidonato » Wed, 2014-06-04 13:56
2
2,575 by mdidonato
Wed, 2014-06-04 14:55
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
3,499 by smlewis
Mon, 2014-04-21 06:47
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
3,630 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
3,251 by brspurri
Thu, 2017-06-01 10:58
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
3,741 by mumdonar
Mon, 2014-04-21 06:48
Normal topic where is generate_ligens.linuxgccrelease?
by Nicole Deng » Thu, 2020-12-03 00:00
2
1,559 by Nicole Deng
Fri, 2020-12-18 00:28
Normal topic D-amino acids tripeptide docking.
by sam_dc » Sat, 2021-07-03 08:48
2
1,321 by vmulligan
Tue, 2021-07-06 08:27
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
3,151 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
3,623 by rosend
Tue, 2015-11-17 12:12
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
3,066 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Error when trying docking protocol with different ligand
by scyphs » Wed, 2020-08-05 04:37
2
1,428 by scyphs
Mon, 2020-08-10 08:09
Normal topic Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations
by yliang20 » Wed, 2022-06-15 11:26
2
1,258 by yliang20
Wed, 2022-06-15 13:46
Normal topic protein-ligand docking rescoring with interfaceAnalyzer
by syntekabio2019 » Sat, 2020-12-19 03:59
2
1,298 by syntekabio2019
Sun, 2020-12-20 21:10
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
2,777 by jharamesh
Sat, 2015-08-08 19:51
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
3,232 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
2,152 by tsztain
Mon, 2019-02-18 09:55
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
2,066 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic homology modeling- Error: length mismatch between sequence and alignment.
by pdbb » Mon, 2012-10-01 07:57
2
4,316 by pdbb
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
3,242 by yperez
Mon, 2014-04-21 06:47
Normal topic Element 'trRosettaProtocol': This element is not expected.
by csaylan » Tue, 2021-04-20 14:21
2
1,315 by csaylan
Tue, 2021-04-20 16:13
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
2,817 by smlewis
Fri, 2017-01-27 07:20
Normal topic Alanine Scanning for 1 Protein (no interface)
by mags33 » Fri, 2019-10-25 10:08
2
2,213 by mags33
Wed, 2019-11-06 09:35
Normal topic Rosetta Design: Non-canonical amino acid substrate not accepted
by Friedrich Ehinger » Fri, 2023-08-04 00:09
2
315 by Friedrich Ehinger
Fri, 2023-08-04 08:38
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
3,428 by lanselibai
Mon, 2014-10-06 15:30
Normal topic flexpepdock_score_only
by ays » Sun, 2014-09-21 06:17
2
2,552 by ays
Tue, 2014-09-30 08:31
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
2,290 by rmoretti
Thu, 2018-09-20 09:19
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
1,520 by brspurri
Thu, 2020-05-14 12:24
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,903 by agulsevin
Mon, 2014-04-21 06:48
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,583 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Error in a new docking
by jrcf » Wed, 2017-05-17 19:26
2
4,230 by tingting
Tue, 2022-03-15 23:55
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
2,282 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
2,107 by dnamkr
Mon, 2019-12-30 11:43
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
3,106 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
1,457 by Astghik
Thu, 2020-12-03 02:35
Normal topic ligand_docking
by yang » Thu, 2023-02-16 04:37
2
2,141 by yang
Wed, 2023-02-22 19:18
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
3,451 by alexn
Mon, 2014-04-21 06:47
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,871 by ytao
Mon, 2014-04-21 06:47
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
2,395 by cossio
Sun, 2018-03-11 09:12
Normal topic Protein Ensemble RosettaLigand Docking
by sam_dc » Fri, 2021-03-26 10:18
2
1,375 by sam_dc
Fri, 2021-03-26 12:04
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,520 by rmoretti
Fri, 2018-08-03 07:54
Normal topic I need some help for using pHDock applications(histidine protonation / pH-dependent binding)
by leygkn » Tue, 2020-09-22 18:40
1
1,149 by leygkn
Tue, 2020-09-22 22:46
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
2,578 by rmoretti
Fri, 2014-08-15 08:06
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
2,183 by rmoretti
Tue, 2015-11-24 16:16
Normal topic SnugDock Partners parameter
by tyang39 » Fri, 2022-07-08 10:02
1
854 by rmoretti
Fri, 2022-07-08 10:27
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
3,020 by smlewis
Mon, 2014-04-21 06:47
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,676 by rmoretti
Sun, 2019-08-25 19:15
Normal topic denovo modelling on a virus-coat protein dimer
by aseem121 » Wed, 2019-10-16 06:55
1
1,353 by danpf
Wed, 2019-10-16 13:03
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
1,975 by rmoretti
Mon, 2017-07-03 09:17
Normal topic antibody - sequence position requested was 0
by jremmel » Mon, 2021-09-27 12:26
1
1,106 by nannemdp
Mon, 2021-09-27 14:22
Normal topic unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file
by Sajjad » Wed, 2022-11-30 11:40
1
3,896 by FJOM
Wed, 2023-05-03 07:21
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
3,273 by rmoretti
Mon, 2014-05-12 08:25
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
3,057 by lanselibai
Wed, 2015-01-21 02:40
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,506 by rmoretti
Tue, 2018-04-10 15:29
Normal topic residue_energy_breakdown of a protein-ligand complex.
by sam_dc » Tue, 2021-05-18 04:45
1
1,094 by rmoretti
Tue, 2021-05-18 07:21
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,663 by smlewis
Thu, 2017-02-09 21:50
Normal topic FixedBB design output no beta strands
by tkoh » Fri, 2023-08-25 01:02
1
233 by rmoretti
Tue, 2023-08-29 20:13
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