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Rosetta 3 - Applications

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Normal topic Imitating induced fit protocol in SymDock2 without any symmetry constraints
by chenna » Fri, 2020-02-14 01:35
2
1,582 by chenna
Wed, 2020-03-04 03:24
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
3,289 by smlewis
Mon, 2014-04-21 06:47
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
1,676 by everyday847
Fri, 2019-03-29 13:13
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,408 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
1,847 by jlapin
Wed, 2018-08-01 07:15
Normal topic Space Swap!!!
by jrcf » Sun, 2016-02-14 11:43
2
2,347 by jrcf
Mon, 2016-02-15 17:59
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
1,375 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic RIFdocking:Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/
by sia » Tue, 2022-08-02 20:06
2
883 by SeongRyeong Go
Mon, 2022-08-15 18:31
Normal topic change number of output pose files written out (default=50) in ligand docking XML script
by hdelrisco » Fri, 2019-10-18 13:50
2
1,482 by hdelrisco
Fri, 2019-10-18 17:16
Normal topic "core.kinematics.FoldTree" error upon running RAbD
by Sunyp_IM » Fri, 2020-06-26 17:27
2
1,418 by Sunyp_IM
Fri, 2020-06-26 20:57
Normal topic small ligand docking in Ubuntu 20.04, please help
by guowuchen » Sun, 2022-03-06 18:12
2
1,024 by guowuchen
Mon, 2022-03-07 23:34
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
3,038 by Wizard
Sun, 2015-04-26 22:36
Normal topic ReplicaDock 2.0 Native vs Input Structure Flags Confusion
by katherinemccoy » Tue, 2022-12-27 06:42
2
4,023 by katherinemccoy
Tue, 2023-02-28 18:19
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,880 by cossio
Fri, 2018-10-12 04:43
Normal topic "make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7"
by Danielsebas » Mon, 2019-09-02 08:14
2
1,678 by Danielsebas
Sun, 2019-09-08 02:08
Normal topic St13runtime_error in Rosetta ligand docking
by syntekabio2019 » Thu, 2023-02-09 18:18
2
2,338 by syntekabio2019
Sun, 2023-02-19 18:39
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
2,415 by rmoretti
Fri, 2016-04-29 08:26
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,653 by brspurri
Mon, 2017-05-15 11:48
Normal topic Any progress on getting intermediate structures during a design?
by broomsday » Mon, 2020-03-16 06:46
2
1,511 by vmulligan
Tue, 2020-03-17 11:35
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,879 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
3,079 by fred
Mon, 2014-04-21 06:48
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
3,766 by jrcf
Mon, 2015-10-05 21:32
Normal topic antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages
by AlfredoKCL » Sun, 2021-02-28 16:42
2
1,047 by AlfredoKCL
Mon, 2021-03-01 04:07
Normal topic Ways to improve AbRelax performance?
by Corvin » Tue, 2022-04-19 06:10
2
984 by Corvin
Thu, 2022-04-21 00:50
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
3,000 by rmoretti
Mon, 2014-10-06 16:00
Normal topic How to make new VALL database?
by Danielsebas » Sun, 2019-09-08 02:16
2
2,129 by Danielsebas
Wed, 2019-09-11 00:44
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,583 by sushreet
Tue, 2014-08-26 13:02
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,830 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,712 by hzhekova
Tue, 2018-01-16 10:31
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
1,892 by sam_dc
Mon, 2021-04-12 07:24
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,724 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,649 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Choosing weight file for interface design?
by johnnytam100 » Tue, 2019-05-07 00:47
2
1,842 by johnnytam100
Tue, 2019-05-21 22:33
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
1,226 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
3,336 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
2,105 by ashu4487
Sun, 2016-12-11 19:03
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
986 by rmoretti
Fri, 2021-07-09 15:05
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
2,935 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,699 by aloshbau
Mon, 2014-04-21 06:47
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
3,256 by alexn
Mon, 2014-04-21 06:47
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,633 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Fri, 2020-06-19 08:58
2
1,382 by Kotimedidhi
Mon, 2020-06-22 16:19
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,807 by smlewis
Mon, 2014-04-21 06:47
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,699 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
1,880 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
1,118 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
3,489 by rmoretti
Mon, 2014-04-21 06:47
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,978 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,513 by bjharris
Thu, 2020-07-02 11:09
Normal topic How do I change the default Compiler for Rosetta?
by pagumaaaaa » Wed, 2022-03-16 00:23
2
993 by pagumaaaaa
Thu, 2022-03-24 22:40
Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,449 by kalabharath
Wed, 2015-04-29 16:21
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
1,376 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
3,152 by sumukh21
Mon, 2014-04-21 06:47
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
2,261 by swarekwood
Fri, 2017-08-25 05:08
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,462 by Ruska322
Fri, 2019-09-06 07:13
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
1,320 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
4,251 by libai2098
Mon, 2014-04-21 06:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,828 by lchen
Mon, 2014-04-21 06:47
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
3,518 by Pernille
Thu, 2014-07-03 07:21
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,670 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,724 by Pernille
Wed, 2014-10-08 10:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,798 by mintseris
Wed, 2015-06-24 22:04
Normal topic How to Perform point mutations with NCAA
by Subhrodeep Saha » Tue, 2021-06-22 02:05
2
1,379 by dnamkr
Fri, 2022-04-22 17:00
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
2,045 by smlewis
Fri, 2017-06-16 07:35
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,635 by sacch
Mon, 2014-04-21 06:47
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,869 by attesor
Tue, 2015-11-17 07:36
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,555 by David Weis
Mon, 2017-03-13 06:40
Normal topic Centroid mode minimization
by Martin Floor » Tue, 2020-01-21 07:34
2
1,610 by Martin Floor
Tue, 2020-01-21 11:15
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,527 by rmoretti
Fri, 2015-01-02 09:43
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
1,390 by jlawrie
Wed, 2020-08-12 08:57
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
3,352 by loreseeker
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
3,232 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
3,529 by eskici
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
3,076 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
779 by vmulligan
Wed, 2021-04-28 12:59
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
3,220 by rmoretti
Mon, 2014-04-21 06:48
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
2,515 by rmoretti
Tue, 2014-11-04 10:33
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,473 by kamau
Wed, 2017-12-13 14:31
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
2,105 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
1,126 by everyday847
Fri, 2019-08-23 04:08
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
2,238 by smlewis
Mon, 2014-04-21 06:47
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
1,455 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
1,231 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
1
2,458 by Payne
Tue, 2022-06-21 07:25
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
2,070 by rmoretti
Mon, 2015-05-25 12:30
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
2,720 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
2,031 by rmoretti
Sat, 2015-06-20 20:07
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,965 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,550 by rmoretti
Wed, 2018-11-21 15:31
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
2,072 by smlewis
Mon, 2014-07-07 11:58
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
2,005 by rmoretti
Fri, 2016-06-17 10:15
Normal topic "Angle constraint: 0-length bonds" error
by purvi24 » Sun, 2019-07-28 10:09
1
1,308 by rmoretti
Mon, 2019-08-26 12:49
Normal topic Instructing design scripts to use noncanonical AA instead of canonical
by zcrook » Tue, 2014-11-25 10:43
1
1,886 by rmoretti
Wed, 2014-11-26 07:51
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
1,987 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
1,330 by rmoretti
Wed, 2019-07-10 10:10
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
1,743 by lanselibai
Fri, 2019-12-27 09:38
Normal topic Should I be stripping water molecules from my input structure for Rosetta Design?
by chrisHKL » Wed, 2021-03-24 14:22
1
829 by smlewis
Wed, 2021-03-24 14:59
Normal topic Disulfidize- "Extra content at the end of the document"
by ldlamini » Tue, 2022-05-17 02:37
1
749 by rmoretti
Tue, 2022-05-17 07:29
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,795 by rmoretti
Fri, 2015-01-02 11:06
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,509 by benhardy
Wed, 2020-09-30 04:24
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