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Rosetta 3 - Applications
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,002 |
by aaj Fri, 2016-02-26 08:40 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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1,575 |
by rmoretti Wed, 2016-02-24 14:39 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
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1,818 |
by aaj Wed, 2016-02-24 07:37 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
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1,835 |
by jrcf Mon, 2016-02-15 17:59 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
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2,487 |
by jrcf Fri, 2016-02-12 16:42 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
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5,340 |
by Marius1987 Fri, 2016-02-05 07:20 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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3,366 |
by Derek Smith Wed, 2016-02-03 05:47 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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2,312 |
by rmoretti Tue, 2016-01-05 08:35 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
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4,311 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,102 |
by achambe Mon, 2016-01-04 11:26 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
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1,439 |
by rmoretti Tue, 2015-12-15 09:48 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
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6,167 |
by eyong123 Wed, 2015-12-09 07:17 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
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3,154 |
by jtmacd Fri, 2015-12-04 03:11 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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1,625 |
by rmoretti Tue, 2015-11-24 16:16 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
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1,747 |
by rmoretti Tue, 2015-11-24 16:07 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
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5,684 |
by rmoretti Tue, 2015-11-24 15:30 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
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2,884 |
by rosend Tue, 2015-11-17 12:12 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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2,284 |
by attesor Tue, 2015-11-17 07:36 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
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2,946 |
by rmoretti Tue, 2015-11-10 11:35 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
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1,380 |
by rmoretti Tue, 2015-11-10 11:10 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
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4,907 |
by syoifczeri Sat, 2015-11-07 21:42 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
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1,645 |
by rmoretti Sat, 2015-10-31 08:57 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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1,925 |
by attesor Mon, 2015-10-26 09:01 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
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1,356 |
by smlewis Thu, 2015-10-22 08:04 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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6,124 |
by attesor Wed, 2015-10-21 13:53 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
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2,895 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
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5,262 |
by rmoretti Mon, 2015-10-12 15:10 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,124 |
by jrcf Mon, 2015-10-05 21:32 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,674 |
by rmoretti Fri, 2015-10-02 12:30 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
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12,970 |
by rmoretti Mon, 2015-09-28 15:00 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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3,913 |
by tylerborrman Mon, 2015-09-28 09:30 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
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2,034 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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2,916 |
by jrcf Mon, 2015-09-21 11:10 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
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2,594 |
by rmoretti Thu, 2015-09-17 12:47 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
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2,298 |
by cossio Tue, 2015-09-15 12:48 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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10,284 |
by rmoretti Fri, 2015-09-11 13:27 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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1,771 |
by jadolfbr Wed, 2015-09-09 12:35 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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3,792 |
by rmoretti Wed, 2015-09-09 12:08 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,500 |
by rmoretti Wed, 2015-09-09 12:01 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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2,284 |
by rmoretti Fri, 2015-09-04 10:25 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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3,294 |
by jadolfbr Thu, 2015-09-03 16:18 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
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5,980 |
by rmoretti Wed, 2015-09-02 12:43 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
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3,125 |
by rmoretti Wed, 2015-09-02 12:33 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,119 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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1,562 |
by sgourn Tue, 2015-08-18 18:25 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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5,143 |
by rmoretti Tue, 2015-08-18 16:47 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,504 |
by bernhardcl Tue, 2015-08-11 09:11 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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2,161 |
by jharamesh Sat, 2015-08-08 19:51 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,495 |
by rmoretti Thu, 2015-08-06 08:57 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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1,873 |
by rmoretti Tue, 2015-07-14 14:59 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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2,425 |
by rmoretti Sat, 2015-07-11 13:38 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
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1,595 |
by rmoretti Fri, 2015-07-03 14:41 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
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5,457 |
by eyong123 Mon, 2015-06-29 04:44 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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2,249 |
by mintseris Wed, 2015-06-24 22:04 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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3,099 |
by beowulfey Tue, 2015-06-23 16:10 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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1,647 |
by rmoretti Sat, 2015-06-20 20:07 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
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2,916 |
by rmoretti Fri, 2015-06-19 13:53 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
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6,433 |
by protos_heis Mon, 2015-06-08 07:00 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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1,435 |
by smlewis Mon, 2015-06-08 06:35 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
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2,818 |
by mtyras Mon, 2015-06-08 03:18 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
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2,736 |
by chelsell Wed, 2015-05-27 14:36 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
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1,556 |
by rmoretti Mon, 2015-05-25 12:37 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,683 |
by rmoretti Mon, 2015-05-25 12:30 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,421 |
by rmoretti Mon, 2015-05-25 11:49 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,061 |
by rmoretti Mon, 2015-05-25 11:30 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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4,052 |
by rmoretti Thu, 2015-04-30 16:46 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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1,995 |
by kalabharath Wed, 2015-04-29 16:21 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,258 |
by shaunmk Mon, 2015-04-27 02:33 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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2,502 |
by Wizard Sun, 2015-04-26 22:36 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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4,625 |
by rmoretti Fri, 2015-04-24 12:02 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
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1,937 |
by eyong123 Wed, 2015-04-22 11:33 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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2,890 |
by dswhit Tue, 2015-04-21 10:14 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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5,259 |
by rmoretti Thu, 2015-04-16 11:23 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
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2,807 |
by rmoretti Thu, 2015-04-16 10:38 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,227 |
by jennifer Wed, 2015-04-08 05:29 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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5,077 |
by jadolfbr Tue, 2015-04-07 10:50 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
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5,697 |
by rmoretti Tue, 2015-03-31 08:56 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
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3,364 |
by rmoretti Tue, 2015-03-31 08:20 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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2,596 |
by jennifer Fri, 2015-03-27 05:56 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
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1,922 |
by rmoretti Wed, 2015-03-25 12:39 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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2,135 |
by rmoretti Wed, 2015-03-25 11:33 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,204 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,321 |
by syoifczeri Tue, 2015-03-10 23:08 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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4,834 |
by lanselibai Sun, 2015-03-01 15:00 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,149 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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2,966 |
by lanselibai Tue, 2015-02-24 02:36 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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4,343 |
by felipet Wed, 2015-02-11 05:13 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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1,718 |
by rmoretti Mon, 2015-02-09 12:33 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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3,754 |
by rmoretti Mon, 2015-02-09 12:04 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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1,803 |
by lanselibai Thu, 2015-01-29 00:50 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
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15,680 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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3,802 |
by attesor Tue, 2015-01-27 02:20 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,152 |
by rmoretti Mon, 2015-01-26 12:15 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,441 |
by lanselibai Wed, 2015-01-21 02:40 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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2,788 |
by cossio Tue, 2015-01-20 06:40 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,326 |
by cossio Mon, 2015-01-19 07:14 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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3,599 |
by cossio Mon, 2015-01-19 07:10 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,016 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,108 |
by lanselibai Sat, 2015-01-17 07:57 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
2,687 |
by lanselibai Tue, 2015-01-13 14:25 |
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