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Rosetta 3 - Applications
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,377 |
by rmoretti Mon, 2017-03-06 12:39 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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2,761 |
by sn Mon, 2017-03-06 10:03 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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3,071 |
by jhm13c Thu, 2017-03-02 12:01 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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2,708 |
by rmoretti Wed, 2017-03-01 13:10 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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1,942 |
by smlewis Tue, 2017-02-21 14:10 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
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1,695 |
by smlewis Tue, 2017-02-21 07:58 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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3,954 |
by rmoretti Mon, 2017-02-20 08:09 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,383 |
by alex Sun, 2017-02-19 08:12 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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2,440 |
by cdbahl Sat, 2017-02-18 13:02 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
2,711 |
by smlewis Wed, 2017-02-15 07:43 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,438 |
by smlewis Thu, 2017-02-09 21:50 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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1,916 |
by smlewis Mon, 2017-02-06 20:46 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,584 |
by smlewis Mon, 2017-02-06 06:57 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,672 |
by rmoretti Thu, 2017-02-02 09:02 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
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2,384 |
by smlewis Fri, 2017-01-27 07:20 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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4,944 |
by rmoretti Mon, 2017-01-23 08:52 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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2,488 |
by smlewis Mon, 2017-01-23 06:26 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
5 |
3,588 |
by smlewis Fri, 2017-01-20 08:14 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,094 |
by rmoretti Thu, 2017-01-19 09:11 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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1,494 |
by mwfranklin Mon, 2017-01-16 12:30 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,023 |
by rmoretti Wed, 2017-01-11 13:00 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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6,403 |
by rmoretti Wed, 2017-01-11 12:53 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,109 |
by ac.research Mon, 2017-01-09 00:59 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,534 |
by smlewis Fri, 2016-12-23 07:04 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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2,212 |
by bp Thu, 2016-12-22 07:54 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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2,073 |
by msardejani Mon, 2016-12-12 17:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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1,991 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,604 |
by smlewis Thu, 2016-12-08 15:50 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,013 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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1,963 |
by rmoretti Wed, 2016-11-30 07:46 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
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7,952 |
by cossio Mon, 2016-11-21 07:56 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,557 |
by smlewis Fri, 2016-11-11 08:33 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
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1,877 |
by rmoretti Fri, 2016-10-14 08:56 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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1,986 |
by rmoretti Fri, 2016-10-14 08:42 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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5,211 |
by msardejani Sat, 2016-10-01 12:55 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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3,475 |
by rmoretti Wed, 2016-09-14 02:05 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
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2,685 |
by banshee Mon, 2016-09-12 23:41 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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4,545 |
by ks Mon, 2016-09-12 03:14 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,803 |
by rmoretti Fri, 2016-09-09 07:47 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,115 |
by rmoretti Mon, 2016-09-05 11:29 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
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2,319 |
by rmoretti Mon, 2016-09-05 11:10 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
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4,041 |
by rmoretti Mon, 2016-09-05 10:59 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
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9,317 |
by smlewis Wed, 2016-08-17 07:56 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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2,112 |
by aep Sat, 2016-08-13 13:03 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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2,070 |
by gsuchunli Mon, 2016-07-25 13:56 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
1,905 |
by mwfranklin Mon, 2016-07-25 11:49 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,317 |
by rmoretti Tue, 2016-07-12 09:41 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
4,337 |
by rmoretti Tue, 2016-07-12 09:35 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,589 |
by rmoretti Tue, 2016-07-12 09:30 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
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3,129 |
by rmoretti Tue, 2016-07-12 09:05 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
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1,767 |
by rmoretti Tue, 2016-07-12 08:56 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
2 |
2,004 |
by aep Fri, 2016-07-01 06:54 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
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11,266 |
by starone Fri, 2016-06-24 18:29 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
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1,839 |
by rmoretti Thu, 2016-06-23 10:55 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
6,629 |
by linucks Mon, 2016-06-20 12:02 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,679 |
by rmoretti Fri, 2016-06-17 10:36 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
1,690 |
by rmoretti Fri, 2016-06-17 10:24 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
10,591 |
by rmoretti Fri, 2016-06-17 10:22 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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1,919 |
by rmoretti Fri, 2016-06-17 10:15 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,492 |
by Sandy Tue, 2016-05-31 18:48 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
4,557 |
by jingwei xu Wed, 2016-05-04 23:28 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,302 |
by jingwei xu Wed, 2016-05-04 23:26 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,305 |
by smlewis Mon, 2016-05-02 08:20 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
2,819 |
by rmoretti Fri, 2016-04-29 09:21 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
10,753 |
by rmoretti Fri, 2016-04-29 08:57 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,302 |
by rmoretti Fri, 2016-04-29 08:26 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
13,949 |
by rmoretti Thu, 2016-04-28 16:43 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,639 |
by Derek Wed, 2016-04-27 01:31 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,341 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
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1,816 |
by rmoretti Fri, 2016-04-08 07:39 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,629 |
by kbuhr Mon, 2016-03-28 01:08 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,403 |
by Marius1987 Mon, 2016-03-14 04:34 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,073 |
by dee2711453 Fri, 2016-03-11 21:32 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
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1,593 |
by smlewis Wed, 2016-03-09 04:11 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
1,195 |
by aaj Fri, 2016-02-26 08:40 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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1,855 |
by rmoretti Wed, 2016-02-24 14:39 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,208 |
by aaj Wed, 2016-02-24 07:37 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,232 |
by jrcf Mon, 2016-02-15 17:59 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
2,939 |
by jrcf Fri, 2016-02-12 16:42 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
6 |
6,276 |
by Marius1987 Fri, 2016-02-05 07:20 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
3,911 |
by Derek Smith Wed, 2016-02-03 05:47 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
2,701 |
by rmoretti Tue, 2016-01-05 08:35 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
5,014 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
0 |
1,296 |
by achambe Mon, 2016-01-04 11:26 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
1,734 |
by rmoretti Tue, 2015-12-15 09:48 |
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Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
7 |
7,153 |
by eyong123 Wed, 2015-12-09 07:17 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,605 |
by jtmacd Fri, 2015-12-04 03:11 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
1 |
1,908 |
by rmoretti Tue, 2015-11-24 16:16 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
1 |
2,043 |
by rmoretti Tue, 2015-11-24 16:07 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
6,506 |
by rmoretti Tue, 2015-11-24 15:30 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,305 |
by rosend Tue, 2015-11-17 12:12 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,751 |
by attesor Tue, 2015-11-17 07:36 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,424 |
by rmoretti Tue, 2015-11-10 11:35 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,645 |
by rmoretti Tue, 2015-11-10 11:10 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
6 |
5,629 |
by syoifczeri Sat, 2015-11-07 21:42 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
1,956 |
by rmoretti Sat, 2015-10-31 08:57 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,317 |
by attesor Mon, 2015-10-26 09:01 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
1 |
1,643 |
by smlewis Thu, 2015-10-22 08:04 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
5 |
6,941 |
by attesor Wed, 2015-10-21 13:53 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
3,497 |
by rmoretti Mon, 2015-10-12 15:20 |
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