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Rosetta 3 - Applications
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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2,653 |
by brspurri Mon, 2017-05-15 11:48 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,312 |
by Martin Floor Mon, 2017-05-15 11:13 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
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1,701 |
by rmoretti Mon, 2017-05-15 08:54 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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1,803 |
by rmoretti Thu, 2017-04-27 07:10 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
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2,458 |
by rmoretti Tue, 2017-04-25 06:41 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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1,715 |
by rmoretti Fri, 2017-04-21 07:41 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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2,730 |
by sn Thu, 2017-04-20 21:43 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
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3,115 |
by rmoretti Thu, 2017-04-20 13:59 |
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Camelid antibody (VHH) modelling by Ayoub Ksouri » Tue, 2017-04-04 22:52 |
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9,228 |
by Ayoub Ksouri Wed, 2017-04-19 15:16 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
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1,844 |
by rmoretti Sat, 2017-04-15 13:30 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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3,422 |
by MJG Tue, 2017-04-04 23:59 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,650 |
by rmoretti Tue, 2017-03-28 08:51 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,612 |
by rmoretti Fri, 2017-03-24 13:39 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
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3,287 |
by brspurri Fri, 2017-03-24 11:35 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
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3,847 |
by attesor Thu, 2017-03-16 01:21 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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4,129 |
by David Weis Mon, 2017-03-13 10:59 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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2,114 |
by rmoretti Mon, 2017-03-13 08:01 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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2,555 |
by David Weis Mon, 2017-03-13 06:40 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
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2,660 |
by bogac Tue, 2017-03-07 02:11 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,464 |
by rmoretti Mon, 2017-03-06 12:39 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
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2,940 |
by sn Mon, 2017-03-06 10:03 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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3,252 |
by jhm13c Thu, 2017-03-02 12:01 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
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2,845 |
by rmoretti Wed, 2017-03-01 13:10 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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2,026 |
by smlewis Tue, 2017-02-21 14:10 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
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1,820 |
by smlewis Tue, 2017-02-21 07:58 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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4,167 |
by rmoretti Mon, 2017-02-20 08:09 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,446 |
by alex Sun, 2017-02-19 08:12 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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2,540 |
by cdbahl Sat, 2017-02-18 13:02 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
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2,850 |
by smlewis Wed, 2017-02-15 07:43 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,521 |
by smlewis Thu, 2017-02-09 21:50 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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2,003 |
by smlewis Mon, 2017-02-06 20:46 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,664 |
by smlewis Mon, 2017-02-06 06:57 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,807 |
by rmoretti Thu, 2017-02-02 09:02 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
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2,524 |
by smlewis Fri, 2017-01-27 07:20 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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5,145 |
by rmoretti Mon, 2017-01-23 08:52 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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2,613 |
by smlewis Mon, 2017-01-23 06:26 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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3,771 |
by smlewis Fri, 2017-01-20 08:14 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,262 |
by rmoretti Thu, 2017-01-19 09:11 |
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Domain insertion with Non-CAA by mwfranklin » Mon, 2017-01-16 12:30 |
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1,552 |
by mwfranklin Mon, 2017-01-16 12:30 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,129 |
by rmoretti Wed, 2017-01-11 13:00 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
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6,628 |
by rmoretti Wed, 2017-01-11 12:53 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,154 |
by ac.research Mon, 2017-01-09 00:59 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,613 |
by smlewis Fri, 2016-12-23 07:04 |
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Altering substrate specificity by bp » Thu, 2016-12-22 02:45 |
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2,323 |
by bp Thu, 2016-12-22 07:54 |
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How to scan double mutations in RosettaScripts? by msardejani » Mon, 2016-12-12 16:52 |
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2,176 |
by msardejani Mon, 2016-12-12 17:48 |
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Including ab-initio predicted model in fragment library generation by ashu4487 » Thu, 2016-12-08 17:49 |
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2,105 |
by ashu4487 Sun, 2016-12-11 19:03 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,683 |
by smlewis Thu, 2016-12-08 15:50 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,079 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
1 |
2,054 |
by rmoretti Wed, 2016-11-30 07:46 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
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8,311 |
by cossio Mon, 2016-11-21 07:56 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,637 |
by smlewis Fri, 2016-11-11 08:33 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
1,965 |
by rmoretti Fri, 2016-10-14 08:56 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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2,077 |
by rmoretti Fri, 2016-10-14 08:42 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
6 |
5,428 |
by msardejani Sat, 2016-10-01 12:55 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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3,683 |
by rmoretti Wed, 2016-09-14 02:05 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
2,841 |
by banshee Mon, 2016-09-12 23:41 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
5 |
4,728 |
by ks Mon, 2016-09-12 03:14 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,887 |
by rmoretti Fri, 2016-09-09 07:47 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,233 |
by rmoretti Mon, 2016-09-05 11:29 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,433 |
by rmoretti Mon, 2016-09-05 11:10 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
4,232 |
by rmoretti Mon, 2016-09-05 10:59 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
12 |
9,692 |
by smlewis Wed, 2016-08-17 07:56 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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2,204 |
by aep Sat, 2016-08-13 13:03 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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2,152 |
by gsuchunli Mon, 2016-07-25 13:56 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
1,971 |
by mwfranklin Mon, 2016-07-25 11:49 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,456 |
by rmoretti Tue, 2016-07-12 09:41 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
4,592 |
by rmoretti Tue, 2016-07-12 09:35 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,737 |
by rmoretti Tue, 2016-07-12 09:30 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,259 |
by rmoretti Tue, 2016-07-12 09:05 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
1,850 |
by rmoretti Tue, 2016-07-12 08:56 |
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How to restart RASREC run by aep » Fri, 2016-07-01 04:39 |
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2,118 |
by aep Fri, 2016-07-01 06:54 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
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11,880 |
by starone Fri, 2016-06-24 18:29 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
1 |
1,917 |
by rmoretti Thu, 2016-06-23 10:55 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
6,845 |
by linucks Mon, 2016-06-20 12:02 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,822 |
by rmoretti Fri, 2016-06-17 10:36 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
1,778 |
by rmoretti Fri, 2016-06-17 10:24 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
10,947 |
by rmoretti Fri, 2016-06-17 10:22 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
1 |
2,005 |
by rmoretti Fri, 2016-06-17 10:15 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,555 |
by Sandy Tue, 2016-05-31 18:48 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
4,818 |
by jingwei xu Wed, 2016-05-04 23:28 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,411 |
by jingwei xu Wed, 2016-05-04 23:26 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,449 |
by smlewis Mon, 2016-05-02 08:20 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
2,931 |
by rmoretti Fri, 2016-04-29 09:21 |
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Ab-initio peptide-protein docking by suhail » Sun, 2013-06-23 16:20 |
9 |
11,054 |
by rmoretti Fri, 2016-04-29 08:57 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,415 |
by rmoretti Fri, 2016-04-29 08:26 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
15,323 |
by rmoretti Thu, 2016-04-28 16:43 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
1 |
1,723 |
by Derek Wed, 2016-04-27 01:31 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,396 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
1,918 |
by rmoretti Fri, 2016-04-08 07:39 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,773 |
by kbuhr Mon, 2016-03-28 01:08 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,521 |
by Marius1987 Mon, 2016-03-14 04:34 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,212 |
by dee2711453 Fri, 2016-03-11 21:32 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,677 |
by smlewis Wed, 2016-03-09 04:11 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
1,253 |
by aaj Fri, 2016-02-26 08:40 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
1 |
1,939 |
by rmoretti Wed, 2016-02-24 14:39 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,315 |
by aaj Wed, 2016-02-24 07:37 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,347 |
by jrcf Mon, 2016-02-15 17:59 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,070 |
by jrcf Fri, 2016-02-12 16:42 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
6 |
6,478 |
by Marius1987 Fri, 2016-02-05 07:20 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
4,067 |
by Derek Smith Wed, 2016-02-03 05:47 |
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