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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
1,383 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
1,960 by rmoretti
Sat, 2015-06-20 20:07
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
4,733 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
3,846 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
7,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
2,789 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,785 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
1,993 by rmoretti
Mon, 2015-05-25 12:30
Normal topic LoopModeler mover unable to determine cut point
by gszwabowski » Mon, 2020-06-01 13:12
1
1,151 by matteoferla
Thu, 2020-07-02 07:27
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
11,938 by lanselibai
Fri, 2014-11-07 02:06
Normal topic Macrocycle from a C-terminal amidated peptide
by almeida85 » Thu, 2022-08-18 07:53
0
347 by almeida85
Thu, 2022-08-18 07:53
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
4,980 by Corvin
Tue, 2019-10-15 01:12
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
4,610 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,412 by smlewis
Mon, 2014-04-21 06:48
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
1,431 by almeida85
Tue, 2020-09-01 01:29
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
4,379 by smlewis
Mon, 2014-04-21 06:47
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
1
947 by brspurri
Wed, 2021-01-20 08:11
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
5,449 by siciliu
Thu, 2014-04-10 09:50
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
3,238 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
3,876 by ytao
Mon, 2014-04-21 06:47
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
2,024 by fglaser
Mon, 2014-04-21 06:47
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
1,205 by rmoretti
Mon, 2019-06-24 14:39
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,431 by benhardy
Wed, 2020-09-30 04:24
Normal topic Membrane Abinitio modeling error
by jkyan007 » Thu, 2020-10-29 03:30
1
842 by noahC_noahDo
Tue, 2020-11-17 10:35
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
2,765 by chelsell
Wed, 2014-10-08 12:25
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
2,234 by smlewis
Mon, 2014-04-21 06:48
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
1,733 by jlapin
Wed, 2018-08-01 07:15
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,639 by ytao
Mon, 2014-04-21 06:47
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
13,497 by smlewis
Mon, 2014-04-21 06:47
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
633 by tschiex
Wed, 2020-07-08 05:28
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
511 by inorgchem
Tue, 2020-06-16 20:45
Normal topic minimize_ppi.mpi.linuxgccrelease doesn't use jd2?
by e3lm » Tue, 2022-05-17 11:58
0
393 by e3lm
Tue, 2022-05-17 11:58
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
1,345 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
3,153 by alexn
Mon, 2014-04-21 06:47
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
2,027 by lanselibai
Thu, 2015-01-29 00:50
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
4,567 by fred
Mon, 2014-04-21 06:48
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
9,180 by lanselibai
Wed, 2014-10-01 02:13
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,456 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
2,757 by e3lm
Tue, 2021-09-14 10:02
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
4,613 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,415 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,644 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
2,121 by smlewis
Wed, 2018-12-12 16:51
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,615 by rmoretti
Mon, 2017-05-15 08:54
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
2,168 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
4,063 by rmoretti
Mon, 2016-09-05 10:59
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,902 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
3,133 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,598 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,568 by nkemjika
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
7,547 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
1,894 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
800 by jlawrie
Wed, 2020-08-12 08:47
Normal topic Modelling at defined pH - for pmutscan - pH:mode not working
by cagfa1 » Tue, 2022-03-15 04:05
1
581 by Rituparna_Saman...
Wed, 2022-03-23 11:21
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
564 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic Modelling of multi-component symmetrical structures
by LanMei » Wed, 2020-10-07 09:58
0
708 by LanMei
Wed, 2020-10-07 09:58
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
1,280 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,957 by brspurri
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
3,919 by tsztain
Tue, 2018-12-11 13:41
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
2,158 by rmoretti
Tue, 2015-07-14 14:59
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
6,725 by jarod
Mon, 2014-04-21 06:47
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,577 by rmoretti
Thu, 2017-08-03 09:29
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
2,176 by ssrb
Fri, 2020-08-14 09:18
Normal topic mp_transform optimize with franklin2019 scoring
by benhardy » Thu, 2020-05-28 08:35
0
871 by benhardy
Thu, 2020-05-28 08:45
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
3,091 by jhm13c
Thu, 2017-03-02 12:01
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
0
539 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
3,417 by eskici
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
4,738 by yogeshkd
Mon, 2014-04-21 06:47
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
52,807 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
0
854 by elaine.thai
Wed, 2020-05-13 18:07
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
4,359 by smlewis
Thu, 2018-06-14 10:26
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
3,249 by tong
Sun, 2018-06-24 23:30
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
1,720 by rmoretti
Wed, 2019-07-10 09:22
Normal topic Nanobody design
by chandana » Tue, 2022-08-09 20:36
0
361 by chandana
Tue, 2022-08-09 20:36
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
1,148 by matteoferla
Sat, 2021-06-19 03:07
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
783 by marinok
Mon, 2020-09-28 14:11
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
5,551 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
2,300 by smlewis
Mon, 2018-10-15 08:42
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
7,971 by helenah
Thu, 2020-10-08 05:29
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
759 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
2,318 by rmoretti
Tue, 2017-04-25 06:41
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,519 by jarod
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
10,616 by rmoretti
Fri, 2016-06-17 10:22
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,696 by rmoretti
Fri, 2016-06-17 10:24
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,952 by jrcf
Fri, 2016-02-12 16:42
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
8
5,961 by e3lm
Thu, 2022-05-26 12:51
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
3,365 by jrcf
Mon, 2015-09-21 11:10
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
1,304 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
1,281 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,669 by fred
Mon, 2014-04-21 06:47
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
1,288 by amorin
Fri, 2021-02-12 08:53
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,366 by smlewis
Mon, 2014-04-21 06:47
Normal topic Old Knotfind algorithm
by Martin Floor » Thu, 2022-09-22 07:28
1
467 by rmoretti
Fri, 2022-09-23 09:38
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
1,410 by bjharris
Thu, 2020-07-02 11:09
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
2,110 by danpf
Fri, 2020-02-21 18:32
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,565 by rmoretti
Thu, 2014-03-13 08:04
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
8,009 by ast
Thu, 2014-03-13 07:17
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,286 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
2,013 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
5,028 by rmoretti
Mon, 2014-04-21 06:47
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