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Rosetta 3 - Applications
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
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2,635 |
by sacch Mon, 2014-04-21 06:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
6 |
5,122 |
by Loki01 Thu, 2018-02-15 13:54 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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587 |
by sam_dc Sat, 2021-10-09 05:38 |
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Local docking- should I use KIC? by seayoung lee » Fri, 2022-05-27 02:45 |
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563 |
by seayoung lee Fri, 2022-05-27 02:45 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
3,724 |
by dfcoelho Tue, 2018-10-16 09:05 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,315 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,456 |
by rmoretti Tue, 2016-07-12 09:41 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
6 |
4,075 |
by smlewis Wed, 2018-08-08 15:48 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
5,306 |
by lzx32 Mon, 2014-04-21 06:47 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,483 |
by rmoretti Mon, 2015-05-25 11:30 |
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Loop modeling with constraints by agctomer » Sat, 2021-03-20 03:53 |
3 |
1,425 |
by agctomer Thu, 2021-04-08 07:37 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,464 |
by rmoretti Mon, 2017-03-06 12:39 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
2,031 |
by rmoretti Sat, 2015-06-20 20:07 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
4,866 |
by wsgosal Mon, 2014-04-21 06:48 |
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Loop prediction by yzhou » Thu, 2013-07-18 14:24 |
3 |
3,964 |
by jadolfbr Mon, 2014-04-21 06:48 |
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loop re-modeling std::out_of_range by rlwoltz » Tue, 2013-03-12 18:11 |
9 |
8,035 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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2,870 |
by smlewis Mon, 2014-04-21 06:47 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
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3,883 |
by rmoretti Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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2,070 |
by rmoretti Mon, 2015-05-25 12:30 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,242 |
by matteoferla Thu, 2020-07-02 07:27 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
14 |
12,381 |
by lanselibai Fri, 2014-11-07 02:06 |
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Lots of Prepacking Jobs for Snugdock Failing by katherinemccoy » Tue, 2023-02-28 18:17 |
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2,010 |
by katherinemccoy Mon, 2023-03-13 19:10 |
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Macrocycle from a C-terminal amidated peptide by almeida85 » Thu, 2022-08-18 07:53 |
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538 |
by almeida85 Thu, 2022-08-18 07:53 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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5,300 |
by Corvin Tue, 2019-10-15 01:12 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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4,739 |
by smlewis Mon, 2014-04-21 06:47 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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2,479 |
by smlewis Mon, 2014-04-21 06:48 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
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1,564 |
by almeida85 Tue, 2020-09-01 01:29 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
4 |
4,534 |
by smlewis Mon, 2014-04-21 06:47 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,025 |
by brspurri Wed, 2021-01-20 08:11 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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5,642 |
by siciliu Thu, 2014-04-10 09:50 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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3,336 |
by JadAbbass Mon, 2014-04-21 06:48 |
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membrane ab initio modeling application with constraints by ytao » Thu, 2012-11-08 11:56 |
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3,962 |
by ytao Mon, 2014-04-21 06:47 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
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2,089 |
by fglaser Mon, 2014-04-21 06:47 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,283 |
by rmoretti Mon, 2019-06-24 14:39 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,509 |
by benhardy Wed, 2020-09-30 04:24 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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917 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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2,876 |
by chelsell Wed, 2014-10-08 12:25 |
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membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
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2,301 |
by smlewis Mon, 2014-04-21 06:48 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
1,848 |
by jlapin Wed, 2018-08-01 07:15 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
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2,720 |
by ytao Mon, 2014-04-21 06:47 |
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membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
13,875 |
by smlewis Mon, 2014-04-21 06:47 |
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Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
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685 |
by tschiex Wed, 2020-07-08 05:28 |
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metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
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555 |
by inorgchem Tue, 2020-06-16 20:45 |
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minimize_ppi.mpi.linuxgccrelease doesn't use jd2? by e3lm » Tue, 2022-05-17 11:58 |
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593 |
by e3lm Tue, 2022-05-17 11:58 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
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1,484 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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3,256 |
by alexn Mon, 2014-04-21 06:47 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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2,080 |
by lanselibai Thu, 2015-01-29 00:50 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
4,717 |
by fred Mon, 2014-04-21 06:48 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
6 |
9,484 |
by lanselibai Wed, 2014-10-01 02:13 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
1,568 |
by rmoretti Fri, 2019-04-26 12:13 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
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2,984 |
by e3lm Tue, 2021-09-14 10:02 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
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76 |
by rmoretti Fri, 2023-05-05 13:44 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
4,735 |
by smlewis Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,521 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
1,753 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,300 |
by smlewis Wed, 2018-12-12 16:51 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,701 |
by rmoretti Mon, 2017-05-15 08:54 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
1 |
2,238 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
4,232 |
by rmoretti Mon, 2016-09-05 10:59 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
2,988 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
3,223 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
2,712 |
by hzhekova Tue, 2018-01-16 10:31 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,683 |
by nkemjika Mon, 2014-04-21 06:47 |
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modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
7,805 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
1 |
1,987 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
876 |
by jlawrie Wed, 2020-08-12 08:47 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
1 |
816 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
0 |
641 |
by terabithia2011 Tue, 2021-01-26 10:12 |
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Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
0 |
767 |
by LanMei Wed, 2020-10-07 09:58 |
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Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
1,376 |
by tuleshwori Thu, 2020-05-21 02:08 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
0 |
2,012 |
by brspurri Mon, 2014-04-21 06:47 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
5 |
4,187 |
by tsztain Tue, 2018-12-11 13:41 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
2,236 |
by rmoretti Tue, 2015-07-14 14:59 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
6,911 |
by jarod Mon, 2014-04-21 06:47 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
1,676 |
by rmoretti Thu, 2017-08-03 09:29 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
2,386 |
by ssrb Fri, 2020-08-14 09:18 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
0 |
959 |
by benhardy Thu, 2020-05-28 08:45 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,252 |
by jhm13c Thu, 2017-03-02 12:01 |
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multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
0 |
602 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,529 |
by eskici Mon, 2014-04-21 06:47 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
4,877 |
by yogeshkd Mon, 2014-04-21 06:47 |
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multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
54,227 |
by rmoretti Fri, 2018-05-18 12:40 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
1 |
2,455 |
by tangzi Mon, 2023-03-06 09:50 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
4,625 |
by smlewis Thu, 2018-06-14 10:26 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
3,439 |
by tong Sun, 2018-06-24 23:30 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
1 |
1,838 |
by rmoretti Wed, 2019-07-10 09:22 |
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Nanobody design by chandana » Tue, 2022-08-09 20:36 |
0 |
599 |
by chandana Tue, 2022-08-09 20:36 |
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NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
1,277 |
by matteoferla Sat, 2021-06-19 03:07 |
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NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
0 |
893 |
by marinok Mon, 2020-09-28 14:11 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
5,719 |
by Anonymous Mon, 2014-04-21 06:47 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,436 |
by smlewis Mon, 2018-10-15 08:42 |
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neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
8,220 |
by helenah Thu, 2020-10-08 05:29 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
807 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,458 |
by rmoretti Tue, 2017-04-25 06:41 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,608 |
by jarod Mon, 2014-04-21 06:47 |
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No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
10,946 |
by rmoretti Fri, 2016-06-17 10:22 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
1,778 |
by rmoretti Fri, 2016-06-17 10:24 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,070 |
by jrcf Fri, 2016-02-12 16:42 |
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non-zero ddG of binding even without mutations by top-gun98 » Wed, 2023-06-07 17:19 |
0 |
18 |
by top-gun98 Wed, 2023-06-07 17:19 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
8 |
6,391 |
by e3lm Thu, 2022-05-26 12:51 |
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