You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter |
Replies | Views | Last post | |
|---|---|---|---|---|
|
membrane modeling error by benniu2004 » Mon, 2013-07-01 17:59 |
1 |
1,976 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
1,305 |
by jlapin Wed, 2018-08-01 07:15 |
|
|
membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,313 |
by ytao Mon, 2014-04-21 06:47 |
|
|
membrane scoring function performance by tevang » Wed, 2013-03-20 08:40 |
15 |
11,885 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Metal Ion in symmetric design by tschiex » Wed, 2020-07-08 05:28 |
0 |
415 |
by tschiex Wed, 2020-07-08 05:28 |
|
|
metalloprotein ab initio with glutamic acid by inorgchem » Tue, 2020-06-16 20:45 |
0 |
333 |
by inorgchem Tue, 2020-06-16 20:45 |
|
|
minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
809 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
|
|
minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
2,761 |
by alexn Mon, 2014-04-21 06:47 |
|
|
minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
0 |
1,811 |
by lanselibai Thu, 2015-01-29 00:50 |
|
|
minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
4,042 |
by fred Mon, 2014-04-21 06:48 |
|
|
Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
6 |
8,034 |
by lanselibai Wed, 2014-10-01 02:13 |
|
|
missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
1,027 |
by rmoretti Fri, 2019-04-26 12:13 |
|
|
Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
1,913 |
by e3lm Tue, 2021-09-14 10:02 |
|
|
Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
3 |
4,078 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
2,943 |
by Marius1987 Mon, 2016-03-14 04:34 |
|
|
Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
1,253 |
by BuddySphinx Sun, 2018-12-30 16:49 |
|
|
Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
1,589 |
by smlewis Wed, 2018-12-12 16:51 |
|
|
Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,314 |
by rmoretti Mon, 2017-05-15 08:54 |
|
|
modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
1 |
1,907 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
5 |
3,427 |
by rmoretti Mon, 2016-09-05 10:59 |
|
|
Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
2,561 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
2,835 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
2,198 |
by hzhekova Tue, 2018-01-16 10:31 |
|
|
Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,113 |
by nkemjika Mon, 2014-04-21 06:47 |
|
|
modeling phosphorylated residue by rosetter » Fri, 2011-03-18 08:13 |
7 |
6,607 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
1 |
1,573 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
|
|
Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
1 |
507 |
by jlawrie Wed, 2020-08-12 08:47 |
|
|
Modelling humanized camelid like antibody by terabithia2011 » Tue, 2021-01-26 10:12 |
0 |
324 |
by terabithia2011 Tue, 2021-01-26 10:12 |
|
|
Modelling of multi-component symmetrical structures by LanMei » Wed, 2020-10-07 09:58 |
0 |
453 |
by LanMei Wed, 2020-10-07 09:58 |
|
|
Modelling temperature dependent RNA structures by tuleshwori » Tue, 2020-05-19 01:16 |
2 |
846 |
by tuleshwori Thu, 2020-05-21 02:08 |
|
|
Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
0 |
1,789 |
by brspurri Mon, 2014-04-21 06:47 |
|
|
molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
5 |
2,969 |
by tsztain Tue, 2018-12-11 13:41 |
|
|
molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
1,883 |
by rmoretti Tue, 2015-07-14 14:59 |
|
|
mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
5,857 |
by jarod Mon, 2014-04-21 06:47 |
|
|
MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
1,248 |
by rmoretti Thu, 2017-08-03 09:29 |
|
|
mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
1 |
1,262 |
by ssrb Fri, 2020-08-14 09:18 |
|
|
mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
0 |
596 |
by benhardy Thu, 2020-05-28 08:45 |
|
|
mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
2,492 |
by jhm13c Thu, 2017-03-02 12:01 |
|
|
multi ligand docking using rosetta script by syntekabio2019 » Tue, 2021-04-13 19:31 |
0 |
280 |
by syntekabio2019 Tue, 2021-04-13 19:31 |
|
|
Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,083 |
by eskici Mon, 2014-04-21 06:47 |
|
|
Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
4,146 |
by yogeshkd Mon, 2014-04-21 06:47 |
|
|
multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12 |
51 |
46,296 |
by rmoretti Fri, 2018-05-18 12:40 |
|
|
Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
0 |
596 |
by elaine.thai Wed, 2020-05-13 18:07 |
|
|
Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
3,382 |
by smlewis Thu, 2018-06-14 10:26 |
|
|
Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
2,505 |
by tong Sun, 2018-06-24 23:30 |
|
|
Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
1 |
1,304 |
by rmoretti Wed, 2019-07-10 09:22 |
|
|
NCAA attached at two points by tsztain » Wed, 2021-06-16 15:20 |
3 |
453 |
by matteoferla Sat, 2021-06-19 03:07 |
|
|
NCAA Rotamers for Cyclosporin by marinok » Mon, 2020-09-28 14:11 |
0 |
488 |
by marinok Mon, 2020-09-28 14:11 |
|
|
ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
4,930 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
1,715 |
by smlewis Mon, 2018-10-15 08:42 |
|
|
neutral N-term and C-term by nawsad » Sun, 2013-06-09 10:20 |
7 |
6,945 |
by helenah Thu, 2020-10-08 05:29 |
|
|
new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
561 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
|
|
New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
1,873 |
by rmoretti Tue, 2017-04-25 06:41 |
|
|
No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,285 |
by jarod Mon, 2014-04-21 06:47 |
|
|
No output pdb files after docking protein and DNA/RNA by yzq » Thu, 2012-10-25 08:23 |
11 |
9,080 |
by rmoretti Fri, 2016-06-17 10:22 |
|
|
No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
1,384 |
by rmoretti Fri, 2016-06-17 10:24 |
|
|
No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
2,508 |
by jrcf Fri, 2016-02-12 16:42 |
|
|
Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
5 |
4,420 |
by Nolanm15 Tue, 2020-06-30 08:43 |
|
|
Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
2,934 |
by jrcf Mon, 2015-09-21 11:10 |
|
|
not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
817 |
by xinmiaohe Mon, 2020-10-19 13:18 |
|
|
nstruct vs. trials? by chrisHKL » Mon, 2020-03-02 13:22 |
2 |
870 |
by chrisHKL Wed, 2020-03-04 10:49 |
|
|
null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,094 |
by fred Mon, 2014-04-21 06:47 |
|
|
Number of max allowed mutations from WT sequence by mouung » Fri, 2020-09-04 02:33 |
2 |
838 |
by amorin Fri, 2021-02-12 08:53 |
|
|
number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
2,121 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
OptimizeMembranePositionMover - This element is not expected by bjharris » Wed, 2020-07-01 23:21 |
2 |
936 |
by bjharris Thu, 2020-07-02 11:09 |
|
|
Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
1,463 |
by danpf Fri, 2020-02-21 18:32 |
|
|
Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,254 |
by rmoretti Thu, 2014-03-13 08:04 |
|
|
ORBITAL records in self generated .params (ligands) by ast » Thu, 2014-03-06 07:22 |
9 |
6,890 |
by ast Thu, 2014-03-13 07:17 |
|
|
output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
1 |
1,015 |
by malkeet.singh Wed, 2017-12-06 02:02 |
|
|
Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
1 |
1,729 |
by rmoretti Mon, 2015-02-09 12:33 |
|
|
Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
4,444 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
5,525 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
1 |
1,355 |
by rmoretti Mon, 2017-07-03 09:17 |
|
|
Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
1,840 |
by smlewis Fri, 2017-01-27 07:20 |
|
|
pair energies across interface by irini » Fri, 2012-02-10 09:17 |
5 |
3,553 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
parameterizing new residues by chiendarret » Fri, 2012-02-03 22:59 |
3 |
6,221 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
5 |
7,306 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
|
|
partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
3,222 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
1 |
1,168 |
by rmoretti Thu, 2017-05-18 13:51 |
|
|
Patch to impose tetrahedral geometry on backbone O atom by georg » Thu, 2021-04-08 09:30 |
0 |
262 |
by georg Thu, 2021-04-08 09:31 |
|
|
PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
0 |
287 |
by code_Monkey Mon, 2021-04-05 10:40 |
|
|
PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
1 |
692 |
by rmoretti Mon, 2019-08-26 12:17 |
|
|
PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
5,202 |
by brspurri Mon, 2014-04-21 06:47 |
|
|
PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
1 |
875 |
by smlewis Fri, 2018-07-27 13:32 |
|
|
pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,016 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
PEPSPEC by Neeraj » Wed, 2018-01-03 02:24 |
1 |
1,060 |
by Andre Serobian Wed, 2020-07-08 04:44 |
|
|
Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
2,880 |
by loreseeker Mon, 2014-04-21 06:47 |
|
|
Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
0 |
339 |
by Soler Wed, 2020-09-16 19:08 |
|
|
pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
1 |
579 |
by Andre Serobian Tue, 2020-07-28 23:26 |
|
|
pepspec anchor dock by Astghik » Tue, 2020-10-20 05:31 |
6 |
1,454 |
by Pappmaschee Thu, 2020-12-17 02:24 |
|
|
Pepspec Anchor Dock by Soler » Fri, 2020-09-18 08:09 |
0 |
502 |
by Soler Fri, 2020-09-18 08:09 |
|
|
Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
3,309 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,263 |
by shaunmk Mon, 2015-04-27 02:33 |
|
|
Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,148 |
by rmoretti Wed, 2015-09-02 12:33 |
|
|
Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
2,189 |
by sn Mon, 2017-03-06 10:03 |
|
|
PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
2,560 |
by attesor Mon, 2014-06-16 07:34 |
|
|
Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
1 |
1,275 |
by rmoretti Fri, 2017-09-15 13:11 |
|
|
PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
0 |
907 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
|
|
placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
2,627 |
by ic3reyes Mon, 2014-04-21 06:47 |
|
|
pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
3,309 |
by matteoferla Tue, 2018-10-30 02:54 |
Log in to post new content in the forum.
