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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
1,976 by smlewis
Mon, 2014-04-21 06:48
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
1,305 by jlapin
Wed, 2018-08-01 07:15
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,313 by ytao
Mon, 2014-04-21 06:47
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
11,885 by smlewis
Mon, 2014-04-21 06:47
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
415 by tschiex
Wed, 2020-07-08 05:28
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
333 by inorgchem
Tue, 2020-06-16 20:45
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
809 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
2,761 by alexn
Mon, 2014-04-21 06:47
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
1,811 by lanselibai
Thu, 2015-01-29 00:50
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
4,042 by fred
Mon, 2014-04-21 06:48
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
8,034 by lanselibai
Wed, 2014-10-01 02:13
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,027 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
1,913 by e3lm
Tue, 2021-09-14 10:02
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
4,078 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
2,943 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
1,253 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
1,589 by smlewis
Wed, 2018-12-12 16:51
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,314 by rmoretti
Mon, 2017-05-15 08:54
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
1,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
3,427 by rmoretti
Mon, 2016-09-05 10:59
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,561 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
2,835 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,198 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,113 by nkemjika
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
6,607 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
1,573 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
507 by jlawrie
Wed, 2020-08-12 08:47
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
324 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic Modelling of multi-component symmetrical structures
by LanMei » Wed, 2020-10-07 09:58
0
453 by LanMei
Wed, 2020-10-07 09:58
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
846 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
1,789 by brspurri
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
2,969 by tsztain
Tue, 2018-12-11 13:41
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
1,883 by rmoretti
Tue, 2015-07-14 14:59
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
5,857 by jarod
Mon, 2014-04-21 06:47
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,248 by rmoretti
Thu, 2017-08-03 09:29
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
1,262 by ssrb
Fri, 2020-08-14 09:18
Normal topic mp_transform optimize with franklin2019 scoring
by benhardy » Thu, 2020-05-28 08:35
0
596 by benhardy
Thu, 2020-05-28 08:45
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
2,492 by jhm13c
Thu, 2017-03-02 12:01
Normal topic multi ligand docking using rosetta script
by syntekabio2019 » Tue, 2021-04-13 19:31
0
280 by syntekabio2019
Tue, 2021-04-13 19:31
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
3,083 by eskici
Mon, 2014-04-21 06:47
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
4,146 by yogeshkd
Mon, 2014-04-21 06:47
Hot topic multiple template homolgy modelling (Page: 1, 2)
by pdbb » Tue, 2012-10-30 08:12
51
46,296 by rmoretti
Fri, 2018-05-18 12:40
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
0
596 by elaine.thai
Wed, 2020-05-13 18:07
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
3,382 by smlewis
Thu, 2018-06-14 10:26
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
2,505 by tong
Sun, 2018-06-24 23:30
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
1,304 by rmoretti
Wed, 2019-07-10 09:22
Normal topic NCAA attached at two points
by tsztain » Wed, 2021-06-16 15:20
3
453 by matteoferla
Sat, 2021-06-19 03:07
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
488 by marinok
Mon, 2020-09-28 14:11
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
4,930 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
1,715 by smlewis
Mon, 2018-10-15 08:42
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
6,945 by helenah
Thu, 2020-10-08 05:29
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
561 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic New CSRosetta toolbox
by sn » Mon, 2017-04-24 12:42
3
1,873 by rmoretti
Tue, 2017-04-25 06:41
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,285 by jarod
Mon, 2014-04-21 06:47
Normal topic No output pdb files after docking protein and DNA/RNA
by yzq » Thu, 2012-10-25 08:23
11
9,080 by rmoretti
Fri, 2016-06-17 10:22
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,384 by rmoretti
Fri, 2016-06-17 10:24
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,508 by jrcf
Fri, 2016-02-12 16:42
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
5
4,420 by Nolanm15
Tue, 2020-06-30 08:43
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
2,934 by jrcf
Mon, 2015-09-21 11:10
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
817 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic nstruct vs. trials?
by chrisHKL » Mon, 2020-03-02 13:22
2
870 by chrisHKL
Wed, 2020-03-04 10:49
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,094 by fred
Mon, 2014-04-21 06:47
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
838 by amorin
Fri, 2021-02-12 08:53
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,121 by smlewis
Mon, 2014-04-21 06:47
Normal topic OptimizeMembranePositionMover - This element is not expected
by bjharris » Wed, 2020-07-01 23:21
2
936 by bjharris
Thu, 2020-07-02 11:09
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
1,463 by danpf
Fri, 2020-02-21 18:32
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,254 by rmoretti
Thu, 2014-03-13 08:04
Normal topic ORBITAL records in self generated .params (ligands)
by ast » Thu, 2014-03-06 07:22
9
6,890 by ast
Thu, 2014-03-13 07:17
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,015 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
1,729 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
4,444 by rmoretti
Mon, 2014-04-21 06:47
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
5,525 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
1,355 by rmoretti
Mon, 2017-07-03 09:17
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
1,840 by smlewis
Fri, 2017-01-27 07:20
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
3,553 by Anonymous
Mon, 2014-04-21 06:47
Normal topic parameterizing new residues
by chiendarret » Fri, 2012-02-03 22:59
3
6,221 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
7,306 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,222 by smlewis
Mon, 2014-04-21 06:47
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,168 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Patch to impose tetrahedral geometry on backbone O atom
by georg » Thu, 2021-04-08 09:30
0
262 by georg
Thu, 2021-04-08 09:31
Normal topic PDB Clustering
by code_Monkey » Mon, 2021-04-05 10:40
0
287 by code_Monkey
Mon, 2021-04-05 10:40
Normal topic PDB file name too long to be handled by file system
by dave » Thu, 2019-08-08 03:10
1
692 by rmoretti
Mon, 2019-08-26 12:17
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
5,202 by brspurri
Mon, 2014-04-21 06:47
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
875 by smlewis
Fri, 2018-07-27 13:32
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
3,016 by rmoretti
Mon, 2014-04-21 06:48
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,060 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
2,880 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
339 by Soler
Wed, 2020-09-16 19:08
Normal topic pepspec anchor dock
by Andre Serobian » Tue, 2020-07-28 05:51
1
579 by Andre Serobian
Tue, 2020-07-28 23:26
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
1,454 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic Pepspec Anchor Dock
by Soler » Fri, 2020-09-18 08:09
0
502 by Soler
Fri, 2020-09-18 08:09
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
3,309 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,263 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,148 by rmoretti
Wed, 2015-09-02 12:33
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,189 by sn
Mon, 2017-03-06 10:03
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
2,560 by attesor
Mon, 2014-06-16 07:34
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
1,275 by rmoretti
Fri, 2017-09-15 13:11
Normal topic PlaceStub filter
by a-eatemadi@razi... » Wed, 2017-11-15 04:19
0
907 by a-eatemadi@razi...
Mon, 2017-12-04 23:52
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
2,627 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,309 by matteoferla
Tue, 2018-10-30 02:54
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