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Rosetta 3 - Applications

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Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55
2
4,779 by frichter
Mon, 2014-04-21 06:47
Normal topic Ligand docking at specific orientation
by ShiranBZ » Mon, 2020-04-13 20:46
1
1,200 by matteoferla
Mon, 2020-05-04 02:02
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
1,597 by rmoretti
Tue, 2017-10-17 09:03
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
2,150 by rmoretti
Thu, 2016-06-23 10:55
Normal topic Ligand docking with constraint
by Alison_Yajie » Wed, 2020-06-24 12:34
0
831 by Alison_Yajie
Wed, 2020-06-24 12:34
Normal topic ligand docking with MPI
by Ruska322 » Wed, 2019-09-04 03:47
2
1,750 by Ruska322
Fri, 2019-09-06 07:13
Normal topic Ligand Docking with ROSETTA
by sc19 » Thu, 2022-07-14 01:32
0
902 by sc19
Thu, 2022-07-14 01:34
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
4,799 by rmoretti
Mon, 2018-11-12 14:31
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
3,004 by brspurri
Mon, 2017-05-15 11:48
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
7,259 by rmoretti
Wed, 2017-01-11 12:53
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,623 by rmoretti
Mon, 2014-05-12 15:08
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,988 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
2,992 by staciekim
Thu, 2017-08-17 17:06
Normal topic Ligand Rotamer Control in Macther
by Hirbond » Tue, 2022-10-25 13:01
0
1,699 by Hirbond
Wed, 2022-10-26 12:57
Normal topic ligand_docking
by yang » Thu, 2023-02-16 04:37
2
2,388 by yang
Wed, 2023-02-22 19:18
Normal topic ligand_docking ligand preparation
by Alison_Yajie » Thu, 2020-05-21 10:21
2
1,596 by Alison_Yajie
Wed, 2020-06-24 12:38
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
2,232 by DGR95
Wed, 2021-04-28 16:13
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
0
936 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-07-02 07:05
0
884 by Alison_Yajie
Thu, 2020-07-02 07:10
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
5,033 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ligand_docking_error
by Alison_Yajie » Mon, 2020-04-20 12:27
3
2,208 by YuFei
Sat, 2020-05-30 00:12
Normal topic Limit on backbone movement in relax?
by SWM » Fri, 2020-01-24 07:35
0
905 by SWM
Fri, 2020-01-24 07:35
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,901 by sacch
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
5,882 by Loki01
Thu, 2018-02-15 13:54
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
0
768 by sam_dc
Sat, 2021-10-09 05:38
Normal topic Local docking- should I use KIC?
by seayoung lee » Fri, 2022-05-27 02:45
0
884 by seayoung lee
Fri, 2022-05-27 02:45
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
4,547 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
1,548 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
3,880 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
4,693 by smlewis
Wed, 2018-08-08 15:48
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
5,896 by lzx32
Mon, 2014-04-21 06:47
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,705 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Loop modeling with constraints
by agctomer » Sat, 2021-03-20 03:53
3
1,897 by agctomer
Thu, 2021-04-08 07:37
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
1,689 by rmoretti
Mon, 2017-03-06 12:39
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
2,235 by rmoretti
Sat, 2015-06-20 20:07
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
5,250 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Loop prediction
by yzhou » Thu, 2013-07-18 14:24
3
4,290 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic loop re-modeling std::out_of_range
by rlwoltz » Tue, 2013-03-12 18:11
9
8,805 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
3,111 by smlewis
Mon, 2014-04-21 06:47
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
4,187 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
2,276 by rmoretti
Mon, 2015-05-25 12:30
Normal topic LoopModeler mover unable to determine cut point
by gszwabowski » Mon, 2020-06-01 13:12
1
1,551 by matteoferla
Thu, 2020-07-02 07:27
Normal topic loop_length_changing
by lanselibai » Tue, 2014-10-14 04:10
14
13,623 by lanselibai
Fri, 2014-11-07 02:06
Normal topic Lots of Prepacking Jobs for Snugdock Failing
by katherinemccoy » Tue, 2023-02-28 18:17
0
2,264 by katherinemccoy
Mon, 2023-03-13 19:10
Normal topic Macrocycle from a C-terminal amidated peptide
by almeida85 » Thu, 2022-08-18 07:53
0
888 by almeida85
Thu, 2022-08-18 07:53
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
6,100 by Corvin
Tue, 2019-10-15 01:12
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
5,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,668 by smlewis
Mon, 2014-04-21 06:48
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
1,914 by almeida85
Tue, 2020-09-01 01:29
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
4,904 by smlewis
Mon, 2014-04-21 06:47
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
1
1,253 by brspurri
Wed, 2021-01-20 08:11
Normal topic Match: Outputs with 0 hits for cst and clashes with sidechains
by uka147 » Wed, 2023-11-08 06:11
0
208 by uka147
Thu, 2023-11-09 01:36
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
6,210 by siciliu
Thu, 2014-04-10 09:50
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
3,604 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic membrane ab initio modeling application with constraints
by ytao » Thu, 2012-11-08 11:56
2
4,234 by ytao
Mon, 2014-04-21 06:47
Normal topic membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template?
by fglaser » Thu, 2011-04-07 07:57
0
2,253 by fglaser
Mon, 2014-04-21 06:47
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
1,516 by rmoretti
Mon, 2019-06-24 14:39
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,724 by benhardy
Wed, 2020-09-30 04:24
Normal topic Membrane Abinitio modeling error
by jkyan007 » Thu, 2020-10-29 03:30
1
1,143 by noahC_noahDo
Tue, 2020-11-17 10:35
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
3,178 by chelsell
Wed, 2014-10-08 12:25
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
2,498 by smlewis
Mon, 2014-04-21 06:48
Normal topic Membrane protein protocol on PyRosetta
by jlapin » Sat, 2018-07-28 14:41
2
2,187 by jlapin
Wed, 2018-08-01 07:15
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,954 by ytao
Mon, 2014-04-21 06:47
Hot topic membrane scoring function performance
by tevang » Wed, 2013-03-20 08:40
15
14,987 by smlewis
Mon, 2014-04-21 06:47
Normal topic Memory Leak in FragmentPicker.cxx11thread application
by Corvin » Tue, 2023-07-11 06:04
0
267 by Corvin
Thu, 2023-07-13 05:30
Normal topic Memory Leak: Relax Density MPI RAM overusage kills process
by mmfarrugia » Sun, 2023-12-31 12:02
5
350 by mmfarrugia
Fri, 2024-01-12 10:35
Normal topic Metal Ion in symmetric design
by tschiex » Wed, 2020-07-08 05:28
0
851 by tschiex
Wed, 2020-07-08 05:28
Normal topic metalloprotein ab initio with glutamic acid
by inorgchem » Tue, 2020-06-16 20:45
0
705 by inorgchem
Tue, 2020-06-16 20:45
Normal topic minimize_ppi.mpi.linuxgccrelease doesn't use jd2?
by e3lm » Tue, 2022-05-17 11:58
0
944 by e3lm
Tue, 2022-05-17 11:58
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
1,879 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
3,545 by alexn
Mon, 2014-04-21 06:47
Normal topic minirosetta: how to reserve (inter-chain) disulfides after relax ?
by lanselibai » Sat, 2015-01-24 10:56
0
2,237 by lanselibai
Thu, 2015-01-29 00:50
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
5,082 by fred
Mon, 2014-04-21 06:48
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
10,181 by lanselibai
Wed, 2014-10-01 02:13
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,829 by rmoretti
Fri, 2019-04-26 12:13
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
3,570 by e3lm
Tue, 2021-09-14 10:02
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 13:41
1
450 by rmoretti
Fri, 2023-05-05 13:44
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
5,095 by smlewis
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
3,868 by Marius1987
Mon, 2016-03-14 04:34
Normal topic Model monomer to fit cryo density map of a filament
by BuddySphinx » Wed, 2018-12-12 18:58
2
2,076 by BuddySphinx
Sun, 2018-12-30 16:49
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
2,803 by smlewis
Wed, 2018-12-12 16:51
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
1,947 by rmoretti
Mon, 2017-05-15 08:54
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
2,454 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
4,740 by rmoretti
Mon, 2016-09-05 10:59
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
3,250 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
3,434 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
3,009 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
4,011 by nkemjika
Mon, 2014-04-21 06:47
Normal topic modeling phosphorylated residue
by rosetter » Fri, 2011-03-18 08:13
7
8,486 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
2,258 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
1,083 by jlawrie
Wed, 2020-08-12 08:47
Normal topic Modelling at defined pH - for pmutscan - pH:mode not working
by cagfa1 » Tue, 2022-03-15 04:05
1
1,375 by Rituparna_Saman...
Wed, 2022-03-23 11:21
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
838 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic Modelling of multi-component symmetrical structures
by LanMei » Wed, 2020-10-07 09:58
0
957 by LanMei
Wed, 2020-10-07 09:58
Normal topic Modelling temperature dependent RNA structures
by tuleshwori » Tue, 2020-05-19 01:16
2
1,669 by tuleshwori
Thu, 2020-05-21 02:08
Normal topic Molecular Replacement with multiple chains
by brspurri » Fri, 2011-06-10 08:25
0
2,153 by brspurri
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
4,918 by tsztain
Tue, 2018-12-11 13:41
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
2,471 by rmoretti
Tue, 2015-07-14 14:59
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
7,470 by jarod
Mon, 2014-04-21 06:47
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,953 by rmoretti
Thu, 2017-08-03 09:29
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