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Rosetta 3 - Applications
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
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2,174 |
by rmoretti Mon, 2014-04-21 06:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,180 |
by Pernille Wed, 2014-10-08 10:41 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
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2,193 |
by banshee Mon, 2016-09-12 23:41 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,195 |
by rmoretti Thu, 2017-02-02 09:02 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,196 |
by rmoretti Mon, 2014-04-21 06:48 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
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2,198 |
by rmoretti Mon, 2014-04-21 06:48 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,204 |
by rmoretti Mon, 2014-04-21 06:47 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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2,206 |
by mintseris Wed, 2015-06-24 22:04 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,206 |
by smlewis Mon, 2014-04-21 06:47 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
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2,212 |
by rmoretti Thu, 2014-03-13 08:04 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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2,222 |
by rmoretti Fri, 2019-03-29 12:25 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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2,224 |
by rmoretti Fri, 2015-09-04 10:25 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
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2,225 |
by rmoretti Thu, 2018-06-28 12:44 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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2,229 |
by franfdez Mon, 2014-07-28 01:04 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
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2,233 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
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2,234 |
by brspurri Thu, 2017-06-01 10:58 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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2,239 |
by attesor Tue, 2015-11-17 07:36 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,240 |
by smlewis Mon, 2014-04-21 06:47 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
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2,243 |
by cossio Tue, 2015-09-15 12:48 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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2,245 |
by smlewis Mon, 2014-04-21 06:47 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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2,246 |
by jadolfbr Mon, 2014-10-20 13:42 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
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2,255 |
by smlewis Mon, 2014-04-21 06:47 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,255 |
by jarod Mon, 2014-04-21 06:47 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
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2,259 |
by rmoretti Fri, 2018-11-23 11:23 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,262 |
by rmoretti Mon, 2014-04-21 06:47 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
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2,265 |
by ytao Mon, 2014-04-21 06:47 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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2,279 |
by rmoretti Tue, 2016-01-05 08:35 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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2,284 |
by rmoretti Mon, 2014-08-04 14:51 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,285 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
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2,289 |
by bjharris Sun, 2020-08-23 14:03 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
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2,293 |
by mpacella Mon, 2014-04-21 06:47 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,309 |
by cossio Mon, 2015-01-19 07:14 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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2,314 |
by smlewis Mon, 2014-05-12 08:32 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
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2,319 |
by rmoretti Tue, 2017-10-10 09:58 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
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2,333 |
by smlewis Mon, 2014-04-21 06:48 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
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2,344 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
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2,361 |
by everyday847 Wed, 2017-05-17 20:03 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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2,367 |
by dgront Mon, 2014-04-21 06:47 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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2,371 |
by ahonegger Fri, 2014-06-06 09:31 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
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2,374 |
by rmoretti Thu, 2017-04-20 13:59 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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2,374 |
by chelsell Wed, 2014-10-08 12:25 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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2,376 |
by brspurri Sat, 2017-08-26 07:08 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
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2,383 |
by lchen Mon, 2014-04-21 06:47 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
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2,391 |
by exchhattu Mon, 2014-04-21 06:47 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,391 |
by rmoretti Mon, 2015-05-25 11:49 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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2,391 |
by rmoretti Sat, 2015-07-11 13:38 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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2,394 |
by jrporter Wed, 2017-07-05 06:30 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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2,403 |
by rlwoltz Mon, 2014-04-21 06:47 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,406 |
by lanselibai Wed, 2015-01-21 02:40 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
2,409 |
by Yero Thu, 2019-07-18 01:39 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
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2,410 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
2,410 |
by tong Sun, 2018-06-24 23:30 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,412 |
by jharamesh Mon, 2014-11-03 12:50 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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2,415 |
by rmoretti Mon, 2014-10-06 16:00 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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2,416 |
by jadolfbr Mon, 2014-04-21 06:47 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
2,431 |
by jhm13c Thu, 2017-03-02 12:01 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
2,432 |
by MajorID Mon, 2014-04-21 06:47 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
2,432 |
by subha Fri, 2017-06-09 15:42 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
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2,443 |
by rmoretti Mon, 2014-04-21 06:48 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
2,444 |
by smlewis Mon, 2014-04-21 06:47 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
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2,444 |
by rmoretti Fri, 2015-01-02 11:45 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
2,445 |
by Wizard Sun, 2015-04-26 22:36 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
2,446 |
by smlewis Wed, 2017-12-13 09:54 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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2,447 |
by rmoretti Fri, 2016-04-29 09:21 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
2,457 |
by jrcf Fri, 2016-02-12 16:42 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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2,459 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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2,468 |
by felipet Wed, 2014-07-02 07:26 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
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2,474 |
by smlewis Mon, 2014-04-21 06:47 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
5 |
2,476 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
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2,480 |
by dee2711453 Fri, 2016-03-11 21:32 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
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2,494 |
by smlewis Sat, 2017-12-23 15:56 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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2,498 |
by krlitros87 Wed, 2014-10-22 09:31 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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2,499 |
by attesor Mon, 2014-06-16 07:34 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
2,505 |
by sacch Mon, 2014-04-21 06:47 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
2,515 |
by mark.wilson Mon, 2014-04-21 06:47 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
2,520 |
by tfliu Mon, 2014-04-21 06:48 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
2,520 |
by smlewis Mon, 2014-04-21 06:47 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
2,522 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
4 |
2,524 |
by MJG Tue, 2017-04-04 23:59 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
2,526 |
by rmoretti Tue, 2016-07-12 09:05 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
2,533 |
by dfcoelho Tue, 2018-10-16 09:05 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
2,537 |
by a_s_a Mon, 2014-04-21 06:47 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
2,539 |
by jadolfbr Thu, 2020-03-05 07:02 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
2 |
2,542 |
by fred Mon, 2014-04-21 06:48 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
2,543 |
by ast Mon, 2014-04-21 06:48 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
2,554 |
by rmoretti Thu, 2015-09-17 12:47 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
2,563 |
by jennifer Fri, 2015-03-27 05:56 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
2,577 |
by rmoretti Mon, 2014-05-12 08:25 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
2,578 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
1 |
2,581 |
by rmoretti Mon, 2014-04-21 06:48 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
2,591 |
by ic3reyes Mon, 2014-04-21 06:47 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
2,592 |
by brspurri Fri, 2017-03-24 11:35 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
2,596 |
by smlewis Tue, 2017-07-11 07:53 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
2,597 |
by lanselibai Mon, 2014-10-13 10:10 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
2,600 |
by sumukh21 Mon, 2014-04-21 06:47 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
2,618 |
by ahonegger Mon, 2014-05-12 09:08 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
2,624 |
by smlewis Mon, 2014-04-21 06:47 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
2,626 |
by yperez Mon, 2014-04-21 06:47 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
7 |
2,636 |
by dantimatter Wed, 2019-11-06 09:51 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
2,650 |
by lanselibai Tue, 2015-01-13 14:25 |
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