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Rosetta 3 - Applications

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Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,228 by brspurri
Mon, 2017-05-15 11:48
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
2,238 by asbelx
Mon, 2018-06-18 22:34
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,239 by sushreet
Tue, 2014-08-26 13:02
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,245 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
2,248 by bogac
Tue, 2017-03-07 02:11
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,249 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,254 by rmoretti
Thu, 2018-06-28 12:58
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,256 by rmoretti
Tue, 2014-11-04 08:53
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,260 by subha
Fri, 2018-04-20 12:49
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,262 by sacch
Mon, 2014-04-21 06:47
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,266 by rmoretti
Wed, 2015-03-25 11:33
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,266 by rmoretti
Mon, 2014-04-21 06:48
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
2,281 by jharamesh
Sat, 2015-08-08 19:51
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,281 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,282 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
2,285 by lanselibai
Tue, 2014-11-11 04:42
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
2,287 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,296 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,297 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,301 by Loki01
Thu, 2018-04-12 08:28
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
2,308 by ashu4487
Mon, 2018-07-16 19:24
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,313 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,316 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,319 by ronj
Mon, 2014-04-21 06:47
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
2,319 by lanselibai
Fri, 2014-10-17 03:36
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,320 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,322 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
2,324 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,332 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,336 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,340 by rmoretti
Thu, 2014-03-13 08:04
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,342 by rmoretti
Mon, 2014-04-21 06:48
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,350 by Pernille
Wed, 2014-10-08 10:41
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,355 by rmoretti
Thu, 2017-08-24 11:00
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,356 by jarod
Mon, 2014-04-21 06:47
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,358 by smlewis
Wed, 2017-02-15 07:43
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
2,360 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,363 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,366 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
2,371 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,372 by rmoretti
Thu, 2017-02-02 09:02
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
2,382 by banshee
Mon, 2016-09-12 23:41
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,384 by rmoretti
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,387 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,387 by cossio
Mon, 2015-01-19 07:14
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,388 by sn
Mon, 2017-03-06 10:03
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
2,393 by franfdez
Mon, 2014-07-28 01:04
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,394 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
2,398 by rmoretti
Tue, 2019-07-09 10:13
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,409 by mintseris
Wed, 2015-06-24 22:04
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,420 by rmoretti
Mon, 2014-08-04 14:51
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
2,420 by mpacella
Mon, 2014-04-21 06:47
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,424 by ytao
Mon, 2014-04-21 06:47
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,426 by rmoretti
Tue, 2016-01-05 08:35
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
2,434 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
2,439 by rmoretti
Fri, 2019-03-29 09:30
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,441 by smlewis
Mon, 2014-04-21 06:48
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,451 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,457 by cossio
Tue, 2015-09-15 12:48
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,458 by rmoretti
Fri, 2015-09-04 10:25
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,462 by attesor
Tue, 2015-11-17 07:36
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
2,462 by brspurri
Thu, 2017-06-01 10:58
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
2,466 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,474 by smlewis
Mon, 2014-04-21 06:47
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,489 by smlewis
Mon, 2014-05-12 08:32
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
2,500 by dgront
Mon, 2014-04-21 06:47
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
2,510 by chelsell
Wed, 2014-10-08 12:25
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,513 by lchen
Mon, 2014-04-21 06:47
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,518 by jharamesh
Mon, 2014-11-03 12:50
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
2,531 by rmoretti
Thu, 2018-06-28 12:44
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,537 by rmoretti
Mon, 2015-05-25 11:49
Normal topic How to use Rosetta to DISCARD a protein-protein docking interface?
by cossio » Tue, 2015-05-26 06:24
2
2,538 by rmoretti
Sat, 2015-07-11 13:38
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
2,538 by ahonegger
Fri, 2014-06-06 09:31
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
2,551 by lanselibai
Wed, 2015-01-21 02:40
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
2,554 by rmoretti
Fri, 2018-11-23 11:23
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,562 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
2,563 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
2,564 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,566 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
2,569 by rmoretti
Tue, 2017-10-10 09:58
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,585 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
2,586 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,587 by rmoretti
Fri, 2015-01-02 11:45
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
2,590 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
2,601 by MajorID
Mon, 2014-04-21 06:47
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
2,612 by rmoretti
Mon, 2014-10-06 16:00
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
2,617 by smlewis
Mon, 2014-04-21 06:47
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,621 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,628 by rmoretti
Thu, 2017-04-20 13:59
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
2,629 by felipet
Wed, 2014-07-02 07:26
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
2,629 by brspurri
Sat, 2017-08-26 07:08
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
2,629 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,637 by jrcf
Fri, 2016-02-12 16:42
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
2,638 by Wizard
Sun, 2015-04-26 22:36
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
2,650 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
2,650 by sacch
Mon, 2014-04-21 06:47
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
2,666 by bjharris
Sun, 2020-08-23 14:03
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
2,675 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,677 by smlewis
Mon, 2014-04-21 06:47
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
2,685 by tfliu
Mon, 2014-04-21 06:48
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