You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies |
Views |
Last post | |
|---|---|---|---|---|
|
Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
2 |
2,228 |
by brspurri Mon, 2017-05-15 11:48 |
|
|
The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
2,238 |
by asbelx Mon, 2018-06-18 22:34 |
|
|
Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,239 |
by sushreet Tue, 2014-08-26 13:02 |
|
|
Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
2,245 |
by allan.ferrari Fri, 2015-08-28 12:07 |
|
|
KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,248 |
by bogac Tue, 2017-03-07 02:11 |
|
|
Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,249 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,254 |
by rmoretti Thu, 2018-06-28 12:58 |
|
|
"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,256 |
by rmoretti Tue, 2014-11-04 08:53 |
|
|
select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
2,260 |
by subha Fri, 2018-04-20 12:49 |
|
|
limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,262 |
by sacch Mon, 2014-04-21 06:47 |
|
|
References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,266 |
by rmoretti Wed, 2015-03-25 11:33 |
|
|
rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,266 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,281 |
by jharamesh Sat, 2015-08-08 19:51 |
|
|
Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
2,281 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
|
|
Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
2,282 |
by johnnytam100 Sun, 2019-03-03 23:42 |
|
|
Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,285 |
by lanselibai Tue, 2014-11-11 04:42 |
|
|
rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
2,287 |
by ladimafakher Thu, 2018-11-01 03:47 |
|
|
rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,296 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
1 |
2,297 |
by rmoretti Mon, 2015-01-26 12:15 |
|
|
Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
2,301 |
by Loki01 Thu, 2018-04-12 08:28 |
|
|
Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,308 |
by ashu4487 Mon, 2018-07-16 19:24 |
|
|
ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,313 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,316 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,319 |
by ronj Mon, 2014-04-21 06:47 |
|
|
How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
2,319 |
by lanselibai Fri, 2014-10-17 03:36 |
|
|
Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
2,320 |
by hzhekova Tue, 2018-01-16 10:31 |
|
|
Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,322 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
2,324 |
by johnnytam100 Thu, 2019-04-25 19:28 |
|
|
Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
1 |
2,332 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
2,336 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
|
|
Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,340 |
by rmoretti Thu, 2014-03-13 08:04 |
|
|
profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,342 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,350 |
by Pernille Wed, 2014-10-08 10:41 |
|
|
Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
2,355 |
by rmoretti Thu, 2017-08-24 11:00 |
|
|
No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,356 |
by jarod Mon, 2014-04-21 06:47 |
|
|
Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
2,358 |
by smlewis Wed, 2017-02-15 07:43 |
|
|
The Usage of motifgraft by Sunyp_IM » Sun, 2017-11-19 20:22 |
2 |
2,360 |
by Sunyp_IM Mon, 2017-11-20 19:20 |
|
|
How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
2,363 |
by rmoretti Wed, 2017-03-01 13:10 |
|
|
Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
1 |
2,366 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,371 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
2,372 |
by rmoretti Thu, 2017-02-02 09:02 |
|
|
refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
2,382 |
by banshee Mon, 2016-09-12 23:41 |
|
|
cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
2,384 |
by rmoretti Mon, 2014-04-21 06:47 |
|
|
InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,387 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
0 |
2,387 |
by cossio Mon, 2015-01-19 07:14 |
|
|
Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
2,388 |
by sn Mon, 2017-03-06 10:03 |
|
|
Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
2,393 |
by franfdez Mon, 2014-07-28 01:04 |
|
|
Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
1 |
2,394 |
by jadolfbr Mon, 2014-10-20 13:42 |
|
|
Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
2,398 |
by rmoretti Tue, 2019-07-09 10:13 |
|
|
docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
2,409 |
by mintseris Wed, 2015-06-24 22:04 |
|
|
Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
2,420 |
by rmoretti Mon, 2014-08-04 14:51 |
|
|
RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
2,420 |
by mpacella Mon, 2014-04-21 06:47 |
|
|
membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,424 |
by ytao Mon, 2014-04-21 06:47 |
|
|
ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
2,426 |
by rmoretti Tue, 2016-01-05 08:35 |
|
|
ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
2,434 |
by malkeet.singh Mon, 2018-05-21 04:26 |
|
|
Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
2,439 |
by rmoretti Fri, 2019-03-29 09:30 |
|
|
homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,441 |
by smlewis Mon, 2014-04-21 06:48 |
|
|
Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
2,451 |
by syoifczeri Tue, 2015-03-10 23:08 |
|
|
Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
2,457 |
by cossio Tue, 2015-09-15 12:48 |
|
|
ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
2,458 |
by rmoretti Fri, 2015-09-04 10:25 |
|
|
very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,462 |
by attesor Tue, 2015-11-17 07:36 |
|
|
Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
2,462 |
by brspurri Thu, 2017-06-01 10:58 |
|
|
Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
2,466 |
by rmoretti Fri, 2019-03-29 12:25 |
|
|
Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,474 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
2,489 |
by smlewis Mon, 2014-05-12 08:32 |
|
|
Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
1 |
2,500 |
by dgront Mon, 2014-04-21 06:47 |
|
|
Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
2,510 |
by chelsell Wed, 2014-10-08 12:25 |
|
|
where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,513 |
by lchen Mon, 2014-04-21 06:47 |
|
|
Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,518 |
by jharamesh Mon, 2014-11-03 12:50 |
|
|
How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
2,531 |
by rmoretti Thu, 2018-06-28 12:44 |
|
|
SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
2,537 |
by rmoretti Mon, 2015-05-25 11:49 |
|
|
How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
2,538 |
by rmoretti Sat, 2015-07-11 13:38 |
|
|
ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
2,538 |
by ahonegger Fri, 2014-06-06 09:31 |
|
|
How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
1 |
2,551 |
by lanselibai Wed, 2015-01-21 02:40 |
|
|
Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
2,554 |
by rmoretti Fri, 2018-11-23 11:23 |
|
|
Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
2,562 |
by rmoretti Mon, 2014-04-21 06:48 |
|
|
"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
2,563 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
|
|
Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
2,564 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
2,566 |
by rlwoltz Mon, 2014-04-21 06:47 |
|
|
How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
2,569 |
by rmoretti Tue, 2017-10-10 09:58 |
|
|
Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
2,585 |
by rmoretti Fri, 2016-04-29 09:21 |
|
|
Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
2 |
2,586 |
by jadolfbr Mon, 2014-04-21 06:47 |
|
|
Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
2,587 |
by rmoretti Fri, 2015-01-02 11:45 |
|
|
loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
2,590 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
2,601 |
by MajorID Mon, 2014-04-21 06:47 |
|
|
clustering by ays » Tue, 2014-09-30 08:26 |
2 |
2,612 |
by rmoretti Mon, 2014-10-06 16:00 |
|
|
dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
2,617 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
2,621 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
|
|
Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
2,628 |
by rmoretti Thu, 2017-04-20 13:59 |
|
|
how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
2 |
2,629 |
by felipet Wed, 2014-07-02 07:26 |
|
|
Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
2,629 |
by brspurri Sat, 2017-08-26 07:08 |
|
|
Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
2,629 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
|
|
No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
2,637 |
by jrcf Fri, 2016-02-12 16:42 |
|
|
JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
2,638 |
by Wizard Sun, 2015-04-26 22:36 |
|
|
problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
2,650 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
|
|
prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
2,650 |
by sacch Mon, 2014-04-21 06:47 |
|
|
Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
2,666 |
by bjharris Sun, 2020-08-23 14:03 |
|
|
RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
2,675 |
by mark.wilson Mon, 2014-04-21 06:47 |
|
|
Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
2,677 |
by smlewis Mon, 2014-04-21 06:47 |
|
|
high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
2,685 |
by tfliu Mon, 2014-04-21 06:48 |
Log in to post new content in the forum.
