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Rosetta 3 - Applications

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Normal topic Failing Fragment libraries us Chemical shifts with Robettaa
by kalabharath » Tue, 2015-04-28 19:33
2
2,351 by kalabharath
Wed, 2015-04-29 16:21
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,363 by smlewis
Mon, 2014-04-21 06:47
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,367 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
2,367 by vmulligan
Fri, 2020-04-10 02:54
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
2,371 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
2,381 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
2,391 by smlewis
Fri, 2017-01-27 07:20
Normal topic score:weights for fixbb application in Rosetta 3.5
by tylerborrman » Tue, 2015-07-28 14:16
2
2,391 by tylerborrman
Wed, 2015-09-23 10:51
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,397 by rmoretti
Fri, 2015-01-02 09:43
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,398 by rmoretti
Mon, 2015-05-25 11:30
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,404 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
2,406 by smlewis
Mon, 2019-09-23 11:42
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,409 by nawsad
Mon, 2014-04-21 06:48
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,410 by smlewis
Mon, 2014-04-21 06:48
Normal topic KIC with fragments versus Next generation KIC
by Loki01 » Fri, 2018-09-07 05:06
3
2,412 by smlewis
Mon, 2018-09-10 11:48
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
2,417 by rmoretti
Tue, 2014-11-04 10:33
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
2,420 by rmoretti
Tue, 2017-08-22 09:03
Normal topic Ensemble docking causes segmentation fault 11
by David Weis » Mon, 2017-03-06 14:30
2
2,428 by David Weis
Mon, 2017-03-13 06:40
Normal topic Filter based on ligand_is_touching
by Swillard » Mon, 2017-09-11 19:00
3
2,433 by rmoretti
Mon, 2018-11-12 14:35
Normal topic FlexPepDock Concatenation
by cam11 » Mon, 2014-08-11 07:39
2
2,436 by cam11
Wed, 2014-08-13 10:06
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
2,437 by danpf
Tue, 2020-05-12 10:58
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
2,442 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,443 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Flexible docking using rosetta density-fitting for DNA
by helm » Thu, 2012-06-14 23:43
1
2,443 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
2,447 by staciekim
Thu, 2017-08-17 17:06
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,448 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
2,454 by rmoretti
Tue, 2020-07-14 10:54
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
2,474 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,478 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in using “loopmodel” for selective rebuilding
by sushreet » Mon, 2014-07-14 11:57
2
2,488 by sushreet
Tue, 2014-08-26 13:02
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,490 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
2,493 by smlewis
Mon, 2017-01-23 06:26
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
2,497 by renedominik
Tue, 2020-02-18 01:36
Normal topic ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly'
by smiruthi » Mon, 2011-12-12 14:27
1
2,507 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,508 by rmoretti
Mon, 2014-04-21 06:47
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,509 by rmoretti
Tue, 2014-11-04 08:53
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,514 by dantimatter
Wed, 2019-10-30 09:43
Normal topic No interface for protein - Interface Analyzer
by aloshbau » Tue, 2013-05-21 21:00
1
2,514 by jarod
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with RosettaScripts gives a ParsedProtocol exception
by brspurri » Sun, 2017-05-14 17:51
2
2,515 by brspurri
Mon, 2017-05-15 11:48
Normal topic homology modeling with threading says length mismatch between sequence and alignment
by rqliang » Thu, 2015-08-06 11:46
2
2,515 by jharamesh
Sat, 2015-08-08 19:51
Normal topic Abinitio protocol and X-Ray diffraction data
by allan.ferrari » Wed, 2015-08-12 12:49
2
2,516 by allan.ferrari
Fri, 2015-08-28 12:07
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,521 by cossio
Mon, 2015-01-19 07:14
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,521 by rmoretti
Tue, 2017-03-28 08:51
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,523 by rmoretti
Wed, 2015-03-25 11:33
Normal topic limit_cluster_size default value
by sacch » Thu, 2011-11-24 17:57
2
2,529 by sacch
Mon, 2014-04-21 06:47
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,532 by rmoretti
Mon, 2014-04-21 06:48
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,533 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,540 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu
by lanselibai » Mon, 2014-11-10 08:12
2
2,540 by lanselibai
Tue, 2014-11-11 04:42
Normal topic symmetric fixbb design with design_hpatch
by sdh_h » Sat, 2013-02-02 01:48
2
2,543 by ronj
Mon, 2014-04-21 06:47
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,550 by cossio
Fri, 2018-05-18 09:51
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
2,551 by bogac
Tue, 2017-03-07 02:11
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,552 by smlewis
Mon, 2014-04-21 06:47
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
2,553 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Filter ddg_filter reports failure!
by deepanshuiitb » Fri, 2015-02-27 18:19
2
2,554 by deepanshuiitb
Sat, 2015-02-28 19:24
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
2,561 by rmoretti
Thu, 2014-03-13 08:04
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
2,570 by shadrinams
Wed, 2018-03-14 07:46
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
2,573 by sn
Thu, 2017-04-20 21:43
Normal topic How to eliminate "NUL"s when scoring PDBs?
by lanselibai » Tue, 2014-10-14 10:04
2
2,591 by lanselibai
Fri, 2014-10-17 03:36
Normal topic Modeling more than one protein loop at the same time
by hzhekova » Mon, 2018-01-15 14:03
2
2,595 by hzhekova
Tue, 2018-01-16 10:31
Normal topic Calculate_protein_protein_ddg
by kamau » Fri, 2015-01-30 11:27
2
2,603 by deepanshuiitb
Thu, 2015-03-19 19:14
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,603 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,603 by rmoretti
Thu, 2018-06-28 12:58
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
2,605 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,608 by rmoretti
Mon, 2014-04-21 06:47
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,619 by Pernille
Wed, 2014-10-08 10:41
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,620 by smlewis
Mon, 2014-04-21 06:48
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,627 by rmoretti
Mon, 2014-08-04 14:51
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
2,627 by asbelx
Mon, 2018-06-18 22:34
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
2,629 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
2,630 by cossio
Fri, 2018-10-12 04:43
Normal topic membrane score weights
by ytao » Sat, 2012-09-08 06:56
2
2,634 by ytao
Mon, 2014-04-21 06:47
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
2,647 by franfdez
Mon, 2014-07-28 01:04
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,660 by subha
Fri, 2018-04-20 12:49
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
2,669 by mpacella
Mon, 2014-04-21 06:47
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,679 by rmoretti
Thu, 2017-02-02 09:02
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
6
2,680 by chandana
Tue, 2022-08-09 20:27
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
2,680 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,687 by Loki01
Thu, 2018-04-12 08:28
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,687 by rmoretti
Thu, 2017-08-24 11:00
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
2,689 by ajasja
Wed, 2019-05-15 15:40
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
2,693 by banshee
Mon, 2016-09-12 23:41
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,697 by mintseris
Wed, 2015-06-24 22:04
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,702 by smlewis
Mon, 2014-04-21 06:47
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,704 by rmoretti
Tue, 2016-01-05 08:35
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,706 by rmoretti
Fri, 2015-09-04 10:25
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
2,708 by ashu4487
Mon, 2018-07-16 19:24
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
2,711 by xingqing326
Tue, 2020-04-21 19:11
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
2,714 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,717 by smlewis
Wed, 2017-02-15 07:43
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,719 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
2,724 by dgront
Mon, 2014-04-21 06:47
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,727 by cossio
Tue, 2015-09-15 12:48
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,729 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,734 by lchen
Mon, 2014-04-21 06:47
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
2,734 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,738 by smlewis
Mon, 2014-05-12 08:32
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
2,746 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
2,748 by e3lm
Tue, 2021-09-14 10:02
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,755 by attesor
Tue, 2015-11-17 07:36
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