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Rosetta 3 - Applications
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,351 |
by kalabharath Wed, 2015-04-29 16:21 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,363 |
by smlewis Mon, 2014-04-21 06:47 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
1 |
2,367 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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2,367 |
by vmulligan Fri, 2020-04-10 02:54 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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2,371 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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2,381 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
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2,391 |
by smlewis Fri, 2017-01-27 07:20 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
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2,391 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,397 |
by rmoretti Fri, 2015-01-02 09:43 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,398 |
by rmoretti Mon, 2015-05-25 11:30 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
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2,404 |
by rmoretti Tue, 2018-02-06 09:47 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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2,406 |
by smlewis Mon, 2019-09-23 11:42 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,409 |
by nawsad Mon, 2014-04-21 06:48 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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2,410 |
by smlewis Mon, 2014-04-21 06:48 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
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2,412 |
by smlewis Mon, 2018-09-10 11:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,417 |
by rmoretti Tue, 2014-11-04 10:33 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
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2,420 |
by rmoretti Tue, 2017-08-22 09:03 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
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2,428 |
by David Weis Mon, 2017-03-13 06:40 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
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2,433 |
by rmoretti Mon, 2018-11-12 14:35 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
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2,436 |
by cam11 Wed, 2014-08-13 10:06 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
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2,437 |
by danpf Tue, 2020-05-12 10:58 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
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2,442 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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2,443 |
by cdbahl Sat, 2017-02-18 13:02 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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2,443 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
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2,447 |
by staciekim Thu, 2017-08-17 17:06 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
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2,448 |
by rmoretti Mon, 2014-04-21 06:48 |
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Translate mover chain X doesnot exist. by surya » Thu, 2020-07-09 08:36 |
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2,454 |
by rmoretti Tue, 2020-07-14 10:54 |
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Warnings during relax by cossio » Thu, 2018-10-11 14:42 |
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2,474 |
by rmoretti Mon, 2019-11-04 13:56 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,478 |
by smlewis Mon, 2014-04-21 06:47 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,488 |
by sushreet Tue, 2014-08-26 13:02 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
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2,490 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
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2,493 |
by smlewis Mon, 2017-01-23 06:26 |
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Docking to TM protein plus lipid bilayer by renedominik » Tue, 2019-03-12 06:58 |
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2,497 |
by renedominik Tue, 2020-02-18 01:36 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,507 |
by rmoretti Mon, 2014-04-21 06:47 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
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2,508 |
by rmoretti Mon, 2014-04-21 06:47 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,509 |
by rmoretti Tue, 2014-11-04 08:53 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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2,514 |
by dantimatter Wed, 2019-10-30 09:43 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,514 |
by jarod Mon, 2014-04-21 06:47 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
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2,515 |
by brspurri Mon, 2017-05-15 11:48 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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2,515 |
by jharamesh Sat, 2015-08-08 19:51 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,516 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,521 |
by cossio Mon, 2015-01-19 07:14 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,521 |
by rmoretti Tue, 2017-03-28 08:51 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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2,523 |
by rmoretti Wed, 2015-03-25 11:33 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
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2,529 |
by sacch Mon, 2014-04-21 06:47 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,532 |
by rmoretti Mon, 2014-04-21 06:48 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,533 |
by rmoretti Mon, 2014-04-21 06:48 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,540 |
by rmoretti Mon, 2015-01-26 12:15 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,540 |
by lanselibai Tue, 2014-11-11 04:42 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,543 |
by ronj Mon, 2014-04-21 06:47 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
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2,550 |
by cossio Fri, 2018-05-18 09:51 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,551 |
by bogac Tue, 2017-03-07 02:11 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
1 |
2,552 |
by smlewis Mon, 2014-04-21 06:47 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
2,553 |
by rmoretti Wed, 2018-03-07 08:44 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,554 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,561 |
by rmoretti Thu, 2014-03-13 08:04 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
2 |
2,570 |
by shadrinams Wed, 2018-03-14 07:46 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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2,573 |
by sn Thu, 2017-04-20 21:43 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
2,591 |
by lanselibai Fri, 2014-10-17 03:36 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
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2,595 |
by hzhekova Tue, 2018-01-16 10:31 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
2,603 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,603 |
by smlewis Mon, 2014-04-21 06:47 |
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The question of ligand docking with constraints by asbelx » Mon, 2018-06-11 09:39 |
3 |
2,603 |
by rmoretti Thu, 2018-06-28 12:58 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,605 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
2,608 |
by rmoretti Mon, 2014-04-21 06:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,619 |
by Pernille Wed, 2014-10-08 10:41 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,620 |
by smlewis Mon, 2014-04-21 06:48 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
2,627 |
by rmoretti Mon, 2014-08-04 14:51 |
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The question about ligand score function by asbelx » Sun, 2018-06-17 02:07 |
2 |
2,627 |
by asbelx Mon, 2018-06-18 22:34 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
2,629 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
2,630 |
by cossio Fri, 2018-10-12 04:43 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,634 |
by ytao Mon, 2014-04-21 06:47 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
2,647 |
by franfdez Mon, 2014-07-28 01:04 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
2,660 |
by subha Fri, 2018-04-20 12:49 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
2,669 |
by mpacella Mon, 2014-04-21 06:47 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
2,679 |
by rmoretti Thu, 2017-02-02 09:02 |
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How to choose designed antibody by Sunyp_IM » Wed, 2020-06-24 10:06 |
6 |
2,680 |
by chandana Tue, 2022-08-09 20:27 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
1 |
2,680 |
by jadolfbr Mon, 2014-10-20 13:42 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
2,687 |
by Loki01 Thu, 2018-04-12 08:28 |
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Allow region of protein to move in a certain direction by sn » Wed, 2017-08-23 17:07 |
3 |
2,687 |
by rmoretti Thu, 2017-08-24 11:00 |
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protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
2,689 |
by ajasja Wed, 2019-05-15 15:40 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
2,693 |
by banshee Mon, 2016-09-12 23:41 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
2,697 |
by mintseris Wed, 2015-06-24 22:04 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,702 |
by smlewis Mon, 2014-04-21 06:47 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
2,704 |
by rmoretti Tue, 2016-01-05 08:35 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
2,706 |
by rmoretti Fri, 2015-09-04 10:25 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,708 |
by ashu4487 Mon, 2018-07-16 19:24 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
2,711 |
by xingqing326 Tue, 2020-04-21 19:11 |
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How tu use Delta filter's relax_mover by pocin » Sun, 2017-02-19 05:21 |
3 |
2,714 |
by rmoretti Wed, 2017-03-01 13:10 |
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Docking membrane ions and water by jrcf » Tue, 2017-02-07 15:47 |
3 |
2,717 |
by smlewis Wed, 2017-02-15 07:43 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,719 |
by jharamesh Mon, 2014-11-03 12:50 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
1 |
2,724 |
by dgront Mon, 2014-04-21 06:47 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
2,727 |
by cossio Tue, 2015-09-15 12:48 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
2,729 |
by syoifczeri Tue, 2015-03-10 23:08 |
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where to look for positive sign for solution in mr-rosetta3.4? by lchen » Tue, 2012-07-10 09:38 |
2 |
2,734 |
by lchen Mon, 2014-04-21 06:47 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
2,734 |
by ladimafakher Thu, 2018-11-01 03:47 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
2,738 |
by smlewis Mon, 2014-05-12 08:32 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
2,746 |
by rmoretti Mon, 2014-04-21 06:48 |
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Missing atoms and cannot find atom pose when refining ligand position with EM density by BuddySphinx » Mon, 2018-12-31 16:22 |
2 |
2,748 |
by e3lm Tue, 2021-09-14 10:02 |
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,755 |
by attesor Tue, 2015-11-17 07:36 |
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