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Rosetta 3 - Applications
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
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2,566 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,567 |
by jrcf Mon, 2016-02-15 17:59 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,570 |
by ays Tue, 2014-09-30 08:31 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
1 |
2,580 |
by smlewis Mon, 2014-04-21 06:47 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,582 |
by rmoretti Mon, 2014-04-21 06:48 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
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2,590 |
by mdidonato Wed, 2014-06-04 14:55 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,591 |
by rmoretti Fri, 2014-08-15 08:06 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,602 |
by rmoretti Mon, 2014-04-21 06:48 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
1 |
2,607 |
by smlewis Mon, 2014-04-21 06:47 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,608 |
by eyong123 Wed, 2015-04-22 11:33 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
1 |
2,608 |
by smlewis Mon, 2014-04-21 06:48 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,611 |
by felipet Thu, 2014-07-17 10:13 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,617 |
by rmoretti Fri, 2016-04-29 08:26 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
2,621 |
by smlewis Wed, 2021-12-08 13:02 |
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Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
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2,623 |
by attesor Mon, 2015-10-26 09:01 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,624 |
by nawsad Mon, 2014-04-21 06:48 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
2 |
2,624 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
4 |
2,629 |
by danpf Fri, 2020-02-21 18:32 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,635 |
by shrutikhare Fri, 2014-04-18 23:11 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,643 |
by rmoretti Mon, 2015-05-25 11:30 |
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Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,649 |
by smlewis Wed, 2018-12-12 16:51 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,650 |
by kalabharath Wed, 2015-04-29 16:21 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,656 |
by rmoretti Mon, 2014-04-21 06:48 |
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Trouble running Enzyme Design application by danaitop » Thu, 2016-08-11 13:34 |
2 |
2,661 |
by rmoretti Mon, 2016-09-05 11:10 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,682 |
by cossio Mon, 2015-01-19 07:14 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
2,683 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,683 |
by smlewis Mon, 2014-04-21 06:47 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
2,690 |
by ctqwong Thu, 2021-03-18 02:04 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,698 |
by cdbahl Sat, 2017-02-18 13:02 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,700 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,700 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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2,712 |
by brspurri Wed, 2020-06-03 13:20 |
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mpirun docking_protocol by NanB » Mon, 2020-08-03 11:38 |
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2,717 |
by ssrb Fri, 2020-08-14 09:18 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,725 |
by rmoretti Mon, 2014-04-21 06:47 |
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New CSRosetta toolbox by sn » Mon, 2017-04-24 12:42 |
3 |
2,729 |
by rmoretti Tue, 2017-04-25 06:41 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,733 |
by rmoretti Fri, 2015-01-02 09:43 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,736 |
by rmoretti Mon, 2014-04-21 06:47 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,737 |
by cam11 Wed, 2014-08-13 10:06 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,739 |
by rmoretti Tue, 2014-11-04 10:33 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
5 |
2,742 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,748 |
by rmoretti Mon, 2014-04-21 06:48 |
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Negative Design by rbjacob » Thu, 2018-10-11 09:18 |
3 |
2,750 |
by smlewis Mon, 2018-10-15 08:42 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
1 |
2,753 |
by rmoretti Tue, 2014-11-04 08:53 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
1 |
2,754 |
by jarod Mon, 2014-04-21 06:47 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,755 |
by rmoretti Mon, 2014-04-21 06:47 |
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antibody_numbering_converter cannot recognize the IMGT scheme by cryosky » Sat, 2020-02-29 23:12 |
4 |
2,756 |
by jadolfbr Sun, 2020-03-01 14:54 |
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St13runtime_error in Rosetta ligand docking by syntekabio2019 » Thu, 2023-02-09 18:18 |
2 |
2,766 |
by syntekabio2019 Sun, 2023-02-19 18:39 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
1 |
2,774 |
by smlewis Mon, 2014-04-21 06:47 |
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Ensemble docking causes segmentation fault 11 by David Weis » Mon, 2017-03-06 14:30 |
2 |
2,775 |
by David Weis Mon, 2017-03-13 06:40 |
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Can rosetta generate a centroid model based on the rna sequence? by yels » Fri, 2021-03-26 04:06 |
7 |
2,786 |
by yels Wed, 2021-03-31 18:31 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,787 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
2 |
2,789 |
by sushreet Tue, 2014-08-26 13:02 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,790 |
by jharamesh Sat, 2015-08-08 19:51 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,790 |
by rmoretti Tue, 2018-02-06 09:47 |
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KIC with fragments versus Next generation KIC by Loki01 » Fri, 2018-09-07 05:06 |
3 |
2,794 |
by smlewis Mon, 2018-09-10 11:48 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
2,808 |
by ziruiw Fri, 2021-04-30 12:01 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
1 |
2,809 |
by rmoretti Mon, 2015-01-26 12:15 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
4 |
2,811 |
by danpf Fri, 2019-09-06 11:29 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
2 |
2,812 |
by lanselibai Tue, 2014-11-11 04:42 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
2,813 |
by everyday847 Wed, 2020-05-20 08:52 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,813 |
by rmoretti Tue, 2017-08-22 09:03 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,814 |
by rmoretti Wed, 2015-03-25 11:33 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,815 |
by smlewis Mon, 2014-04-21 06:48 |
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limit_cluster_size default value by sacch » Thu, 2011-11-24 17:57 |
2 |
2,825 |
by sacch Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,825 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
5 |
2,831 |
by Astghik Thu, 2020-10-15 00:48 |
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Options for Enzdes RosettaScripts by joeg » Wed, 2014-03-12 09:28 |
1 |
2,831 |
by rmoretti Thu, 2014-03-13 08:04 |
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symmetric fixbb design with design_hpatch by sdh_h » Sat, 2013-02-02 01:48 |
2 |
2,832 |
by ronj Mon, 2014-04-21 06:47 |
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Packstat score in InterfaceAnalyzer by Vedasheersh » Fri, 2017-01-27 06:21 |
2 |
2,837 |
by smlewis Fri, 2017-01-27 07:20 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
2,839 |
by AJVincelli Sun, 2018-11-25 11:29 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,855 |
by rmoretti Mon, 2018-11-12 14:35 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
2,855 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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Multistate design issues with -run:msd_job_dist option and MSDMover by elaine.thai » Wed, 2020-05-13 18:07 |
2 |
2,858 |
by Jane_002 Thu, 2023-08-03 19:47 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
5 |
2,877 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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Ligand params file proton_chi parameters by staciekim » Thu, 2017-08-17 14:50 |
2 |
2,878 |
by staciekim Thu, 2017-08-17 17:06 |
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membrane score weights by ytao » Sat, 2012-09-08 06:56 |
2 |
2,884 |
by ytao Mon, 2014-04-21 06:47 |
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Can I believe the antibody design result? by Sunyp_IM » Mon, 2020-11-30 03:29 |
6 |
2,885 |
by jadolfbr Sun, 2020-12-06 17:41 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
2,885 |
by rmoretti Mon, 2014-04-21 06:47 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
2,886 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
2,890 |
by rmoretti Tue, 2017-03-28 08:51 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
2 |
2,891 |
by lanselibai Fri, 2014-10-17 03:36 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
1 |
2,894 |
by rmoretti Mon, 2014-08-04 14:51 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
4 |
2,896 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,896 |
by smlewis Mon, 2017-01-23 06:26 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
2,909 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Ligand Docking with RosettaScripts gives a ParsedProtocol exception by brspurri » Sun, 2017-05-14 17:51 |
2 |
2,914 |
by brspurri Mon, 2017-05-15 11:48 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
5 |
2,918 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,923 |
by Pernille Wed, 2014-10-08 10:41 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
2,925 |
by mpacella Mon, 2014-04-21 06:47 |
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Modeling more than one protein loop at the same time by hzhekova » Mon, 2018-01-15 14:03 |
2 |
2,925 |
by hzhekova Tue, 2018-01-16 10:31 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,935 |
by jharamesh Mon, 2014-11-03 12:50 |
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Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
2,937 |
by johnnytam100 Tue, 2019-05-21 20:48 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,947 |
by smlewis Mon, 2014-04-21 06:47 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
2 |
2,949 |
by franfdez Mon, 2014-07-28 01:04 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
2,957 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
5 |
2,972 |
by vmulligan Fri, 2020-04-10 02:54 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,973 |
by Payne Tue, 2022-06-21 07:25 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
2,977 |
by smlewis Mon, 2019-09-23 11:42 |
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KeyError: 'subject-id' in antibody modelling by bogac » Mon, 2017-03-06 02:00 |
2 |
2,980 |
by bogac Tue, 2017-03-07 02:11 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
1 |
2,980 |
by jadolfbr Mon, 2014-10-20 13:42 |
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