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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort ascending Last post
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,736 by smlewis
Mon, 2014-04-21 06:47
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
1,725 by smlewis
Mon, 2014-07-07 11:58
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
1,719 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
1,718 by rmoretti
Mon, 2015-02-09 12:33
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
1,713 by xingqing326
Tue, 2020-04-21 19:11
Normal topic How to scan double mutations in RosettaScripts?
by msardejani » Mon, 2016-12-12 16:52
2
1,698 by msardejani
Mon, 2016-12-12 17:48
Normal topic Negative Design
by rbjacob » Thu, 2018-10-11 09:18
3
1,687 by smlewis
Mon, 2018-10-15 08:42
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
1,685 by smlewis
Mon, 2019-09-23 11:42
Normal topic -loops:fa_input not found in command line top-level context
by swarekwood » Thu, 2017-08-24 03:15
2
1,684 by swarekwood
Fri, 2017-08-25 05:08
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
1,683 by rmoretti
Mon, 2015-05-25 12:30
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
1,682 by rmoretti
Wed, 2017-01-11 13:00
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,682 by rmoretti
Fri, 2016-10-14 08:42
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
1,678 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,674 by rmoretti
Fri, 2015-10-02 12:30
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
1,673 by rmoretti
Mon, 2014-05-26 09:29
Normal topic How to restart RASREC run
by aep » Fri, 2016-07-01 04:39
2
1,667 by aep
Fri, 2016-07-01 06:54
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
1,660 by rmoretti
Fri, 2020-07-10 09:59
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
1,647 by rmoretti
Sat, 2015-06-20 20:07
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
1,647 by rmoretti
Fri, 2016-06-17 10:15
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
1,645 by rmoretti
Sat, 2015-10-31 08:57
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
1,641 by rmoretti
Tue, 2020-07-14 10:54
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
1,636 by danpf
Tue, 2020-05-12 10:58
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
1,636 by rmoretti
Wed, 2016-11-30 07:46
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
1,635 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,631 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
1,629 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Including ab-initio predicted model in fragment library generation
by ashu4487 » Thu, 2016-12-08 17:49
2
1,629 by ashu4487
Sun, 2016-12-11 19:03
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
1,625 by rmoretti
Tue, 2015-11-24 16:16
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
1,622 by rmoretti
Mon, 2017-03-13 08:01
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
1,621 by esozdemir
Thu, 2019-06-13 12:19
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
1,618 by smlewis
Tue, 2017-02-21 14:10
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
1,609 by everyday847
Sun, 2014-09-28 21:16
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
1,603 by danpf
Fri, 2019-09-06 11:29
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
1,601 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
1,595 by rmoretti
Fri, 2015-07-03 14:41
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
1,585 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,579 by smlewis
Mon, 2017-02-06 20:46
Normal topic Model truncated proteins
by BuddySphinx » Wed, 2018-12-12 10:32
3
1,579 by smlewis
Wed, 2018-12-12 16:51
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,575 by rmoretti
Wed, 2016-02-24 14:39
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,575 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
1,571 by everyday847
Wed, 2020-05-20 08:52
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
1,567 by smlewis
Fri, 2018-09-14 10:34
Normal topic The problems on pdb renumbering
by Sunyp_IM » Sun, 2017-08-20 06:39
0
1,566 by Sunyp_IM
Sun, 2017-08-20 06:39
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
1,565 by rmoretti
Tue, 2014-11-18 09:10
Normal topic cluster,how to get the statistic data
by MajorID » Wed, 2011-06-08 09:20
0
1,563 by MajorID
Mon, 2014-04-21 06:47
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,562 by sgourn
Tue, 2015-08-18 18:25
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
1,559 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
1,556 by rmoretti
Tue, 2015-01-13 07:44
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
1,556 by rmoretti
Mon, 2015-05-25 12:37
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,555 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
1,550 by Pernille
Fri, 2014-06-20 00:17
Normal topic error extracting PDB from silent from AbinitioRelax with constraints
by attesor » Wed, 2017-06-14 04:15
2
1,547 by smlewis
Fri, 2017-06-16 07:35
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
1,544 by cossio
Sun, 2018-03-11 09:12
Normal topic Instructing design scripts to use noncanonical AA instead of canonical
by zcrook » Tue, 2014-11-25 10:43
1
1,538 by rmoretti
Wed, 2014-11-26 07:51
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
1,538 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
1,535 by rmoretti
Thu, 2016-06-23 10:55
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
1,524 by rmoretti
Fri, 2016-09-09 07:47
Normal topic Enzyme Design - Score File
by nwhoppe » Thu, 2016-04-07 15:11
1
1,518 by rmoretti
Fri, 2016-04-08 07:39
Normal topic SPLINE EPR_DISTANCE Constraint Error
by mmw88 » Tue, 2018-09-18 14:39
2
1,505 by rmoretti
Thu, 2018-09-20 09:19
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
1,504 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,504 by rmoretti
Thu, 2014-08-28 09:42
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
1,503 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,500 by rmoretti
Wed, 2015-09-09 12:01
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
5
1,499 by jadolfbr
Fri, 2020-07-24 07:24
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
1,495 by rmoretti
Thu, 2015-08-06 08:57
Normal topic problems with generating the params file
by dyu » Thu, 2017-09-28 13:34
2
1,495 by dyu
Thu, 2017-09-28 18:54
Normal topic Folding and Docking using Symmetry
by danielles » Wed, 2012-09-12 11:32
0
1,491 by danielles
Mon, 2014-04-21 06:47
Normal topic ERROR: Specified chain does not exist.
by ajaniharesh » Fri, 2019-04-05 11:14
2
1,487 by ajaniharesh
Tue, 2019-04-09 06:53
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,485 by rmoretti
Tue, 2016-07-12 08:56
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,480 by rmoretti
Tue, 2018-01-16 07:24
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
1,475 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
1,462 by brspurri
Wed, 2020-06-03 13:20
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
1,457 by dnamkr
Thu, 2019-12-26 10:22
Normal topic How to make new VALL database?
by Danielsebas » Sun, 2019-09-08 02:16
2
1,457 by Danielsebas
Wed, 2019-09-11 00:44
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
1,444 by danpf
Fri, 2020-02-21 18:32
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,441 by rmoretti
Tue, 2018-01-30 07:51
Normal topic antibody_numbering_converter cannot recognize the IMGT scheme
by cryosky » Sat, 2020-02-29 23:12
4
1,439 by jadolfbr
Sun, 2020-03-01 14:54
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
1,439 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,435 by smlewis
Mon, 2015-06-08 06:35
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,426 by rmoretti
Fri, 2015-01-02 11:06
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
1,421 by rmoretti
Thu, 2017-04-27 07:10
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
1,420 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
1,416 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,413 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Can't find RosettaRemodel in Rosetta 3.4
by petrikigor » Mon, 2012-12-03 13:56
0
1,410 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cartfrag_overlap error while running hybridize protocol
by sn » Thu, 2017-12-21 10:24
2
1,387 by dnamkr
Mon, 2019-12-30 11:43
Normal topic how to make "static" built binaries use multiple cpus like "mpi"?
by Danielsebas » Wed, 2019-09-18 06:41
3
1,386 by rmoretti
Wed, 2019-09-18 10:21
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,382 by David Hoover
Mon, 2014-04-21 06:47
Normal topic A problem with "make_fragments.pl" script dependencies
by Corvin » Fri, 2019-08-16 04:30
2
1,380 by Corvin
Tue, 2019-08-27 00:46
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
1,380 by rmoretti
Fri, 2016-06-17 10:24
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
1,380 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,380 by rmoretti
Tue, 2015-11-10 11:10
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,362 by Derek
Wed, 2016-04-27 01:31
Normal topic Chemically bound ligand connection error
by tsztain » Tue, 2019-01-01 18:40
2
1,361 by tsztain
Mon, 2019-02-18 09:55
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
1,360 by Astghik
Thu, 2020-10-15 00:48
Normal topic How to correctly incorporate constraint information into ab initio structure prediction?
by johnnytam100 » Tue, 2019-02-19 03:13
2
1,358 by johnnytam100
Fri, 2019-03-01 01:36
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
1,356 by smlewis
Thu, 2015-10-22 08:04
Normal topic How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior )
by asbelx » Sat, 2019-06-08 00:07
3
1,348 by happycaapi
Tue, 2021-06-29 15:35
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
1,342 by rmoretti
Fri, 2018-11-23 07:59
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
1,339 by rmoretti
Mon, 2017-07-03 09:17
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