You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
20 |
16,918 |
by rmoretti Wed, 2018-11-21 15:45 |
|
|
AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
1 |
2,182 |
by rmoretti Fri, 2018-11-23 07:59 |
|
|
Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,903 |
by rmoretti Fri, 2018-11-23 11:23 |
|
|
Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
3,475 |
by AJVincelli Sun, 2018-11-25 11:29 |
|
|
SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
8 |
7,533 |
by dfcoelho Wed, 2018-11-28 08:07 |
|
|
docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
1,992 |
by rmoretti Tue, 2018-12-04 08:55 |
|
|
Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
0 |
1,013 |
by sizhang Wed, 2018-12-05 15:22 |
|
|
ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
1 |
2,171 |
by jeliazkov Fri, 2018-12-07 12:51 |
|
|
molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
5 |
5,150 |
by tsztain Tue, 2018-12-11 13:41 |
|
|
Model truncated proteins by BuddySphinx » Wed, 2018-12-12 10:32 |
3 |
2,923 |
by smlewis Wed, 2018-12-12 16:51 |
|
|
rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
0 |
1,213 |
by dhirajks Thu, 2018-12-13 19:34 |
|
|
Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
2,154 |
by BuddySphinx Sun, 2018-12-30 16:49 |
|
|
Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
2,359 |
by tsztain Mon, 2019-02-18 09:55 |
|
|
How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
2 |
2,296 |
by johnnytam100 Fri, 2019-03-01 01:36 |
|
|
Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
3,616 |
by johnnytam100 Sun, 2019-03-03 23:42 |
|
|
Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
8 |
5,387 |
by purvi24 Mon, 2019-03-11 06:43 |
|
|
help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
0 |
1,010 |
by engand93 Wed, 2019-03-27 02:43 |
|
|
Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,991 |
by rmoretti Fri, 2019-03-29 09:30 |
|
|
hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
1 |
1,523 |
by rmoretti Fri, 2019-03-29 09:45 |
|
|
Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
1 |
1,735 |
by rmoretti Fri, 2019-03-29 09:58 |
|
|
Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
3,356 |
by rmoretti Fri, 2019-03-29 12:25 |
|
|
reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
2,062 |
by everyday847 Fri, 2019-03-29 13:13 |
|
|
Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
1 |
1,616 |
by rmoretti Fri, 2019-03-29 13:21 |
|
|
Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
3,666 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
|
|
Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
6,250 |
by ajaniharesh Thu, 2019-04-04 07:07 |
|
|
Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
1 |
1,631 |
by rmoretti Fri, 2019-04-05 00:18 |
|
|
ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
2,738 |
by ajaniharesh Tue, 2019-04-09 06:53 |
|
|
How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
4 |
3,203 |
by johnnytam100 Wed, 2019-04-10 02:48 |
|
|
input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
1 |
1,518 |
by rmoretti Tue, 2019-04-16 11:07 |
|
|
Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
1 |
1,786 |
by nannemdp Thu, 2019-04-25 07:58 |
|
|
Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
3,686 |
by johnnytam100 Thu, 2019-04-25 19:28 |
|
|
missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
1,894 |
by rmoretti Fri, 2019-04-26 12:13 |
|
|
Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,707 |
by rmoretti Thu, 2019-05-09 15:40 |
|
|
loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
1,605 |
by jadolfbr Fri, 2019-05-10 07:53 |
|
|
protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,627 |
by ajasja Wed, 2019-05-15 15:40 |
|
|
Behavior of nstruct by johnnytam100 » Wed, 2019-05-15 22:22 |
3 |
3,266 |
by johnnytam100 Tue, 2019-05-21 20:48 |
|
|
Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
2,289 |
by johnnytam100 Tue, 2019-05-21 22:33 |
|
|
Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
1 |
1,641 |
by johnnytam100 Thu, 2019-05-23 20:52 |
|
|
protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
2,193 |
by Negarsardar Thu, 2019-05-30 23:46 |
|
|
SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
7,011 |
by zhangying1990 Tue, 2019-06-04 18:04 |
|
|
Write error during saving of PDB-file after working with it in the Rosetta through Unix terminal by Corvin » Thu, 2019-04-25 01:20 |
2 |
2,359 |
by Corvin Wed, 2019-06-12 00:04 |
|
|
RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
2,716 |
by esozdemir Thu, 2019-06-13 12:19 |
|
|
AddHelixSequenceConstraints Mover by Negarsardar » Thu, 2019-05-30 03:17 |
2 |
1,887 |
by vmulligan Thu, 2019-06-13 14:59 |
|
|
AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
1 |
1,479 |
by vmulligan Thu, 2019-06-13 15:01 |
|
|
VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
1 |
1,800 |
by jeliazkov Mon, 2019-06-17 06:03 |
|
|
Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
1,720 |
by rmoretti Mon, 2019-06-24 13:43 |
|
|
Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
1 |
1,950 |
by rmoretti Mon, 2019-06-24 13:46 |
|
|
Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
1 |
1,562 |
by rmoretti Mon, 2019-06-24 14:39 |
|
|
The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
1 |
1,480 |
by rmoretti Mon, 2019-06-24 14:42 |
|
|
Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
1,785 |
by rmoretti Mon, 2019-06-24 15:19 |
|
|
Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,995 |
by orionshih Wed, 2019-06-26 03:54 |
|
|
Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
2,485 |
by gszwabowski Wed, 2019-06-26 10:25 |
|
|
De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
2,091 |
by BuddySphinx Tue, 2019-07-02 12:03 |
|
|
Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
4,207 |
by rmoretti Tue, 2019-07-09 10:13 |
|
|
Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
1 |
2,248 |
by rmoretti Wed, 2019-07-10 09:22 |
|
|
protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
1 |
1,514 |
by rmoretti Wed, 2019-07-10 09:24 |
|
|
is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
1 |
2,037 |
by rmoretti Wed, 2019-07-10 09:47 |
|
|
Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
1 |
1,649 |
by rmoretti Wed, 2019-07-10 10:10 |
|
|
RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
4,256 |
by Yero Thu, 2019-07-18 01:39 |
|
|
InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
6,945 |
by mxp Mon, 2019-08-12 18:42 |
|
|
new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
998 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
|
|
Does it make sense if I do backrub after sequence design? by johnnytam100 » Thu, 2019-08-15 05:15 |
3 |
2,369 |
by johnnytam100 Fri, 2019-08-16 00:20 |
|
|
How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
1 |
1,757 |
by JackMaguire Fri, 2019-08-16 07:41 |
|
|
RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
984 |
by daniloboskovic Fri, 2019-08-16 11:17 |
|
|
Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
1 |
1,442 |
by everyday847 Fri, 2019-08-23 04:08 |
|
|
ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
1 |
1,844 |
by rmoretti Sun, 2019-08-25 19:15 |
|
|
how to run ala_scan.xml by xinmiaohe » Mon, 2019-08-26 09:38 |
0 |
1,121 |
by xinmiaohe Mon, 2019-08-26 09:38 |
|
|
Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
1 |
1,424 |
by rmoretti Mon, 2019-08-26 12:03 |
|
|
PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
1 |
1,411 |
by rmoretti Mon, 2019-08-26 12:17 |
|
|
"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
1,658 |
by rmoretti Mon, 2019-08-26 12:49 |
|
|
RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
1 |
1,903 |
by rmoretti Mon, 2019-08-26 12:57 |
|
|
can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
1 |
1,738 |
by xinmiaohe Mon, 2019-08-26 18:16 |
|
|
A problem with "make_fragments.pl" script dependencies by Corvin » Fri, 2019-08-16 04:30 |
2 |
2,534 |
by Corvin Tue, 2019-08-27 00:46 |
|
|
how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
5 |
3,224 |
by xinmiaohe Tue, 2019-08-27 08:37 |
|
|
Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
2,053 |
by Danielsebas Sun, 2019-09-01 02:38 |
|
|
/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
1 |
1,418 |
by danpf Tue, 2019-09-03 10:15 |
|
|
Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
2,477 |
by Danielsebas Thu, 2019-09-05 03:35 |
|
|
ligand docking with MPI by Ruska322 » Wed, 2019-09-04 03:47 |
2 |
1,818 |
by Ruska322 Fri, 2019-09-06 07:13 |
|
|
Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
4 |
3,098 |
by danpf Fri, 2019-09-06 11:29 |
|
|
extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
1,028 |
by Ruska322 Sat, 2019-09-07 05:21 |
|
|
"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
2 |
2,077 |
by Danielsebas Sun, 2019-09-08 02:08 |
|
|
How to make new VALL database? by Danielsebas » Sun, 2019-09-08 02:16 |
2 |
2,567 |
by Danielsebas Wed, 2019-09-11 00:44 |
|
|
"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
2,324 |
by danpf Mon, 2019-09-16 09:51 |
|
|
How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
1 |
1,467 |
by smlewis Mon, 2019-09-16 12:22 |
|
|
Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,873 |
by Danielsebas Tue, 2019-09-17 01:03 |
|
|
how to make "static" built binaries use multiple cpus like "mpi"? by Danielsebas » Wed, 2019-09-18 06:41 |
3 |
2,677 |
by rmoretti Wed, 2019-09-18 10:21 |
|
|
Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
1 |
1,511 |
by rmoretti Wed, 2019-09-18 10:36 |
|
|
Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
1 |
1,499 |
by jadolfbr Thu, 2019-09-19 08:53 |
|
|
antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,980 |
by mxp Mon, 2019-09-23 01:40 |
|
|
Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
3,275 |
by smlewis Mon, 2019-09-23 11:42 |
|
|
how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
1 |
1,633 |
by smlewis Tue, 2019-09-24 12:43 |
|
|
Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
4 |
2,624 |
by maruhuang Thu, 2019-09-26 18:52 |
|
|
Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
1,306 |
by smlewis Fri, 2019-09-27 11:54 |
|
|
how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
5 |
5,239 |
by xinmiaohe Fri, 2019-10-04 08:54 |
|
|
Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
0 |
923 |
by CATarr Wed, 2019-10-09 19:05 |
|
|
"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
2,270 |
by Corvin Thu, 2019-10-10 01:12 |
|
|
"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
1 |
1,566 |
by danpf Thu, 2019-10-10 09:55 |
|
|
Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
6 |
6,296 |
by Corvin Tue, 2019-10-15 01:12 |
|
|
denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
1 |
1,490 |
by danpf Wed, 2019-10-16 13:03 |
|
|
change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
1,862 |
by hdelrisco Fri, 2019-10-18 17:16 |
Log in to post new content in the forum.
