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Rosetta 3 - Applications
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
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6,034 |
by rmoretti Mon, 2015-10-12 15:10 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,644 |
by jrcf Mon, 2015-10-05 21:32 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,952 |
by rmoretti Fri, 2015-10-02 12:30 |
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-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
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15,233 |
by rmoretti Mon, 2015-09-28 15:00 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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4,558 |
by tylerborrman Mon, 2015-09-28 09:30 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
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2,393 |
by tylerborrman Wed, 2015-09-23 10:51 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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3,361 |
by jrcf Mon, 2015-09-21 11:10 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
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3,166 |
by rmoretti Thu, 2015-09-17 12:47 |
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Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
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2,729 |
by cossio Tue, 2015-09-15 12:48 |
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How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
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11,745 |
by rmoretti Fri, 2015-09-11 13:27 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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2,052 |
by jadolfbr Wed, 2015-09-09 12:35 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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4,357 |
by rmoretti Wed, 2015-09-09 12:08 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,790 |
by rmoretti Wed, 2015-09-09 12:01 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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2,706 |
by rmoretti Fri, 2015-09-04 10:25 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
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3,876 |
by jadolfbr Thu, 2015-09-03 16:18 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
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7,169 |
by rmoretti Wed, 2015-09-02 12:43 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
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3,669 |
by rmoretti Wed, 2015-09-02 12:33 |
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Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
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2,519 |
by allan.ferrari Fri, 2015-08-28 12:07 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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1,892 |
by sgourn Tue, 2015-08-18 18:25 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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6,023 |
by rmoretti Tue, 2015-08-18 16:47 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,783 |
by bernhardcl Tue, 2015-08-11 09:11 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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2,517 |
by jharamesh Sat, 2015-08-08 19:51 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,774 |
by rmoretti Thu, 2015-08-06 08:57 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
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2,157 |
by rmoretti Tue, 2015-07-14 14:59 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
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2,781 |
by rmoretti Sat, 2015-07-11 13:38 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
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1,891 |
by rmoretti Fri, 2015-07-03 14:41 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
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6,304 |
by eyong123 Mon, 2015-06-29 04:44 |
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docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
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2,699 |
by mintseris Wed, 2015-06-24 22:04 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
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3,631 |
by beowulfey Tue, 2015-06-23 16:10 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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1,959 |
by rmoretti Sat, 2015-06-20 20:07 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
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3,393 |
by rmoretti Fri, 2015-06-19 13:53 |
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Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
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7,475 |
by protos_heis Mon, 2015-06-08 07:00 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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1,739 |
by smlewis Mon, 2015-06-08 06:35 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
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3,245 |
by mtyras Mon, 2015-06-08 03:18 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
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3,193 |
by chelsell Wed, 2015-05-27 14:36 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
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1,855 |
by rmoretti Mon, 2015-05-25 12:37 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,990 |
by rmoretti Mon, 2015-05-25 12:30 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
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2,789 |
by rmoretti Mon, 2015-05-25 11:49 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,399 |
by rmoretti Mon, 2015-05-25 11:30 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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4,769 |
by rmoretti Thu, 2015-04-30 16:46 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
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2,355 |
by kalabharath Wed, 2015-04-29 16:21 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,435 |
by shaunmk Mon, 2015-04-27 02:33 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
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2,920 |
by Wizard Sun, 2015-04-26 22:36 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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5,325 |
by rmoretti Fri, 2015-04-24 12:02 |
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Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
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2,319 |
by eyong123 Wed, 2015-04-22 11:33 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
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3,388 |
by dswhit Tue, 2015-04-21 10:14 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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6,018 |
by rmoretti Thu, 2015-04-16 11:23 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
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3,302 |
by rmoretti Thu, 2015-04-16 10:38 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,395 |
by jennifer Wed, 2015-04-08 05:29 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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5,859 |
by jadolfbr Tue, 2015-04-07 10:50 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
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6,399 |
by rmoretti Tue, 2015-03-31 08:56 |
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Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
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3,904 |
by rmoretti Tue, 2015-03-31 08:20 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
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3,087 |
by jennifer Fri, 2015-03-27 05:56 |
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Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
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2,212 |
by rmoretti Wed, 2015-03-25 12:39 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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2,525 |
by rmoretti Wed, 2015-03-25 11:33 |
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Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
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2,605 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,731 |
by syoifczeri Tue, 2015-03-10 23:08 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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5,550 |
by lanselibai Sun, 2015-03-01 15:00 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
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2,556 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
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3,451 |
by lanselibai Tue, 2015-02-24 02:36 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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5,042 |
by felipet Wed, 2015-02-11 05:13 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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2,010 |
by rmoretti Mon, 2015-02-09 12:33 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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4,479 |
by rmoretti Mon, 2015-02-09 12:04 |
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minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
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2,026 |
by lanselibai Thu, 2015-01-29 00:50 |
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Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
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17,970 |
by masterofpuppets Tue, 2015-01-27 04:26 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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4,402 |
by attesor Tue, 2015-01-27 02:20 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,541 |
by rmoretti Mon, 2015-01-26 12:15 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,799 |
by lanselibai Wed, 2015-01-21 02:40 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,521 |
by cossio Mon, 2015-01-19 07:14 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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4,195 |
by cossio Mon, 2015-01-19 07:10 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,198 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,301 |
by lanselibai Sat, 2015-01-17 07:57 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
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3,145 |
by lanselibai Tue, 2015-01-13 14:25 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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1,820 |
by rmoretti Tue, 2015-01-13 07:44 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,430 |
by lanselibai Sun, 2015-01-11 10:50 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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9,696 |
by lanselibai Sat, 2015-01-03 08:18 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
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2,801 |
by rmoretti Fri, 2015-01-02 11:45 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
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1,688 |
by rmoretti Fri, 2015-01-02 11:06 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
2 |
2,399 |
by rmoretti Fri, 2015-01-02 09:43 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,176 |
by yigallah Mon, 2014-12-15 08:46 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
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24,184 |
by jfeuva Tue, 2014-12-09 14:49 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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2,225 |
by rmoretti Wed, 2014-12-03 19:07 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,169 |
by fred Wed, 2014-12-03 12:28 |
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Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
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21,363 |
by lanselibai Tue, 2014-12-02 09:46 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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6,173 |
by lanselibai Tue, 2014-12-02 09:43 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
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3,256 |
by max Thu, 2014-11-27 02:56 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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1,815 |
by rmoretti Wed, 2014-11-26 07:51 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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4,451 |
by zcrook Tue, 2014-11-25 10:27 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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5,355 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
5 |
5,302 |
by brianmlee Mon, 2014-11-24 19:40 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
6 |
5,149 |
by rmoretti Thu, 2014-11-20 10:46 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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4,726 |
by lanselibai Thu, 2014-11-20 02:15 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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4,572 |
by AmelieH Wed, 2014-11-19 11:26 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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1,872 |
by rmoretti Tue, 2014-11-18 09:10 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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6,721 |
by lanselibai Wed, 2014-11-12 11:17 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
6 |
5,249 |
by lanselibai Tue, 2014-11-11 15:28 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,543 |
by lanselibai Tue, 2014-11-11 04:42 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
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11,924 |
by lanselibai Fri, 2014-11-07 02:06 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,417 |
by rmoretti Tue, 2014-11-04 10:33 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
7 |
6,574 |
by rmoretti Tue, 2014-11-04 10:28 |
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