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Rosetta 3 - Applications
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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1,556 |
by rmoretti Tue, 2015-01-13 07:44 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,219 |
by lanselibai Sun, 2015-01-11 10:50 |
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"ddg_monomer.linuxgccrelease" by following "High Resolution Protocol" by lanselibai » Wed, 2014-10-01 09:54 |
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8,470 |
by lanselibai Sat, 2015-01-03 08:18 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
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2,477 |
by rmoretti Fri, 2015-01-02 11:45 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
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1,426 |
by rmoretti Fri, 2015-01-02 11:06 |
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Docking with constraint by Hongtham » Sat, 2014-12-27 09:56 |
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2,022 |
by rmoretti Fri, 2015-01-02 09:43 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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993 |
by yigallah Mon, 2014-12-15 08:46 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
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23,978 |
by jfeuva Tue, 2014-12-09 14:49 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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1,899 |
by rmoretti Wed, 2014-12-03 19:07 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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991 |
by fred Wed, 2014-12-03 12:28 |
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Syntax for relax.linuxgccrelease by lanselibai » Wed, 2014-09-24 04:34 |
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18,425 |
by lanselibai Tue, 2014-12-02 09:46 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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5,198 |
by lanselibai Tue, 2014-12-02 09:43 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
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2,799 |
by max Thu, 2014-11-27 02:56 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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1,538 |
by rmoretti Wed, 2014-11-26 07:51 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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3,962 |
by zcrook Tue, 2014-11-25 10:27 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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4,663 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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4,596 |
by brianmlee Mon, 2014-11-24 19:40 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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4,382 |
by rmoretti Thu, 2014-11-20 10:46 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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4,329 |
by lanselibai Thu, 2014-11-20 02:15 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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3,871 |
by AmelieH Wed, 2014-11-19 11:26 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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1,565 |
by rmoretti Tue, 2014-11-18 09:10 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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5,741 |
by lanselibai Wed, 2014-11-12 11:17 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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4,482 |
by lanselibai Tue, 2014-11-11 15:28 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,160 |
by lanselibai Tue, 2014-11-11 04:42 |
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loop_length_changing by lanselibai » Tue, 2014-10-14 04:10 |
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10,183 |
by lanselibai Fri, 2014-11-07 02:06 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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1,999 |
by rmoretti Tue, 2014-11-04 10:33 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
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5,624 |
by rmoretti Tue, 2014-11-04 10:28 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,159 |
by rmoretti Tue, 2014-11-04 08:53 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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5,112 |
by rmoretti Mon, 2014-11-03 15:47 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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3,392 |
by lanselibai Mon, 2014-11-03 13:15 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,427 |
by jharamesh Mon, 2014-11-03 12:50 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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1,719 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
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1,635 |
by jadolfbr Fri, 2014-10-31 08:45 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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1,585 |
by rmoretti Thu, 2014-10-23 13:55 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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3,540 |
by lanselibai Thu, 2014-10-23 03:26 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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2,550 |
by krlitros87 Wed, 2014-10-22 09:31 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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2,281 |
by jadolfbr Mon, 2014-10-20 13:42 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,038 |
by rmoretti Fri, 2014-10-17 10:17 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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6,126 |
by lanselibai Fri, 2014-10-17 05:10 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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2,208 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,131 |
by lanselibai Wed, 2014-10-15 03:52 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
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18,634 |
by lanselibai Wed, 2014-10-15 01:54 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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2,638 |
by lanselibai Mon, 2014-10-13 10:10 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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2,400 |
by chelsell Wed, 2014-10-08 12:25 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,213 |
by Pernille Wed, 2014-10-08 10:41 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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4,592 |
by jadolfbr Tue, 2014-10-07 16:05 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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8,412 |
by lanselibai Tue, 2014-10-07 02:58 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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2,464 |
by rmoretti Mon, 2014-10-06 16:00 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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2,724 |
by lanselibai Mon, 2014-10-06 15:30 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
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7,993 |
by lanselibai Wed, 2014-10-01 02:13 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
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1,898 |
by ays Tue, 2014-09-30 08:31 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
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7,596 |
by lanselibai Tue, 2014-09-30 03:45 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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3,552 |
by lanselibai Tue, 2014-09-30 02:28 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
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1,609 |
by everyday847 Sun, 2014-09-28 21:16 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
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3,141 |
by lanselibai Fri, 2014-09-26 14:58 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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4,008 |
by lanselibai Wed, 2014-09-24 13:21 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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1,967 |
by kamau Wed, 2014-09-24 11:35 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
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9,226 |
by kamau Mon, 2014-09-22 09:39 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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1,504 |
by rmoretti Thu, 2014-08-28 09:42 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,114 |
by sushreet Tue, 2014-08-26 13:02 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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1,991 |
by rmoretti Fri, 2014-08-15 08:06 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
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2,045 |
by cam11 Wed, 2014-08-13 10:06 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
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7,289 |
by rmoretti Tue, 2014-08-12 08:15 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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12,377 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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3,224 |
by protos_heis Tue, 2014-08-05 12:47 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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2,312 |
by rmoretti Mon, 2014-08-04 14:51 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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2,261 |
by franfdez Mon, 2014-07-28 01:04 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
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1,575 |
by rmoretti Sun, 2014-07-27 10:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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1,836 |
by rmoretti Mon, 2014-07-21 10:51 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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1,943 |
by felipet Thu, 2014-07-17 10:13 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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1,725 |
by smlewis Mon, 2014-07-07 11:58 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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2,933 |
by Pernille Thu, 2014-07-03 07:21 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
3 |
3,745 |
by rmoretti Wed, 2014-07-02 16:55 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
0 |
1,022 |
by felipet Wed, 2014-07-02 10:23 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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2,508 |
by felipet Wed, 2014-07-02 07:26 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
1,550 |
by Pernille Fri, 2014-06-20 00:17 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
3 |
3,567 |
by rmoretti Tue, 2014-06-17 08:51 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
2,540 |
by attesor Mon, 2014-06-16 07:34 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
2,413 |
by ahonegger Fri, 2014-06-06 09:31 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
3,462 |
by kxiao Thu, 2014-06-05 08:37 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
1,955 |
by mdidonato Wed, 2014-06-04 14:55 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
0 |
1,126 |
by msk Tue, 2014-06-03 11:09 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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1,673 |
by rmoretti Mon, 2014-05-26 09:29 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
4,521 |
by afmo Thu, 2014-05-22 01:19 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
2,997 |
by rmoretti Mon, 2014-05-12 15:16 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,032 |
by rmoretti Mon, 2014-05-12 15:08 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
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3,039 |
by jadolfbr Mon, 2014-05-12 10:41 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
2,659 |
by ahonegger Mon, 2014-05-12 09:08 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,102 |
by rmoretti Mon, 2014-05-12 08:45 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
1 |
2,353 |
by smlewis Mon, 2014-05-12 08:32 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
2,648 |
by rmoretti Mon, 2014-05-12 08:25 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
10,611 |
by rmoretti Thu, 2014-04-24 14:43 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
5,458 |
by rmoretti Mon, 2014-04-21 10:47 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
6 |
6,104 |
by rmoretti Mon, 2014-04-21 06:48 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
4,023 |
by fred Mon, 2014-04-21 06:48 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
4,304 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
2 |
2,587 |
by fred Mon, 2014-04-21 06:48 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
2,624 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
6 |
4,926 |
by tfliu Mon, 2014-04-21 06:48 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,172 |
by rmoretti Mon, 2014-04-21 06:48 |
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