You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
| Topic / Topic starter | Replies | Views |
Last post |
|
|---|---|---|---|---|
|
ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
13 |
15,832 |
by rmoretti Thu, 2016-04-28 16:43 |
|
|
Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
1 |
1,806 |
by Derek Wed, 2016-04-27 01:31 |
|
|
Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,454 |
by Marius1987 Sun, 2016-04-10 12:09 |
|
|
Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
2,003 |
by rmoretti Fri, 2016-04-08 07:39 |
|
|
Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,908 |
by kbuhr Mon, 2016-03-28 01:08 |
|
|
Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,657 |
by Marius1987 Mon, 2016-03-14 04:34 |
|
|
De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,354 |
by dee2711453 Fri, 2016-03-11 21:32 |
|
|
Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,760 |
by smlewis Wed, 2016-03-09 04:11 |
|
|
wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
0 |
1,312 |
by aaj Fri, 2016-02-26 08:40 |
|
|
Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
1 |
2,024 |
by rmoretti Wed, 2016-02-24 14:39 |
|
|
creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
2 |
2,427 |
by aaj Wed, 2016-02-24 07:37 |
|
|
Space Swap!!! by jrcf » Sun, 2016-02-14 11:43 |
2 |
2,462 |
by jrcf Mon, 2016-02-15 17:59 |
|
|
No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
3,233 |
by jrcf Fri, 2016-02-12 16:42 |
|
|
CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
6 |
6,697 |
by Marius1987 Fri, 2016-02-05 07:20 |
|
|
Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
3 |
4,203 |
by Derek Smith Wed, 2016-02-03 05:47 |
|
|
ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
2,908 |
by rmoretti Tue, 2016-01-05 08:35 |
|
|
RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
5,432 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
|
|
Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
0 |
1,418 |
by achambe Mon, 2016-01-04 11:26 |
|
|
CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
1,909 |
by rmoretti Tue, 2015-12-15 09:48 |
|
|
Inserting residues using RosettaRemodel by eleishaj » Tue, 2015-11-24 08:54 |
7 |
7,856 |
by eyong123 Wed, 2015-12-09 07:17 |
|
|
RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,844 |
by jtmacd Fri, 2015-12-04 03:11 |
|
|
Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
1 |
2,112 |
by rmoretti Tue, 2015-11-24 16:16 |
|
|
cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
1 |
2,224 |
by rmoretti Tue, 2015-11-24 16:07 |
|
|
RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
6,941 |
by rmoretti Tue, 2015-11-24 15:30 |
|
|
Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,544 |
by rosend Tue, 2015-11-17 12:12 |
|
|
very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
2 |
2,988 |
by attesor Tue, 2015-11-17 07:36 |
|
|
what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,702 |
by rmoretti Tue, 2015-11-10 11:35 |
|
|
Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,801 |
by rmoretti Tue, 2015-11-10 11:10 |
|
|
FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
6 |
6,040 |
by syoifczeri Sat, 2015-11-07 21:42 |
|
|
JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
2,156 |
by rmoretti Sat, 2015-10-31 08:57 |
|
|
Can I change high-resolution filter in SymDock by attesor » Fri, 2015-10-23 07:35 |
2 |
2,536 |
by attesor Mon, 2015-10-26 09:01 |
|
|
heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
1 |
1,800 |
by smlewis Thu, 2015-10-22 08:04 |
|
|
symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
5 |
7,330 |
by attesor Wed, 2015-10-21 13:53 |
|
|
Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
3,848 |
by rmoretti Mon, 2015-10-12 15:20 |
|
|
Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
6,475 |
by rmoretti Mon, 2015-10-12 15:10 |
|
|
Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
3,881 |
by jrcf Mon, 2015-10-05 21:32 |
|
|
ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
1 |
2,113 |
by rmoretti Fri, 2015-10-02 12:30 |
|
|
-kill_hairpin error by jadolfbr » Wed, 2011-10-05 18:53 |
11 |
16,219 |
by rmoretti Mon, 2015-09-28 15:00 |
|
|
fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
4 |
4,928 |
by tylerborrman Mon, 2015-09-28 09:30 |
|
|
score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,600 |
by tylerborrman Wed, 2015-09-23 10:51 |
|
|
Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
3,840 |
by jrcf Mon, 2015-09-21 11:10 |
|
|
Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,455 |
by rmoretti Thu, 2015-09-17 12:47 |
|
|
Use NMR ensemble in protein-protein docking? by cossio » Sun, 2015-09-13 07:57 |
2 |
2,944 |
by cossio Tue, 2015-09-15 12:48 |
|
|
How to model missing residues on a protein from multiple PDB files? by cossio » Fri, 2015-08-21 07:18 |
6 |
12,505 |
by rmoretti Fri, 2015-09-11 13:27 |
|
|
Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
1 |
2,213 |
by jadolfbr Wed, 2015-09-09 12:35 |
|
|
Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
4 |
4,669 |
by rmoretti Wed, 2015-09-09 12:08 |
|
|
Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
1,951 |
by rmoretti Wed, 2015-09-09 12:01 |
|
|
ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
1 |
2,936 |
by rmoretti Fri, 2015-09-04 10:25 |
|
|
InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
4,204 |
by jadolfbr Thu, 2015-09-03 16:18 |
|
|
Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
6 |
7,725 |
by rmoretti Wed, 2015-09-02 12:43 |
|
|
Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,929 |
by rmoretti Wed, 2015-09-02 12:33 |
|
|
Abinitio protocol and X-Ray diffraction data by allan.ferrari » Wed, 2015-08-12 12:49 |
2 |
2,744 |
by allan.ferrari Fri, 2015-08-28 12:07 |
|
|
autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
2,066 |
by sgourn Tue, 2015-08-18 18:25 |
|
|
variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
6,501 |
by rmoretti Tue, 2015-08-18 16:47 |
|
|
Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
1 |
1,939 |
by bernhardcl Tue, 2015-08-11 09:11 |
|
|
homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
2 |
2,707 |
by jharamesh Sat, 2015-08-08 19:51 |
|
|
how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
1 |
1,953 |
by rmoretti Thu, 2015-08-06 08:57 |
|
|
molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
2,333 |
by rmoretti Tue, 2015-07-14 14:59 |
|
|
How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
3,008 |
by rmoretti Sat, 2015-07-11 13:38 |
|
|
Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
2,067 |
by rmoretti Fri, 2015-07-03 14:41 |
|
|
Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
6 |
6,756 |
by eyong123 Mon, 2015-06-29 04:44 |
|
|
docking with constraints and flexible bb by mintseris » Mon, 2015-06-22 09:07 |
2 |
2,905 |
by mintseris Wed, 2015-06-24 22:04 |
|
|
auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,915 |
by beowulfey Tue, 2015-06-23 16:10 |
|
|
Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
2,116 |
by rmoretti Sat, 2015-06-20 20:07 |
|
|
folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,645 |
by rmoretti Fri, 2015-06-19 13:53 |
|
|
Ensemble Docking in Rosetta3.5? by protos_heis » Fri, 2015-05-22 06:42 |
7 |
8,014 |
by protos_heis Mon, 2015-06-08 07:00 |
|
|
Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
1 |
1,899 |
by smlewis Mon, 2015-06-08 06:35 |
|
|
rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,491 |
by mtyras Mon, 2015-06-08 03:18 |
|
|
Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,442 |
by chelsell Wed, 2015-05-27 14:36 |
|
|
Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
1 |
2,023 |
by rmoretti Mon, 2015-05-25 12:37 |
|
|
Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
1 |
2,155 |
by rmoretti Mon, 2015-05-25 12:30 |
|
|
SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
2,971 |
by rmoretti Mon, 2015-05-25 11:49 |
|
|
loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
1 |
2,572 |
by rmoretti Mon, 2015-05-25 11:30 |
|
|
Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
5,143 |
by rmoretti Thu, 2015-04-30 16:46 |
|
|
Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,557 |
by kalabharath Wed, 2015-04-29 16:21 |
|
|
Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,549 |
by shaunmk Mon, 2015-04-27 02:33 |
|
|
JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
3,169 |
by Wizard Sun, 2015-04-26 22:36 |
|
|
Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
5 |
5,701 |
by rmoretti Fri, 2015-04-24 12:02 |
|
|
Enzdes scorefile lost, can I recreate it by eyong123 » Wed, 2015-04-15 05:55 |
2 |
2,529 |
by eyong123 Wed, 2015-04-22 11:33 |
|
|
Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,655 |
by dswhit Tue, 2015-04-21 10:14 |
|
|
ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
6,457 |
by rmoretti Thu, 2015-04-16 11:23 |
|
|
Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,566 |
by rmoretti Thu, 2015-04-16 10:38 |
|
|
Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
0 |
1,507 |
by jennifer Wed, 2015-04-08 05:29 |
|
|
the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
6 |
6,275 |
by jadolfbr Tue, 2015-04-07 10:50 |
|
|
Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
5 |
6,773 |
by rmoretti Tue, 2015-03-31 08:56 |
|
|
Warning messages in Interface analyzer output by Pernille » Wed, 2015-03-25 00:53 |
4 |
4,221 |
by rmoretti Tue, 2015-03-31 08:20 |
|
|
Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,351 |
by jennifer Fri, 2015-03-27 05:56 |
|
|
Design a peptide linked to small molecule ligand by shaunmk » Mon, 2015-03-02 09:05 |
1 |
2,394 |
by rmoretti Wed, 2015-03-25 12:39 |
|
|
References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,726 |
by rmoretti Wed, 2015-03-25 11:33 |
|
|
Calculate_protein_protein_ddg by kamau » Fri, 2015-01-30 11:27 |
2 |
2,811 |
by deepanshuiitb Thu, 2015-03-19 19:14 |
|
|
Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
2 |
2,939 |
by syoifczeri Tue, 2015-03-10 23:08 |
|
|
ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
4 |
5,950 |
by lanselibai Sun, 2015-03-01 15:00 |
|
|
Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
2,788 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
|
|
Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,701 |
by lanselibai Tue, 2015-02-24 02:36 |
|
|
Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
5,423 |
by felipet Wed, 2015-02-11 05:13 |
|
|
Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
1 |
2,182 |
by rmoretti Mon, 2015-02-09 12:33 |
|
|
Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
5 |
4,837 |
by rmoretti Mon, 2015-02-09 12:04 |
|
|
minirosetta: how to reserve (inter-chain) disulfides after relax ? by lanselibai » Sat, 2015-01-24 10:56 |
0 |
2,144 |
by lanselibai Thu, 2015-01-29 00:50 |
|
|
Ab initio with multiple metal ions by cheyuk » Sun, 2013-12-29 17:58 |
19 |
19,113 |
by masterofpuppets Tue, 2015-01-27 04:26 |
|
|
extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
4 |
4,733 |
by attesor Tue, 2015-01-27 02:20 |
Log in to post new content in the forum.
