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Rosetta 3 - Applications
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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1,300 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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How to add a residue to one chain of an existing structure? by sn » Mon, 2017-04-17 09:34 |
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2,911 |
by sn Thu, 2017-04-20 21:43 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,428 |
by smlewis Tue, 2019-09-24 12:43 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
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1,961 |
by rmoretti Thu, 2015-08-06 08:57 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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709 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,540 |
by JackMaguire Fri, 2019-08-16 07:41 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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5,039 |
by wangyr Mon, 2014-04-21 06:47 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,286 |
by ahonegger Mon, 2014-05-12 09:08 |
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How do I compare the results of InterfaceAnalyzer using different trimers as input? by franz72 » Sun, 2023-08-06 10:10 |
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100 |
by franz72 Sun, 2023-08-06 10:10 |
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How do I change the default Compiler for Rosetta？ by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,198 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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How can I set ref2015 and ligand.wts(-restore_pre_talaris_2013_behavior ) by asbelx » Sat, 2019-06-08 00:07 |
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2,286 |
by happycaapi Tue, 2021-06-29 15:35 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
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7,282 |
by lanselibai Wed, 2014-11-12 11:17 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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1,120 |
by danpf Fri, 2020-02-21 17:05 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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5,475 |
by rmoretti Mon, 2014-04-21 06:47 |
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Homology Modelling with cofactors by Derek Smith » Thu, 2015-07-09 08:24 |
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4,214 |
by Derek Smith Wed, 2016-02-03 05:47 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,945 |
by bernhardcl Tue, 2015-08-11 09:11 |
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Homology Modeling-no PDB output by jlawrie » Wed, 2020-08-12 06:30 |
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1,589 |
by jlawrie Wed, 2020-08-12 08:56 |
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homology modeling- Error: length mismatch between sequence and alignment. by pdbb » Mon, 2012-10-01 07:57 |
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4,249 |
by pdbb Mon, 2014-04-21 06:47 |
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homology modeling with threading says length mismatch between sequence and alignment by rqliang » Thu, 2015-08-06 11:46 |
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2,716 |
by jharamesh Sat, 2015-08-08 19:51 |
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homology modeling with end extension by fred » Mon, 2012-10-08 14:19 |
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16,776 |
by xpzhang Mon, 2014-04-21 06:47 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
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2,765 |
by smlewis Mon, 2014-04-21 06:48 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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4,767 |
by rmoretti Mon, 2014-04-21 06:47 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,356 |
by smlewis Mon, 2014-04-21 06:47 |
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Highly negative total score by Ruchi_P_Jain » Wed, 2019-04-24 19:55 |
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1,574 |
by nannemdp Thu, 2019-04-25 07:58 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
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3,153 |
by tfliu Mon, 2014-04-21 06:48 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,733 |
by rmoretti Mon, 2014-05-12 15:16 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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867 |
by rmoretti Thu, 2021-04-29 10:44 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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6,093 |
by lzx32 Mon, 2014-04-21 06:47 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
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1,251 |
by rtorquato Fri, 2022-11-25 12:05 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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881 |
by engand93 Wed, 2019-03-27 02:43 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
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1,628 |
by Sandy Tue, 2016-05-31 18:48 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
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1,810 |
by smlewis Thu, 2015-10-22 08:04 |
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hbond_sr_bb and hbond_lr_bb for different chains by tylerborrman » Tue, 2020-10-13 13:41 |
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1,538 |
by tylerborrman Tue, 2021-02-09 16:33 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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3,961 |
by protos_heis Tue, 2014-08-05 12:47 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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4,875 |
by jessye Fri, 2017-11-03 20:15 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
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1,839 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Grafting using antibody.mpi.linuxgccrelease and specifying custom template which doesnt have pdb id. by SubhaK » Wed, 2023-01-18 23:33 |
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753 |
by SubhaK Wed, 2023-01-18 23:33 |
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Got error when running minirosetta.linuxgccrelease on cluster but fine on Ubuntu by lanselibai » Mon, 2014-11-10 08:12 |
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2,736 |
by lanselibai Tue, 2014-11-11 04:42 |
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Global Docking with carbohydrates by ChiauShu » Sat, 2020-08-22 20:16 |
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815 |
by ChiauShu Sat, 2020-08-22 20:16 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,392 |
by smlewis Tue, 2017-08-15 23:19 |
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getting a3m files by alonwenger » Wed, 2021-12-15 02:38 |
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2,062 |
by alonwenger Sat, 2021-12-18 12:32 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,222 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Generating the 3-mer and 9-mer fragments by Prasoon » Wed, 2022-02-09 09:04 |
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940 |
by Prasoon Wed, 2022-02-09 09:04 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
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1,768 |
by smlewis Wed, 2016-03-09 04:11 |
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Generating a new Vall database by vijay.anand » Tue, 2023-06-20 12:08 |
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135 |
by vijay.anand Tue, 2023-06-20 12:08 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
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3,309 |
by deltag Mon, 2014-04-21 06:47 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
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3,889 |
by jrcf Mon, 2015-10-05 21:32 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
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1,253 |
by chenna Mon, 2021-04-12 22:08 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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1,197 |
by chenna Wed, 2021-04-28 07:18 |
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General question regarding ligand-docking by Alison_Yajie » Thu, 2020-05-07 09:48 |
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688 |
by Alison_Yajie Thu, 2020-05-07 09:48 |
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Garbled Ligands from docking_protocol by skovacs » Tue, 2011-12-20 07:55 |
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17,972 |
by skovacs Mon, 2014-04-21 06:47 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,425 |
by achambe Mon, 2016-01-04 11:26 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
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2,909 |
by rmoretti Mon, 2014-04-21 06:48 |
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fragment_picker:[ ERROR ] UtilityExitException ERROR: can't open file: $ROSETTA/tools/fragment_tools/vall.jul19.2011.gz by yueyuedake » Wed, 2023-07-12 03:36 |
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304 |
by yueyuedake Sun, 2023-07-16 19:17 |
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fragment_picker.mpi.linuxgccrelease can't find : libsqlite3.so by starone » Mon, 2016-06-20 19:22 |
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12,442 |
by starone Fri, 2016-06-24 18:29 |
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fragment_picker with fasta only by gw » Tue, 2011-11-15 13:20 |
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4,173 |
by gw Mon, 2014-04-21 06:47 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
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1,692 |
by David Hoover Mon, 2014-04-21 06:47 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
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3,062 |
by exchhattu Mon, 2014-04-21 06:47 |
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
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10,126 |
by smlewis Wed, 2016-08-17 07:56 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
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1,519 |
by alex Sun, 2017-02-19 08:12 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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3,271 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
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6,414 |
by yarovoy Mon, 2014-04-21 06:47 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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2,915 |
by dgront Mon, 2014-04-21 06:47 |
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Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
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9,176 |
by smlewis Fri, 2017-09-08 09:16 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
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3,661 |
by rmoretti Fri, 2015-06-19 13:53 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
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1,781 |
by danielles Mon, 2014-04-21 06:47 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
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7,630 |
by smlewis Mon, 2014-04-21 06:47 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
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2,312 |
by smlewis Mon, 2014-04-21 06:47 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
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2,916 |
by smlewis Mon, 2014-04-21 06:47 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
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3,466 |
by rmoretti Thu, 2015-09-17 12:47 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,178 |
by smlewis Mon, 2014-07-07 11:58 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,720 |
by smlewis Fri, 2016-11-11 08:33 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
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3,580 |
by felipet Mon, 2014-04-21 06:47 |
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FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
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14,963 |
by bbarryabc Mon, 2014-04-21 06:47 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,324 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
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6,049 |
by syoifczeri Sat, 2015-11-07 21:42 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,950 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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716 |
by wangtao Thu, 2022-05-05 02:46 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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920 |
by jcampecino Wed, 2020-05-13 12:22 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
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2,490 |
by ays Tue, 2014-09-30 08:31 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
4,513 |
by rmoretti Mon, 2014-04-21 06:47 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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795 |
by jlawrie Tue, 2020-09-15 12:52 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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1,126 |
by evo_umich Mon, 2018-04-02 12:13 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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1,037 |
by mbakalar Fri, 2018-08-31 13:06 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,496 |
by smlewis Mon, 2014-04-21 06:47 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
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3,794 |
by smlewis Mon, 2014-04-21 06:47 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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3,880 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
2 |
2,667 |
by cam11 Wed, 2014-08-13 10:06 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
0 |
600 |
by nrollins Mon, 2021-07-26 14:29 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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3,095 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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557 |
by nrollins Mon, 2021-07-26 14:16 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
0 |
644 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
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3,343 |
by michael_luntan Mon, 2014-04-21 06:47 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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5,971 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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5,351 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
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2,992 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,631 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
1 |
2,636 |
by smlewis Mon, 2014-04-21 06:47 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,228 |
by jadolfbr Tue, 2020-01-28 09:13 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
1 |
2,121 |
by rmoretti Tue, 2015-11-24 16:16 |
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