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Rosetta 3 - Applications
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fragment picker does not follow dihedral constraints by attesor » Tue, 2016-05-24 23:22 |
12 |
8,321 |
by smlewis Wed, 2016-08-17 07:56 |
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Fragment library (vall file) from Robetta? by alex » Sun, 2017-02-19 08:12 |
0 |
1,242 |
by alex Sun, 2017-02-19 08:12 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
7 |
5,291 |
by yarovoy Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
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2,769 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Fragment Files by nkemjika » Fri, 2011-07-22 15:11 |
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2,496 |
by dgront Mon, 2014-04-21 06:47 |
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Folppy Tail and Constraints by sfulad2 » Fri, 2017-05-12 12:23 |
15 |
7,089 |
by smlewis Fri, 2017-09-08 09:16 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,066 |
by rmoretti Fri, 2015-06-19 13:53 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,540 |
by danielles Mon, 2014-04-21 06:47 |
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Fold tree C->N: RosettaScripts by aroop » Wed, 2013-02-13 10:31 |
8 |
6,431 |
by smlewis Mon, 2014-04-21 06:47 |
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fold and dock protocol not working by ytao » Mon, 2012-11-26 15:33 |
1 |
1,994 |
by smlewis Mon, 2014-04-21 06:47 |
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Fold and Dock - chains not in contact by arthuc01 » Wed, 2012-06-13 01:45 |
2 |
2,469 |
by smlewis Mon, 2014-04-21 06:47 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
2,778 |
by rmoretti Thu, 2015-09-17 12:47 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
1 |
1,805 |
by smlewis Mon, 2014-07-07 11:58 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,364 |
by smlewis Fri, 2016-11-11 08:33 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,066 |
by felipet Mon, 2014-04-21 06:47 |
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FloppyTail bugs for N-terminal tails by Dave C » Thu, 2012-03-01 13:06 |
18 |
12,749 |
by bbarryabc Mon, 2014-04-21 06:47 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
0 |
1,070 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
6 |
5,118 |
by syoifczeri Sat, 2015-11-07 21:42 |
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Floppy tail: sidechain mutation during calculation by syoifczeri » Mon, 2015-03-09 19:01 |
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2,448 |
by syoifczeri Tue, 2015-03-10 23:08 |
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Flex_ddG突变设计 by wangtao » Thu, 2022-05-05 02:46 |
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44 |
by wangtao Thu, 2022-05-05 02:46 |
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Flex_ddG crashes when attempting to move 2 chains (e.g. chains_to_move = A,C) by jcampecino » Wed, 2020-05-13 12:22 |
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553 |
by jcampecino Wed, 2020-05-13 12:22 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
2 |
2,006 |
by ays Tue, 2014-09-30 08:31 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
3 |
3,897 |
by rmoretti Mon, 2014-04-21 06:47 |
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FlexPepDocking by jlawrie » Tue, 2020-09-15 12:52 |
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488 |
by jlawrie Tue, 2020-09-15 12:52 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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844 |
by evo_umich Mon, 2018-04-02 12:13 |
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Flexpepdock I_hb scoring term by mbakalar » Fri, 2018-08-31 13:05 |
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752 |
by mbakalar Fri, 2018-08-31 13:06 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,177 |
by smlewis Mon, 2014-04-21 06:47 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,181 |
by smlewis Mon, 2014-04-21 06:47 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
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3,274 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
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2,167 |
by cam11 Wed, 2014-08-13 10:06 |
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FlexPepDock bug? Constraints do not appear in total_score? by nrollins » Mon, 2021-07-26 14:29 |
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287 |
by nrollins Mon, 2021-07-26 14:29 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
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2,617 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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245 |
by nrollins Mon, 2021-07-26 14:16 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
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367 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
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2,845 |
by michael_luntan Mon, 2014-04-21 06:47 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
5,056 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
5 |
4,539 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
2,563 |
by rlwoltz Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,313 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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2,247 |
by smlewis Mon, 2014-04-21 06:47 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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839 |
by jadolfbr Tue, 2020-01-28 09:13 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
1 |
1,699 |
by rmoretti Tue, 2015-11-24 16:16 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
10 |
9,696 |
by kamau Mon, 2014-09-22 09:39 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
0 |
2,046 |
by kamau Wed, 2014-09-24 11:35 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
4,500 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Fixbb Multiple Resfiles by protos_heis » Mon, 2012-10-15 10:34 |
18 |
11,983 |
by protos_heis Mon, 2014-04-21 06:47 |
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fixbb design using damped LJ by Anonymous » Fri, 2012-08-17 03:51 |
8 |
6,406 |
by Anonymous Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
4 |
3,768 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
4 |
4,124 |
by tylerborrman Mon, 2015-09-28 09:30 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
5,477 |
by albumns Mon, 2014-04-21 06:47 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,202 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
1 |
2,152 |
by smlewis Mon, 2014-04-21 06:47 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
4 |
1,424 |
by vmulligan Mon, 2020-03-02 13:40 |
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Filter ddg_filter reports failure! by deepanshuiitb » Fri, 2015-02-27 18:19 |
2 |
2,278 |
by deepanshuiitb Sat, 2015-02-28 19:24 |
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Filter based on ligand_is_touching by Swillard » Mon, 2017-09-11 19:00 |
3 |
2,098 |
by rmoretti Mon, 2018-11-12 14:35 |
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Filling the missing loops by code_Monkey » Tue, 2021-04-27 07:44 |
2 |
574 |
by code_Monkey Tue, 2021-04-27 12:11 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
1 |
1,453 |
by Derek Wed, 2016-04-27 01:31 |
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Fewer than expected structures in clustering output by fabiotrovato » Thu, 2020-08-20 00:59 |
0 |
425 |
by fabiotrovato Thu, 2020-08-20 00:59 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
4 |
3,953 |
by smlewis Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
4 |
3,767 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastsaxs by Pernille » Mon, 2013-07-22 07:29 |
14 |
34,149 |
by rmoretti Mon, 2021-06-14 12:56 |
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FastRelaxMover parameters for antibody-antigen interaction analysis by samuel_k » Thu, 2022-01-27 01:08 |
0 |
227 |
by samuel_k Thu, 2022-01-27 01:08 |
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FastRelax Refinement severe clashes by Victor Tobiasson » Thu, 2021-05-20 06:55 |
0 |
340 |
by Victor Tobiasson Thu, 2021-05-20 06:55 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
1,627 |
by Pernille Fri, 2014-06-20 00:17 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,109 |
by Pernille Thu, 2014-07-03 07:21 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
1 |
814 |
by rmoretti Wed, 2020-09-16 22:11 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
1,423 |
by rmoretti Fri, 2017-04-21 07:41 |
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Failing Fragment libraries us Chemical shifts with Robettaa by kalabharath » Tue, 2015-04-28 19:33 |
2 |
2,099 |
by kalabharath Wed, 2015-04-29 16:21 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
1 |
1,684 |
by everyday847 Sun, 2014-09-28 21:16 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
4 |
3,988 |
by attesor Tue, 2015-01-27 02:20 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
5 |
4,057 |
by rmoretti Thu, 2017-08-24 08:19 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
0 |
538 |
by almeida85 Mon, 2020-08-31 07:17 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
5,686 |
by rmoretti Mon, 2014-04-21 10:47 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
2,547 |
by rmoretti Fri, 2018-11-23 11:23 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
656 |
by Ruska322 Sat, 2019-09-07 05:21 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,118 |
by lanselibai Tue, 2015-02-24 02:36 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
2,950 |
by maxebert Mon, 2014-04-21 06:47 |
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Errors in Getting Erraser to run by belousoff » Thu, 2017-06-01 16:13 |
15 |
8,588 |
by belousoff Mon, 2017-06-26 16:46 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
1 |
2,307 |
by rmoretti Mon, 2014-04-21 06:47 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
1,229 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
2,844 |
by rayyoung Thu, 2021-11-18 10:13 |
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ERROR: Specified chain does not exist. by ajaniharesh » Fri, 2019-04-05 11:14 |
2 |
1,671 |
by ajaniharesh Tue, 2019-04-09 06:53 |
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ERROR: no fragment to compute secondary structure by byin » Sun, 2011-08-07 23:55 |
3 |
3,709 |
by smlewis Mon, 2014-04-21 06:47 |
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Error: in membrane docking : Cannot split pose by membrane jump! Quitting... by Astghik » Tue, 2020-11-24 05:27 |
2 |
829 |
by Astghik Thu, 2020-12-03 02:35 |
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ERROR: APBS failed to generate the result file. by bhavranek » Sat, 2021-12-18 11:01 |
1 |
224 |
by bhavranek Sun, 2021-12-26 21:05 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
1 |
1,871 |
by gsuchunli Mon, 2016-07-25 13:56 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
1,564 |
by rmoretti Tue, 2016-07-12 08:56 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
5 |
1,878 |
by vmulligan Fri, 2020-04-10 02:54 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
2,387 |
by rmoretti Tue, 2019-07-09 10:13 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
1 |
908 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Error with recognizing rotamer library atoms by oerbilgin » Fri, 2011-11-04 15:23 |
19 |
23,848 |
by oerbilgin Mon, 2014-04-21 06:47 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
2,795 |
by smlewis Mon, 2014-04-21 06:47 |
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Error with Formatdb of legacy blast when running "install_dependencies.pl"? by Danielsebas » Mon, 2019-09-16 09:30 |
2 |
1,041 |
by Danielsebas Tue, 2019-09-17 01:03 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,147 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
2,696 |
by subha Fri, 2017-06-09 15:42 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,220 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Error while running Enzyme Design by saxen » Fri, 2011-10-21 15:46 |
11 |
8,683 |
by akpole Mon, 2014-04-21 06:47 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
4 |
6,490 |
by weitzner Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
4 |
4,308 |
by rmoretti Thu, 2015-04-30 16:46 |
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Error when using Remodel on a protein with a chemically bound ligand by Pappmaschee » Wed, 2020-12-16 09:23 |
0 |
500 |
by Pappmaschee Wed, 2020-12-16 09:23 |
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