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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
2,651 by Denise
Thu, 2017-06-15 04:26
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
2,660 by smlewis
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
2,674 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
2,674 by rmoretti
Fri, 2017-12-01 12:05
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,679 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
2,680 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
2,681 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
2,686 by lanselibai
Mon, 2014-10-06 15:30
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,689 by weehee
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
2,690 by smlewis
Mon, 2014-04-21 06:47
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
2,691 by chelsell
Wed, 2015-05-27 14:36
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
2,692 by cn
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
2,704 by cdegut
Fri, 2017-11-03 05:50
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
2,705 by alexn
Mon, 2014-04-21 06:47
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,714 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
2,721 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
2,731 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
2,748 by deltag
Mon, 2014-04-21 06:47
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
2
2,748 by cossio
Tue, 2015-01-20 06:40
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
2,753 by rmoretti
Thu, 2015-04-16 10:38
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
2,756 by smlewis
Mon, 2016-05-02 08:20
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
2,766 by max
Thu, 2014-11-27 02:56
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,778 by mtyras
Mon, 2015-06-08 03:18
Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
2,794 by purvi24
Mon, 2019-03-11 06:43
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
2,795 by smlewis
Mon, 2014-04-21 06:47
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
2,796 by maxebert
Mon, 2014-04-21 06:47
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
2,805 by rmoretti
Tue, 2016-07-12 09:41
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
2,808 by tsztain
Tue, 2018-12-11 13:41
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
2,810 by smlewis
Wed, 2018-08-08 15:48
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
2,814 by rmoretti
Wed, 2016-09-14 02:05
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
2,817 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Lammps or RosettaSurface
by StevPChem » Fri, 2016-06-10 10:13
3
2,835 by Anpu
Tue, 2018-09-25 18:53
Normal topic Can't append or prepend with pepspec
by danzinho » Tue, 2015-03-31 01:19
3
2,837 by dswhit
Tue, 2015-04-21 10:14
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
2,839 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
2,848 by rosend
Tue, 2015-11-17 12:12
Normal topic Not found some Flags
by jrcf » Sat, 2015-09-19 12:08
2
2,854 by jrcf
Mon, 2015-09-21 11:10
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
2,855 by smlewis
Fri, 2017-01-20 08:14
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
2,859 by attesor
Thu, 2017-03-16 01:21
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
2,861 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
2,862 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Fastrelax problem
by Pernille » Fri, 2014-06-20 00:16
2
2,864 by Pernille
Thu, 2014-07-03 07:21
Normal topic folding ectodomain in membrane ab initio
by freedman » Mon, 2015-05-25 21:09
3
2,871 by rmoretti
Fri, 2015-06-19 13:53
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
2,875 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
2,876 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
2,889 by felipet
Mon, 2014-04-21 06:47
Normal topic Missing CS-HM-Rosetta Binary files
by Marius1987 » Wed, 2016-02-10 05:52
3
2,890 by Marius1987
Mon, 2016-03-14 04:34
Normal topic what does initialize_rigid_body_dofs do?
by attesor » Mon, 2015-10-26 05:12
3
2,900 by rmoretti
Tue, 2015-11-10 11:35
Normal topic Executing the clean_pdb.py script
by Rkfoury » Fri, 2015-02-20 10:16
1
2,911 by lanselibai
Tue, 2015-02-24 02:36
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
2,912 by smlewis
Mon, 2014-04-21 06:48
Normal topic strange effect in: SymDock.linuxgccrelease
by ast » Tue, 2013-06-11 11:05
3
2,925 by ast
Mon, 2014-04-21 06:48
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
2,926 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic High energies after loopmodel run
by michki » Thu, 2014-05-08 05:14
3
2,941 by rmoretti
Mon, 2014-05-12 15:16
Normal topic Structure determination combining X-ray diffraction data and NMR chemical shift
by MajorID » Mon, 2011-10-17 19:55
2
2,942 by rmoretti
Mon, 2014-04-21 06:47
Normal topic pdb2vall
by JadAbbass » Mon, 2013-07-08 12:11
3
2,944 by rmoretti
Mon, 2014-04-21 06:48
Normal topic proline patching problem
by xun » Tue, 2012-01-03 11:15
3
2,949 by xun
Mon, 2014-04-21 06:47
Normal topic Ligand dock analysis
by sacch » Tue, 2012-05-22 01:20
3
2,977 by glemmon
Mon, 2014-04-21 06:47
Normal topic Can only relax one structure at a time
by lah435 » Wed, 2012-12-12 01:55
3
2,984 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
2,986 by harshkhare
Mon, 2014-04-21 06:47
Normal topic Error when running Remodel with EnzDes constraint file to extend c-terminal
by Jeffrey_Chen » Thu, 2017-01-19 06:20
4
2,990 by dfcoelho
Tue, 2017-10-17 11:52
Normal topic FlexPepDock for protein containing multiple chains
by Dimitrov » Mon, 2012-10-08 08:31
3
2,992 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking)
by snorp » Mon, 2014-04-14 13:01
2
3,008 by jadolfbr
Mon, 2014-05-12 10:41
Normal topic printing our per-residue energies including H-bonding energies
by vijayan » Tue, 2013-07-02 08:51
2
3,009 by rmoretti
Mon, 2014-04-21 06:48
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,016 by fred
Mon, 2014-04-21 06:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,021 by rmoretti
Tue, 2016-07-12 09:30
Normal topic auto_setup_metals flag with loop modeling application fails
by beowulfey » Wed, 2015-06-10 07:44
3
3,027 by beowulfey
Tue, 2015-06-23 16:10
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
3,035 by mxp
Mon, 2019-08-12 18:42
Normal topic Multiple Chain Comparative Modeling - End result is not even close to template structure
by eskici » Wed, 2012-08-29 08:09
2
3,039 by eskici
Mon, 2014-04-21 06:47
Normal topic Modeling of side-chains onto membrane ab initio cluster?
by akfried » Thu, 2011-06-23 04:03
3
3,048 by nkemjika
Mon, 2014-04-21 06:47
Normal topic xyzVector error in Enzyme design
by ajmbarbosa » Tue, 2016-01-05 09:46
3
3,052 by rmoretti
Fri, 2016-06-17 10:36
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,053 by smlewis
Mon, 2014-04-21 06:47
Normal topic clustering in RosettaRemodel
by cheyuk » Wed, 2014-04-23 03:09
3
3,058 by rmoretti
Mon, 2014-05-12 08:45
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,061 by jarod
Mon, 2014-04-21 06:47
Normal topic Generate fragment file on my computer
by jrcf » Mon, 2015-09-21 15:41
2
3,063 by jrcf
Mon, 2015-10-05 21:32
Normal topic Per residue scoring
by chelsell » Mon, 2015-08-17 14:43
3
3,078 by rmoretti
Wed, 2015-09-02 12:33
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
3,080 by fradom
Tue, 2017-12-05 01:52
Normal topic flexpepdock flag "-packing:unboundrot"
by gw » Mon, 2011-07-11 12:23
2
3,081 by Ora Schueler-Furman
Mon, 2014-04-21 06:47
Normal topic Problem with SymmDock in helical symmetry
by mumdonar » Wed, 2013-09-18 03:59
2
3,084 by mumdonar
Mon, 2014-04-21 06:48
Normal topic Problem with symmetric docking
by saxen » Fri, 2011-04-29 15:15
3
3,089 by smlewis
Mon, 2014-04-21 06:47
Normal topic Constraints in RosettaCM
by kbuhr » Fri, 2015-07-31 06:55
3
3,093 by kbuhr
Mon, 2016-03-28 01:08
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,104 by lanselibai
Fri, 2014-09-26 14:58
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,106 by jtmacd
Fri, 2015-12-04 03:11
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,114 by mdyini
Mon, 2014-04-21 06:47
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,119 by smlewis
Mon, 2014-04-21 06:47
Normal topic A question on the logic of enzyme design
by agulsevin » Thu, 2013-06-13 08:10
2
3,131 by agulsevin
Mon, 2014-04-21 06:48
Normal topic partial ab initio modeling
by fred » Wed, 2011-08-17 14:14
3
3,133 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
3,133 by David Weis
Mon, 2017-03-13 10:59
Normal topic Error when running Remodel with EnzDes constraint file
by aloshbau » Wed, 2013-04-17 22:23
2
3,147 by aloshbau
Mon, 2014-04-21 06:47
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,152 by dgront
Mon, 2014-04-21 06:47
Normal topic InterfaceAnalyzer dSasa calculation
by mintseris » Wed, 2015-09-02 09:43
2
3,180 by jadolfbr
Thu, 2015-09-03 16:18
Normal topic HBNet and RosettaScripts
by protos_heis » Tue, 2014-08-05 06:05
3
3,180 by protos_heis
Tue, 2014-08-05 12:47
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
3,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
3,190 by rmoretti
Mon, 2018-11-12 14:31
Normal topic Problems running pmut in parallel with openmpi
by RMJ » Fri, 2012-09-21 06:25
2
3,209 by RMJ
Mon, 2014-04-21 06:47
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
3,232 by rmoretti
Mon, 2017-02-20 08:09
Normal topic pmut_scan does not produce log file
by fglaser » Wed, 2013-10-16 07:25
3
3,251 by matteoferla
Tue, 2018-10-30 02:54
Normal topic Pepspec Errors running 3.4
by rrphenix » Tue, 2013-05-28 12:08
4
3,252 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,262 by ahonegger
Mon, 2014-04-21 06:47
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
3,277 by jessye
Fri, 2017-11-03 20:15
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
3,281 by smlewis
Thu, 2018-06-14 10:26
Normal topic loopmodel thinks there are no residues in the pose
by lah435 » Wed, 2013-03-27 02:46
3
3,289 by rmoretti
Mon, 2014-04-21 06:47
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