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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,905 by mintseris
Wed, 2015-06-24 22:04
Normal topic Fold and Dock - chains not in contact
by arthuc01 » Wed, 2012-06-13 01:45
2
2,906 by smlewis
Mon, 2014-04-21 06:47
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,908 by rmoretti
Tue, 2016-01-05 08:35
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
2,910 by dgront
Mon, 2014-04-21 06:47
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
2,920 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
2,921 by lchen
Mon, 2014-04-21 06:47
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
2,922 by rmoretti
Mon, 2019-11-04 13:56
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
2,922 by rmoretti
Tue, 2020-07-14 10:54
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
2,923 by rmoretti
Thu, 2018-06-28 12:58
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
2,926 by cossio
Fri, 2018-05-18 09:51
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,936 by rmoretti
Fri, 2015-09-04 10:25
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,937 by rmoretti
Thu, 2017-02-02 09:02
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
2,937 by shadrinams
Wed, 2018-03-14 07:46
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
2,939 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
2,944 by cossio
Tue, 2015-09-15 12:48
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,949 by dantimatter
Wed, 2019-10-30 09:43
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
2,961 by smlewis
Mon, 2014-04-21 06:47
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,971 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,973 by smlewis
Mon, 2014-05-12 08:32
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
2,978 by banshee
Mon, 2016-09-12 23:41
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
2,979 by rmoretti
Thu, 2017-08-24 11:00
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,982 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
2,985 by lanselibai
Wed, 2015-01-21 02:40
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,990 by attesor
Tue, 2015-11-17 07:36
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,991 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,992 by smlewis
Wed, 2017-02-15 07:43
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
2,996 by ashu4487
Mon, 2018-07-16 19:24
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
2,997 by subha
Fri, 2018-04-20 12:49
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
2,997 by chelsell
Wed, 2014-10-08 12:25
Normal topic How to use Rosetta to DISCARD a protein-protein docking interface?
by cossio » Tue, 2015-05-26 06:24
2
3,008 by rmoretti
Sat, 2015-07-11 13:38
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
3,008 by rmoretti
Wed, 2017-03-01 13:10
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
3,012 by Loki01
Thu, 2018-04-12 08:28
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
3,019 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
3,027 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
3,043 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
3,053 by rmoretti
Fri, 2019-03-29 12:25
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
3,055 by ahonegger
Fri, 2014-06-06 09:31
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
3,056 by exchhattu
Mon, 2014-04-21 06:47
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
3,071 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
3,073 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
3,076 by MajorID
Mon, 2014-04-21 06:47
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
3,079 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
3,081 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
3,082 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
3,084 by felipet
Wed, 2014-07-02 07:26
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
3,085 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
3,086 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Score.sc file showing total score 0 for all protein structures created
by aanshi » Wed, 2022-11-23 11:13
1
3,092 by nannemdp
Mon, 2022-11-28 09:39
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
3,101 by sn
Mon, 2017-03-06 10:03
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
3,107 by sacch
Mon, 2014-04-21 06:47
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
3,118 by rmoretti
Mon, 2014-10-06 16:00
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
3,124 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
3,128 by ast
Mon, 2014-04-21 06:48
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
3,130 by smlewis
Mon, 2014-04-21 06:47
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
3,139 by tfliu
Mon, 2014-04-21 06:48
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
3,141 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
3,148 by brspurri
Thu, 2017-06-01 10:58
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
3,148 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic protein protein interaction design
by Negarsardar » Wed, 2019-05-15 06:13
3
3,155 by ajasja
Wed, 2019-05-15 15:40
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
3,159 by a_s_a
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
3,160 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
3,169 by Wizard
Sun, 2015-04-26 22:36
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
3,172 by krlitros87
Wed, 2014-10-22 09:31
Normal topic cartesian_ddg output
by cossio » Thu, 2018-10-11 14:58
2
3,177 by cossio
Fri, 2018-10-12 04:43
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
3,187 by fred
Mon, 2014-04-21 06:48
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
3,187 by yperez
Mon, 2014-04-21 06:47
Normal topic Missing atoms and cannot find atom pose when refining ligand position with EM density
by BuddySphinx » Mon, 2018-12-31 16:22
2
3,206 by e3lm
Tue, 2021-09-14 10:02
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
3,214 by rmoretti
Mon, 2014-05-12 08:25
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
3,233 by jrcf
Fri, 2016-02-12 16:42
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
3,266 by sumukh21
Mon, 2014-04-21 06:47
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
3,268 by attesor
Mon, 2014-06-16 07:34
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
3,277 by ahonegger
Mon, 2014-05-12 09:08
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
3,277 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
3,281 by rmoretti
Thu, 2017-04-20 13:59
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
3,284 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
3,286 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
3,294 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
3,304 by deltag
Mon, 2014-04-21 06:47
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
3,307 by rmoretti
Mon, 2014-04-21 06:48
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
3,310 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
3,312 by rmoretti
Fri, 2020-07-10 09:59
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
3,336 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
3,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
3,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
3,344 by lanselibai
Mon, 2014-10-06 15:30
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
3,351 by jennifer
Fri, 2015-03-27 05:56
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
3,354 by Ashafix
Mon, 2014-04-21 06:48
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
3,354 by rmoretti
Tue, 2017-10-10 09:58
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
3,355 by dee2711453
Fri, 2016-03-11 21:32
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
3,370 by alexn
Mon, 2014-04-21 06:47
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,383 by cn
Mon, 2014-04-21 06:47
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
3,391 by rmoretti
Thu, 2018-06-28 12:44
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
3,400 by rmoretti
Tue, 2016-07-12 09:05
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
3,405 by rmoretti
Fri, 2018-11-23 11:23
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
6
3,406 by chandana
Tue, 2022-08-09 20:27
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
3,411 by xingqing326
Tue, 2020-04-21 19:11
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
3,411 by maxebert
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
3,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
3,418 by lanselibai
Tue, 2015-01-13 14:25
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
3,422 by subha
Fri, 2017-06-09 15:42
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