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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
2,749 by attesor
Tue, 2015-11-17 07:36
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
2,749 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
2,750 by chelsell
Wed, 2014-10-08 12:25
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
2,757 by sn
Mon, 2017-03-06 10:03
Normal topic Score.sc file showing total score 0 for all protein structures created
by aanshi » Wed, 2022-11-23 11:13
1
2,759 by nannemdp
Mon, 2022-11-28 09:39
Normal topic How to use Rosetta to DISCARD a protein-protein docking interface?
by cossio » Tue, 2015-05-26 06:24
2
2,771 by rmoretti
Sat, 2015-07-11 13:38
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
2,776 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
2,778 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
2,781 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,783 by rmoretti
Mon, 2015-05-25 11:49
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
2,792 by lanselibai
Wed, 2015-01-21 02:40
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
2,796 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
2,796 by rmoretti
Fri, 2019-03-29 12:25
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
2,804 by ahonegger
Fri, 2014-06-06 09:31
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
2,810 by rmoretti
Fri, 2020-07-10 09:59
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,818 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
2,819 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
2,832 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
2,835 by brspurri
Thu, 2017-06-01 10:58
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
2,853 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
2,857 by MajorID
Mon, 2014-04-21 06:47
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
2,871 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
2,876 by felipet
Wed, 2014-07-02 07:26
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
2,880 by rmoretti
Mon, 2014-10-06 16:00
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
2,886 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
2,891 by smlewis
Mon, 2014-04-21 06:47
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
2,892 by sacch
Mon, 2014-04-21 06:47
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
2,903 by johnnytam100
Thu, 2019-04-25 19:28
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
2,905 by Wizard
Sun, 2015-04-26 22:36
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
2,913 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
2,917 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
2,924 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
2,925 by tfliu
Mon, 2014-04-21 06:48
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
2,935 by ast
Mon, 2014-04-21 06:48
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
2,937 by jrcf
Fri, 2016-02-12 16:42
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
2,956 by a_s_a
Mon, 2014-04-21 06:47
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
2,963 by fred
Mon, 2014-04-21 06:48
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
2,965 by krlitros87
Wed, 2014-10-22 09:31
Normal topic Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM
by ajkal » Fri, 2017-04-14 08:44
3
2,969 by rmoretti
Thu, 2017-04-20 13:59
Normal topic How to preserve ACE/NME termini?
by nitroamos » Tue, 2018-05-22 13:07
3
2,978 by rmoretti
Thu, 2018-06-28 12:44
Normal topic How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI
by kingljy » Sun, 2017-09-24 18:37
3
2,980 by rmoretti
Tue, 2017-10-10 09:58
Normal topic Threading a sequence onto a template with ligands/metal ions included
by ajkal » Wed, 2017-04-19 11:53
3
2,981 by ahmadkhalifa
Sun, 2019-03-31 23:27
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
2,990 by yperez
Mon, 2014-04-21 06:47
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,996 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
3,002 by rmoretti
Mon, 2014-05-12 08:25
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
3,006 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Extract PDB structures from database
by cossio » Mon, 2018-01-29 09:30
3
3,014 by rmoretti
Fri, 2018-11-23 11:23
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
3,040 by attesor
Mon, 2014-06-16 07:34
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
3,041 by sumukh21
Mon, 2014-04-21 06:47
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
3,042 by ahonegger
Mon, 2014-05-12 09:08
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
3,049 by lanselibai
Mon, 2014-10-13 10:10
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
3,049 by rmoretti
Tue, 2019-07-09 10:13
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
3,051 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
3,055 by brspurri
Sat, 2017-08-26 07:08
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
3,068 by jhm13c
Thu, 2017-03-02 12:01
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
3,069 by dee2711453
Fri, 2016-03-11 21:32
Normal topic Total score problems with high-res ddg_monomer
by jklesmith » Tue, 2015-03-10 15:54
2
3,078 by jennifer
Fri, 2015-03-27 05:56
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
3,078 by subha
Fri, 2017-06-09 15:42
Normal topic conformational sampling of multi domain protein
by dhirajks » Tue, 2017-07-04 11:20
4
3,085 by jrporter
Wed, 2017-07-05 06:30
Normal topic error with fragment_picker.linuxgccrelease
by jiongzhang » Tue, 2012-04-17 09:07
3
3,085 by smlewis
Mon, 2014-04-21 06:47
Normal topic problem with fixed_membrane option of membrane abinitio
by yescalona » Thu, 2013-01-17 15:42
3
3,096 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to sort a Silent File based on RMSD
by JadAbbass » Sun, 2013-08-04 14:40
2
3,096 by lanselibai
Mon, 2014-10-06 15:30
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
3,113 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
3,117 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring input pdbs as the same as docking score
by hamedkhakzad » Fri, 2016-07-01 07:15
3
3,124 by rmoretti
Tue, 2016-07-12 09:05
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
3,126 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
3,126 by deltag
Mon, 2014-04-21 06:47
Normal topic Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB"
by brspurri » Fri, 2017-03-24 10:52
3
3,127 by brspurri
Fri, 2017-03-24 11:35
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
3,128 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease?
by lanselibai » Thu, 2015-01-08 03:23
3
3,139 by lanselibai
Tue, 2015-01-13 14:25
Normal topic minimize_with_cst problems (ddg_monomer)
by alexn » Tue, 2011-09-20 13:46
2
3,140 by alexn
Mon, 2014-04-21 06:47
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
3,147 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,148 by cn
Mon, 2014-04-21 06:47
Normal topic Fnat and Irms are nan in score.sc from docking_protocol?
by cossio » Sun, 2015-09-13 07:34
2
3,154 by rmoretti
Thu, 2015-09-17 12:47
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
3,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic Trouble enforcing a disulfide in loop building
by chelsell » Sun, 2015-05-10 16:31
2
3,179 by chelsell
Wed, 2015-05-27 14:36
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
3,185 by smlewis
Wed, 2017-12-13 09:54
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
3,189 by weehee
Mon, 2014-04-21 06:47
Normal topic example scripts for comparative modeling
by fglaser » Sun, 2011-02-27 21:50
2
3,204 by maxebert
Mon, 2014-04-21 06:47
Normal topic  The error of InterfaceAnalyzer
by asbelx » Thu, 2017-12-21 19:04
3
3,211 by smlewis
Sat, 2017-12-23 15:56
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
3,220 by bjharris
Sun, 2020-08-23 14:03
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
3,221 by MJG
Tue, 2017-04-04 23:59
Normal topic MaxSub and MaxSub2.0
by JadAbbass » Tue, 2013-10-15 13:36
2
3,224 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
3,234 by tong
Sun, 2018-06-24 23:30
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
3,237 by mtyras
Mon, 2015-06-08 03:18
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
3,239 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved]
by loreseeker » Wed, 2011-09-14 08:13
2
3,242 by loreseeker
Mon, 2014-04-21 06:47
Normal topic Error encountered during Rosetta loop modeling
by max » Tue, 2014-11-25 02:17
3
3,248 by max
Thu, 2014-11-27 02:56
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
3,262 by Yero
Thu, 2019-07-18 01:39
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
3,269 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file?
by lanselibai » Sun, 2014-11-16 10:26
3
3,275 by G Mustafa
Thu, 2018-10-18 05:31
Normal topic Compiling Rosetta 3.3 on Linux Mint
by proteinproteindock » Thu, 2011-09-01 16:05
2
3,280 by proteinproteindock
Mon, 2014-04-21 06:47
Normal topic Enzdes constraint file not defined correctly
by eyong123 » Fri, 2015-03-27 07:16
3
3,290 by rmoretti
Thu, 2015-04-16 10:38
Normal topic Add missing residues in loop modeling
by exchhattu » Thu, 2013-06-20 17:38
1
3,296 by smlewis
Mon, 2014-04-21 06:48
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
3,298 by smlewis
Tue, 2017-07-11 07:53
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
3,302 by rosend
Tue, 2015-11-17 12:12
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
3,304 by smlewis
Mon, 2016-05-02 08:20
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,312 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic Loop design with length variation
by jarod » Thu, 2016-06-16 19:54
3
3,315 by rmoretti
Tue, 2016-07-12 09:41
Normal topic Floppytail modelling
by felipet » Fri, 2011-06-24 09:23
2
3,334 by felipet
Mon, 2014-04-21 06:47
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