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Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic Ligand params file proton_chi parameters
by staciekim » Thu, 2017-08-17 14:50
2
3,093 by staciekim
Thu, 2017-08-17 17:06
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
3,094 by rmoretti
Tue, 2017-03-28 08:51
Normal topic Pre-packing a model for SWA loop building
by franfdez » Sun, 2014-07-27 02:16
2
3,096 by franfdez
Mon, 2014-07-28 01:04
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
3,100 by danpf
Fri, 2019-09-06 11:29
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
3,100 by smlewis
Mon, 2017-01-23 06:26
Normal topic Fragment Files
by nkemjika » Fri, 2011-07-22 15:11
1
3,116 by dgront
Mon, 2014-04-21 06:47
Normal topic Multistate design issues with -run:msd_job_dist option and MSDMover
by elaine.thai » Wed, 2020-05-13 18:07
2
3,122 by Jane_002
Thu, 2023-08-03 19:47
Normal topic where to look for positive sign for solution in mr-rosetta3.4?
by lchen » Tue, 2012-07-10 09:38
2
3,127 by lchen
Mon, 2014-04-21 06:47
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
3,130 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
3,135 by everyday847
Wed, 2020-05-20 08:52
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
3,136 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Packstat score in InterfaceAnalyzer
by Vedasheersh » Fri, 2017-01-27 06:21
2
3,145 by smlewis
Fri, 2017-01-27 07:20
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
3,148 by rmoretti
Tue, 2016-01-05 08:35
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
3,159 by smlewis
Wed, 2021-12-08 13:02
Normal topic KeyError: 'subject-id' in antibody modelling
by bogac » Mon, 2017-03-06 02:00
2
3,161 by bogac
Tue, 2017-03-07 02:11
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
3,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexpep docking freezing issue at "press enter to continue"
by rlwoltz » Tue, 2013-01-22 13:31
2
3,178 by rlwoltz
Mon, 2014-04-21 06:47
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
3,178 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Floppy tail: sidechain mutation during calculation
by syoifczeri » Mon, 2015-03-09 19:01
2
3,178 by syoifczeri
Tue, 2015-03-10 23:08
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
3,179 by mintseris
Wed, 2015-06-24 22:04
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
3,195 by lanselibai
Wed, 2015-01-21 02:40
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
3,195 by rmoretti
Fri, 2015-09-04 10:25
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
3,200 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
3,203 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
3,204 by rmoretti
Fri, 2015-01-02 11:45
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
3,205 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
3,205 by Astghik
Thu, 2020-10-15 00:48
Normal topic Use NMR ensemble in protein-protein docking?
by cossio » Sun, 2015-09-13 07:57
2
3,212 by cossio
Tue, 2015-09-15 12:48
Normal topic Can rosetta generate a centroid model based on the rna sequence?
by yels » Fri, 2021-03-26 04:06
7
3,214 by yels
Wed, 2021-03-31 18:31
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
3,225 by smlewis
Mon, 2014-05-12 08:32
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
3,225 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
3,230 by rmoretti
Fri, 2016-04-29 09:21
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
3,241 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
3,248 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Membrane homology modeling loop building gives very strange outputs
by chelsell » Tue, 2014-09-30 14:46
2
3,249 by chelsell
Wed, 2014-10-08 12:25
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
3,254 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic Behavior of nstruct
by johnnytam100 » Wed, 2019-05-15 22:22
3
3,267 by johnnytam100
Tue, 2019-05-21 20:48
Normal topic The question of ligand docking with constraints
by asbelx » Mon, 2018-06-11 09:39
3
3,269 by rmoretti
Thu, 2018-06-28 12:58
Normal topic Idealize in Rosetta 3.3
by jadolfbr » Tue, 2011-12-06 11:59
2
3,269 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
3,270 by rmoretti
Thu, 2017-02-02 09:02
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
3,271 by banshee
Mon, 2016-09-12 23:41
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
3,280 by smlewis
Mon, 2019-09-23 11:42
Normal topic How to use Rosetta to DISCARD a protein-protein docking interface?
by cossio » Tue, 2015-05-26 06:24
2
3,280 by rmoretti
Sat, 2015-07-11 13:38
Normal topic very good I_sc values (if not too good)
by attesor » Tue, 2015-11-03 03:30
2
3,282 by attesor
Tue, 2015-11-17 07:36
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
3,284 by ziruiw
Fri, 2021-04-30 12:01
Normal topic Fragments for long sequence
by exchhattu » Tue, 2011-10-04 01:51
2
3,284 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
1
3,287 by Payne
Tue, 2022-06-21 07:25
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
3,288 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Segmentation Fault in Fragment picking
by ashu4487 » Fri, 2018-07-06 20:47
2
3,296 by ashu4487
Mon, 2018-07-16 19:24
Normal topic how to reconstruct the whole complex after symmetric docking
by Anonymous » Tue, 2012-07-03 02:44
2
3,307 by felipet
Wed, 2014-07-02 07:26
Normal topic FlexPepDock and total score problem
by tkellici » Fri, 2014-01-17 06:07
2
3,310 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
3,311 by rmoretti
Wed, 2018-03-07 08:44
Normal topic The question about ligand score function
by asbelx » Sun, 2018-06-17 02:07
2
3,312 by asbelx
Mon, 2018-06-18 22:34
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
3,315 by smlewis
Wed, 2017-02-15 07:43
Normal topic Modeling flexible linkers with Floppytail
by pdbb » Sun, 2013-05-12 15:55
2
3,317 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to add constrains to FlexPepDocking?
by MajorID » Thu, 2011-06-02 11:00
2
3,320 by MajorID
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
3,324 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
3,326 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Allow region of protein to move in a certain direction
by sn » Wed, 2017-08-23 17:07
3
3,335 by rmoretti
Thu, 2017-08-24 11:00
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
3,338 by shadrinams
Wed, 2018-03-14 07:46
Normal topic How to add a residue to one chain of an existing structure?
by sn » Mon, 2017-04-17 09:34
2
3,338 by sn
Thu, 2017-04-20 21:43
Normal topic cartesian_ddg error: "Assertion `files.size() == 1` failed."
by cossio » Fri, 2018-05-11 09:59
2
3,345 by cossio
Fri, 2018-05-18 09:51
Normal topic prepack_example.sh error message
by sacch » Sun, 2011-10-23 23:22
2
3,354 by sacch
Mon, 2014-04-21 06:47
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
3,359 by rmoretti
Fri, 2019-03-29 12:25
Normal topic How tu use Delta filter's relax_mover
by pocin » Sun, 2017-02-19 05:21
3
3,360 by rmoretti
Wed, 2017-03-01 13:10
Normal topic select_best_unique_ligand_poses output
by ast » Thu, 2013-07-11 02:33
2
3,361 by ast
Mon, 2014-04-21 06:48
Normal topic ProteinLigandInterfaceUpweighter for protein-protein interactions?
by ahonegger » Mon, 2014-06-02 06:53
2
3,363 by ahonegger
Fri, 2014-06-06 09:31
Normal topic high-res docking
by tfliu » Mon, 2013-07-15 02:49
2
3,366 by tfliu
Mon, 2014-04-21 06:48
Normal topic clustering
by ays » Tue, 2014-09-30 08:26
2
3,368 by rmoretti
Mon, 2014-10-06 16:00
Normal topic select_best_unique_ligand_poses - Ligand docking
by subha » Thu, 2018-04-19 10:36
4
3,372 by subha
Fri, 2018-04-20 12:49
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
3,375 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
3,377 by danpf
Tue, 2020-05-12 10:58
Normal topic kinematic loop modeling multiple input: possible?
by a_s_a » Thu, 2011-05-12 09:33
2
3,381 by a_s_a
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
3,382 by yperez
Mon, 2014-04-21 06:47
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
3,392 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio
by malkeet.singh » Thu, 2018-05-10 05:34
3
3,407 by malkeet.singh
Mon, 2018-05-21 04:26
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
3,408 by fred
Mon, 2014-04-21 06:48
Normal topic ab initio modelling - what to do next?
by krlitros87 » Thu, 2014-10-16 13:05
2
3,427 by krlitros87
Wed, 2014-10-22 09:31
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
3,440 by rmoretti
Tue, 2020-07-14 10:54
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
3,441 by rmoretti
Mon, 2014-05-12 08:25
Normal topic relax protein with multi-conformer bound ligand
by xfradera » Thu, 2023-01-12 09:10
4
3,442 by rmoretti
Mon, 2023-02-06 15:06
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
3,446 by Loki01
Thu, 2018-04-12 08:28
Normal topic JobDistributor problem in antibody modeling
by Wizard » Wed, 2015-04-22 00:35
2
3,460 by Wizard
Sun, 2015-04-26 22:36
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
3,465 by dantimatter
Wed, 2019-10-30 09:43
Normal topic Adding water interactions when docking a ligand with Rosetta 3.7.
by brspurri » Thu, 2017-06-01 09:37
2
3,466 by brspurri
Thu, 2017-06-01 10:58
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
3,477 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
3,478 by smlewis
Mon, 2014-04-21 06:47
Normal topic Warnings during relax
by cossio » Thu, 2018-10-11 14:42
2
3,480 by rmoretti
Mon, 2019-11-04 13:56
Normal topic The Usage of motifgraft
by Sunyp_IM » Sun, 2017-11-19 20:22
2
3,483 by Sunyp_IM
Mon, 2017-11-20 19:20
Normal topic Perform MPI relax with movemap files
by sn » Sun, 2017-03-05 13:18
3
3,487 by sn
Mon, 2017-03-06 10:03
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
3,498 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
3,511 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Generate fragment locally
by deltag » Wed, 2012-02-01 06:26
2
3,516 by deltag
Mon, 2014-04-21 06:47
Normal topic PIKAA in resfile does not mutate Cys in disulfide bond to specified residue
by attesor » Fri, 2014-03-14 07:53
2
3,518 by attesor
Mon, 2014-06-16 07:34
Normal topic How do I explicitly add residues for design in the interface optimization script?
by ahonegger » Mon, 2014-05-12 07:40
2
3,520 by ahonegger
Mon, 2014-05-12 09:08
Normal topic Abinito for Multimers
by Prasanth Kumar » Wed, 2014-01-22 17:45
2
3,530 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Use "loopmodel.linuxgccrelease" CCD to build missing residue positions
by lanselibai » Sun, 2014-10-12 09:00
2
3,535 by lanselibai
Mon, 2014-10-13 10:10
Normal topic No Space
by jrcf » Mon, 2016-01-11 16:18
3
3,541 by jrcf
Fri, 2016-02-12 16:42
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Tue, 2011-02-15 17:23
2
3,555 by sumukh21
Mon, 2014-04-21 06:47
Normal topic flexpep docking, select the decoy to do the further docking, questions
by michael_luntan » Fri, 2011-04-22 04:43
2
3,564 by michael_luntan
Mon, 2014-04-21 06:47
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