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Rosetta 3 - Applications
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
2,651 |
by Denise Thu, 2017-06-15 04:26 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
2,660 |
by smlewis Mon, 2014-04-21 06:47 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
2,674 |
by michael_luntan Mon, 2014-04-21 06:47 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
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2,674 |
by rmoretti Fri, 2017-12-01 12:05 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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2,679 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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2,680 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
5 |
2,681 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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2,686 |
by lanselibai Mon, 2014-10-06 15:30 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
2,689 |
by weehee Mon, 2014-04-21 06:47 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
2,690 |
by smlewis Mon, 2014-04-21 06:47 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
2,691 |
by chelsell Wed, 2015-05-27 14:36 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
2,692 |
by cn Mon, 2014-04-21 06:47 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
2,704 |
by cdegut Fri, 2017-11-03 05:50 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
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2,705 |
by alexn Mon, 2014-04-21 06:47 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
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2,714 |
by Ashafix Mon, 2014-04-21 06:48 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
2,721 |
by G Mustafa Thu, 2018-10-18 05:31 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
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2,731 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
2,748 |
by deltag Mon, 2014-04-21 06:47 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
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2,748 |
by cossio Tue, 2015-01-20 06:40 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
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2,753 |
by rmoretti Thu, 2015-04-16 10:38 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
2,756 |
by smlewis Mon, 2016-05-02 08:20 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
2,766 |
by max Thu, 2014-11-27 02:56 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
2,778 |
by mtyras Mon, 2015-06-08 03:18 |
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
8 |
2,794 |
by purvi24 Mon, 2019-03-11 06:43 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
2,795 |
by smlewis Mon, 2014-04-21 06:47 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
2,796 |
by maxebert Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
2,805 |
by rmoretti Tue, 2016-07-12 09:41 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
5 |
2,808 |
by tsztain Tue, 2018-12-11 13:41 |
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Loop modeling - the appropriate way to model a peptide insertion? by xding » Thu, 2018-08-02 15:30 |
6 |
2,810 |
by smlewis Wed, 2018-08-08 15:48 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
2,814 |
by rmoretti Wed, 2016-09-14 02:05 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
2,817 |
by rmoretti Mon, 2014-04-21 06:48 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
2,835 |
by Anpu Tue, 2018-09-25 18:53 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
2,837 |
by dswhit Tue, 2015-04-21 10:14 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
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2,839 |
by loreseeker Mon, 2014-04-21 06:47 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
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2,848 |
by rosend Tue, 2015-11-17 12:12 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
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2,854 |
by jrcf Mon, 2015-09-21 11:10 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
5 |
2,855 |
by smlewis Fri, 2017-01-20 08:14 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
2,859 |
by attesor Thu, 2017-03-16 01:21 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
2,861 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
2,862 |
by rmoretti Mon, 2015-10-12 15:20 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
2,864 |
by Pernille Thu, 2014-07-03 07:21 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
2,871 |
by rmoretti Fri, 2015-06-19 13:53 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
2,875 |
by rmoretti Mon, 2014-04-21 06:48 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
2,876 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
2,889 |
by felipet Mon, 2014-04-21 06:47 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
2,890 |
by Marius1987 Mon, 2016-03-14 04:34 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
2,900 |
by rmoretti Tue, 2015-11-10 11:35 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
2,911 |
by lanselibai Tue, 2015-02-24 02:36 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
2,912 |
by smlewis Mon, 2014-04-21 06:48 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
2,925 |
by ast Mon, 2014-04-21 06:48 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
2,926 |
by erin_cutts Mon, 2014-04-21 06:48 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
2,941 |
by rmoretti Mon, 2014-05-12 15:16 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
2,942 |
by rmoretti Mon, 2014-04-21 06:47 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
2,944 |
by rmoretti Mon, 2014-04-21 06:48 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
2,949 |
by xun Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
2,977 |
by glemmon Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
2,984 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
2,986 |
by harshkhare Mon, 2014-04-21 06:47 |
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Error when running Remodel with EnzDes constraint file to extend c-terminal by Jeffrey_Chen » Thu, 2017-01-19 06:20 |
4 |
2,990 |
by dfcoelho Tue, 2017-10-17 11:52 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
2,992 |
by smlewis Mon, 2014-04-21 06:47 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,008 |
by jadolfbr Mon, 2014-05-12 10:41 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,009 |
by rmoretti Mon, 2014-04-21 06:48 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,016 |
by fred Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,021 |
by rmoretti Tue, 2016-07-12 09:30 |
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auto_setup_metals flag with loop modeling application fails by beowulfey » Wed, 2015-06-10 07:44 |
3 |
3,027 |
by beowulfey Tue, 2015-06-23 16:10 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
8 |
3,035 |
by mxp Mon, 2019-08-12 18:42 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,039 |
by eskici Mon, 2014-04-21 06:47 |
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Modeling of side-chains onto membrane ab initio cluster? by akfried » Thu, 2011-06-23 04:03 |
3 |
3,048 |
by nkemjika Mon, 2014-04-21 06:47 |
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xyzVector error in Enzyme design by ajmbarbosa » Tue, 2016-01-05 09:46 |
3 |
3,052 |
by rmoretti Fri, 2016-06-17 10:36 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
3 |
3,053 |
by smlewis Mon, 2014-04-21 06:47 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,058 |
by rmoretti Mon, 2014-05-12 08:45 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,061 |
by jarod Mon, 2014-04-21 06:47 |
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Generate fragment file on my computer by jrcf » Mon, 2015-09-21 15:41 |
2 |
3,063 |
by jrcf Mon, 2015-10-05 21:32 |
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Per residue scoring by chelsell » Mon, 2015-08-17 14:43 |
3 |
3,078 |
by rmoretti Wed, 2015-09-02 12:33 |
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jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease by fradom » Mon, 2017-11-27 02:55 |
6 |
3,080 |
by fradom Tue, 2017-12-05 01:52 |
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flexpepdock flag "-packing:unboundrot" by gw » Mon, 2011-07-11 12:23 |
2 |
3,081 |
by Ora Schueler-Furman Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,084 |
by mumdonar Mon, 2014-04-21 06:48 |
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Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
3,089 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
3 |
3,093 |
by kbuhr Mon, 2016-03-28 01:08 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
1 |
3,104 |
by lanselibai Fri, 2014-09-26 14:58 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,106 |
by jtmacd Fri, 2015-12-04 03:11 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
3,114 |
by mdyini Mon, 2014-04-21 06:47 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,119 |
by smlewis Mon, 2014-04-21 06:47 |
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A question on the logic of enzyme design by agulsevin » Thu, 2013-06-13 08:10 |
2 |
3,131 |
by agulsevin Mon, 2014-04-21 06:48 |
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partial ab initio modeling by fred » Wed, 2011-08-17 14:14 |
3 |
3,133 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
5 |
3,133 |
by David Weis Mon, 2017-03-13 10:59 |
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Error when running Remodel with EnzDes constraint file by aloshbau » Wed, 2013-04-17 22:23 |
2 |
3,147 |
by aloshbau Mon, 2014-04-21 06:47 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
3,152 |
by dgront Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer dSasa calculation by mintseris » Wed, 2015-09-02 09:43 |
2 |
3,180 |
by jadolfbr Thu, 2015-09-03 16:18 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
3 |
3,180 |
by protos_heis Tue, 2014-08-05 12:47 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
4 |
3,187 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
5 |
3,190 |
by rmoretti Mon, 2018-11-12 14:31 |
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Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
3,209 |
by RMJ Mon, 2014-04-21 06:47 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
3,232 |
by rmoretti Mon, 2017-02-20 08:09 |
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pmut_scan does not produce log file by fglaser » Wed, 2013-10-16 07:25 |
3 |
3,251 |
by matteoferla Tue, 2018-10-30 02:54 |
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Pepspec Errors running 3.4 by rrphenix » Tue, 2013-05-28 12:08 |
4 |
3,252 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,262 |
by ahonegger Mon, 2014-04-21 06:47 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
7 |
3,277 |
by jessye Fri, 2017-11-03 20:15 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
8 |
3,281 |
by smlewis Thu, 2018-06-14 10:26 |
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loopmodel thinks there are no residues in the pose by lah435 » Wed, 2013-03-27 02:46 |
3 |
3,289 |
by rmoretti Mon, 2014-04-21 06:47 |
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