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Rosetta 3 - Applications
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very good I_sc values (if not too good) by attesor » Tue, 2015-11-03 03:30 |
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2,749 |
by attesor Tue, 2015-11-17 07:36 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
4 |
2,749 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
2 |
2,750 |
by chelsell Wed, 2014-10-08 12:25 |
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Perform MPI relax with movemap files by sn » Sun, 2017-03-05 13:18 |
3 |
2,757 |
by sn Mon, 2017-03-06 10:03 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
1 |
2,759 |
by nannemdp Mon, 2022-11-28 09:39 |
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How to use Rosetta to DISCARD a protein-protein docking interface? by cossio » Tue, 2015-05-26 06:24 |
2 |
2,771 |
by rmoretti Sat, 2015-07-11 13:38 |
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ab initio by malkeet.singh » Thu, 2018-05-10 05:34 |
3 |
2,776 |
by malkeet.singh Mon, 2018-05-21 04:26 |
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loopmodel issue by chiendarret » Fri, 2012-01-27 00:51 |
1 |
2,778 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexpep docking freezing issue at "press enter to continue" by rlwoltz » Tue, 2013-01-22 13:31 |
2 |
2,781 |
by rlwoltz Mon, 2014-04-21 06:47 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
2,783 |
by rmoretti Mon, 2015-05-25 11:49 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,792 |
by lanselibai Wed, 2015-01-21 02:40 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
2,796 |
by rmoretti Fri, 2015-01-02 11:45 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
1 |
2,796 |
by rmoretti Fri, 2019-03-29 12:25 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
2,804 |
by ahonegger Fri, 2014-06-06 09:31 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
2,810 |
by rmoretti Fri, 2020-07-10 09:59 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
1 |
2,818 |
by rmoretti Fri, 2016-04-29 09:21 |
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Fragments for long sequence by exchhattu » Tue, 2011-10-04 01:51 |
2 |
2,819 |
by exchhattu Mon, 2014-04-21 06:47 |
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Idealize in Rosetta 3.3 by jadolfbr » Tue, 2011-12-06 11:59 |
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2,832 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Adding water interactions when docking a ligand with Rosetta 3.7. by brspurri » Thu, 2017-06-01 09:37 |
2 |
2,835 |
by brspurri Thu, 2017-06-01 10:58 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
2,853 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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How to add constrains to FlexPepDocking? by MajorID » Thu, 2011-06-02 11:00 |
2 |
2,857 |
by MajorID Mon, 2014-04-21 06:47 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
2,871 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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2,876 |
by felipet Wed, 2014-07-02 07:26 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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2,880 |
by rmoretti Mon, 2014-10-06 16:00 |
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dihedral_between_bonded_children: atoms are not both my children! by pdbb » Fri, 2013-04-05 06:40 |
3 |
2,886 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling flexible linkers with Floppytail by pdbb » Sun, 2013-05-12 15:55 |
2 |
2,891 |
by smlewis Mon, 2014-04-21 06:47 |
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prepack_example.sh error message by sacch » Sun, 2011-10-23 23:22 |
2 |
2,892 |
by sacch Mon, 2014-04-21 06:47 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
2,903 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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JobDistributor problem in antibody modeling by Wizard » Wed, 2015-04-22 00:35 |
2 |
2,905 |
by Wizard Sun, 2015-04-26 22:36 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
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2,913 |
by ic3reyes Mon, 2014-04-21 06:47 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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2,917 |
by rmoretti Mon, 2014-04-21 06:48 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
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2,924 |
by mark.wilson Mon, 2014-04-21 06:47 |
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high-res docking by tfliu » Mon, 2013-07-15 02:49 |
2 |
2,925 |
by tfliu Mon, 2014-04-21 06:48 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
2,935 |
by ast Mon, 2014-04-21 06:48 |
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No Space by jrcf » Mon, 2016-01-11 16:18 |
3 |
2,937 |
by jrcf Fri, 2016-02-12 16:42 |
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
2,956 |
by a_s_a Mon, 2014-04-21 06:47 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
2 |
2,963 |
by fred Mon, 2014-04-21 06:48 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
2 |
2,965 |
by krlitros87 Wed, 2014-10-22 09:31 |
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Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
2,969 |
by rmoretti Thu, 2017-04-20 13:59 |
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How to preserve ACE/NME termini? by nitroamos » Tue, 2018-05-22 13:07 |
3 |
2,978 |
by rmoretti Thu, 2018-06-28 12:44 |
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How to perform abinitiorelax.mpi.linuxgccrelease in parallel mode with MPI by kingljy » Sun, 2017-09-24 18:37 |
3 |
2,980 |
by rmoretti Tue, 2017-10-10 09:58 |
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Threading a sequence onto a template with ligands/metal ions included by ajkal » Wed, 2017-04-19 11:53 |
3 |
2,981 |
by ahmadkhalifa Sun, 2019-03-31 23:27 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
2,990 |
by yperez Mon, 2014-04-21 06:47 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
1 |
2,996 |
by jadolfbr Mon, 2014-04-21 06:47 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
3,002 |
by rmoretti Mon, 2014-05-12 08:25 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
4 |
3,006 |
by rmoretti Fri, 2019-03-29 09:30 |
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Extract PDB structures from database by cossio » Mon, 2018-01-29 09:30 |
3 |
3,014 |
by rmoretti Fri, 2018-11-23 11:23 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
3,040 |
by attesor Mon, 2014-06-16 07:34 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
3,041 |
by sumukh21 Mon, 2014-04-21 06:47 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
2 |
3,042 |
by ahonegger Mon, 2014-05-12 09:08 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
3,049 |
by lanselibai Mon, 2014-10-13 10:10 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
5 |
3,049 |
by rmoretti Tue, 2019-07-09 10:13 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
3,051 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,055 |
by brspurri Sat, 2017-08-26 07:08 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
3,068 |
by jhm13c Thu, 2017-03-02 12:01 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
3,069 |
by dee2711453 Fri, 2016-03-11 21:32 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
3,078 |
by jennifer Fri, 2015-03-27 05:56 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
3,078 |
by subha Fri, 2017-06-09 15:42 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
3,085 |
by jrporter Wed, 2017-07-05 06:30 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
3,085 |
by smlewis Mon, 2014-04-21 06:47 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,096 |
by smlewis Mon, 2014-04-21 06:47 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
3,096 |
by lanselibai Mon, 2014-10-06 15:30 |
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"sparks failed" error when running "make_fragments.pl"? by Danielsebas » Tue, 2019-09-03 03:43 |
6 |
3,113 |
by Jacob_Verburgt Tue, 2020-03-10 14:39 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
3,117 |
by smlewis Mon, 2014-04-21 06:47 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,124 |
by rmoretti Tue, 2016-07-12 09:05 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
2 |
3,126 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
3,126 |
by deltag Mon, 2014-04-21 06:47 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,127 |
by brspurri Fri, 2017-03-24 11:35 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,128 |
by rmoretti Mon, 2014-04-21 06:48 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
3,139 |
by lanselibai Tue, 2015-01-13 14:25 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
3,140 |
by alexn Mon, 2014-04-21 06:47 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,147 |
by Ashafix Mon, 2014-04-21 06:48 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,148 |
by cn Mon, 2014-04-21 06:47 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
3,154 |
by rmoretti Thu, 2015-09-17 12:47 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,169 |
by smlewis Mon, 2014-04-21 06:47 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
3,179 |
by chelsell Wed, 2015-05-27 14:36 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
3,185 |
by smlewis Wed, 2017-12-13 09:54 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,189 |
by weehee Mon, 2014-04-21 06:47 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
3,204 |
by maxebert Mon, 2014-04-21 06:47 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
3,211 |
by smlewis Sat, 2017-12-23 15:56 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,220 |
by bjharris Sun, 2020-08-23 14:03 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
4 |
3,221 |
by MJG Tue, 2017-04-04 23:59 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,224 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
3,234 |
by tong Sun, 2018-06-24 23:30 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,237 |
by mtyras Mon, 2015-06-08 03:18 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,239 |
by rmoretti Mon, 2014-04-21 06:48 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
3,242 |
by loreseeker Mon, 2014-04-21 06:47 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
3,248 |
by max Thu, 2014-11-27 02:56 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
3,262 |
by Yero Thu, 2019-07-18 01:39 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,269 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
3,275 |
by G Mustafa Thu, 2018-10-18 05:31 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,280 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
3,290 |
by rmoretti Thu, 2015-04-16 10:38 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,296 |
by smlewis Mon, 2014-04-21 06:48 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
3,298 |
by smlewis Tue, 2017-07-11 07:53 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,302 |
by rosend Tue, 2015-11-17 12:12 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
3,304 |
by smlewis Mon, 2016-05-02 08:20 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,312 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
3,315 |
by rmoretti Tue, 2016-07-12 09:41 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,334 |
by felipet Mon, 2014-04-21 06:47 |
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