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Rosetta 3 - Applications
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kinematic loop modeling multiple input: possible? by a_s_a » Thu, 2011-05-12 09:33 |
2 |
2,687 |
by a_s_a Mon, 2014-04-21 06:47 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
2 |
2,692 |
by krlitros87 Wed, 2014-10-22 09:31 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
4 |
2,692 |
by jhm13c Thu, 2017-03-02 12:01 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
4 |
2,696 |
by jrporter Wed, 2017-07-05 06:30 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
2 |
2,701 |
by attesor Mon, 2014-06-16 07:34 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
4 |
2,706 |
by subha Fri, 2017-06-09 15:42 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
2,707 |
by ast Mon, 2014-04-21 06:48 |
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
3 |
2,708 |
by dee2711453 Fri, 2016-03-11 21:32 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
2 |
2,709 |
by fred Mon, 2014-04-21 06:48 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
1 |
2,714 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
5 |
2,715 |
by rmoretti Thu, 2020-01-30 15:42 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
1 |
2,719 |
by ic3reyes Mon, 2014-04-21 06:47 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
2,729 |
by smlewis Wed, 2017-12-13 09:54 |
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Error in a new docking by jrcf » Wed, 2017-05-17 19:26 |
2 |
2,735 |
by tingting Tue, 2022-03-15 23:55 |
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Multistate design output by tong » Wed, 2018-06-20 00:21 |
6 |
2,750 |
by tong Sun, 2018-06-24 23:30 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
5 |
2,750 |
by Yero Thu, 2019-07-18 01:39 |
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Total score problems with high-res ddg_monomer by jklesmith » Tue, 2015-03-10 15:54 |
2 |
2,759 |
by jennifer Fri, 2015-03-27 05:56 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
2,766 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
2 |
2,769 |
by yperez Mon, 2014-04-21 06:47 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
2 |
2,771 |
by lanselibai Mon, 2014-10-13 10:10 |
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Fragment files for membrane_abinitio application by sumukh21 » Tue, 2011-02-15 17:23 |
2 |
2,775 |
by sumukh21 Mon, 2014-04-21 06:47 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
2,775 |
by rmoretti Mon, 2014-05-12 08:25 |
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Fnat and Irms are nan in score.sc from docking_protocol? by cossio » Sun, 2015-09-13 07:34 |
2 |
2,784 |
by rmoretti Thu, 2015-09-17 12:47 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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2,787 |
by ahonegger Mon, 2014-05-12 09:08 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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2,793 |
by MJG Tue, 2017-04-04 23:59 |
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error with fragment_picker.linuxgccrelease by jiongzhang » Tue, 2012-04-17 09:07 |
3 |
2,797 |
by smlewis Mon, 2014-04-21 06:47 |
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The error of InterfaceAnalyzer by asbelx » Thu, 2017-12-21 19:04 |
3 |
2,800 |
by smlewis Sat, 2017-12-23 15:56 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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2,802 |
by jadolfbr Mon, 2014-04-21 06:47 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
2,802 |
by rmoretti Tue, 2016-07-12 09:05 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
2,810 |
by brspurri Fri, 2017-03-24 11:35 |
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Does relax.linuxgccrelease fully relax the structure compared to ddg_monomer.linuxgccrelease? by lanselibai » Thu, 2015-01-08 03:23 |
3 |
2,827 |
by lanselibai Tue, 2015-01-13 14:25 |
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problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
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2,840 |
by smlewis Mon, 2014-04-21 06:47 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
2 |
2,842 |
by lanselibai Mon, 2014-10-06 15:30 |
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flexpep docking, select the decoy to do the further docking, questions by michael_luntan » Fri, 2011-04-22 04:43 |
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2,848 |
by michael_luntan Mon, 2014-04-21 06:47 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
2,856 |
by smlewis Mon, 2014-04-21 06:47 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
2,858 |
by cn Mon, 2014-04-21 06:47 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
7 |
2,863 |
by rayyoung Thu, 2021-11-18 10:13 |
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minimize_with_cst problems (ddg_monomer) by alexn » Tue, 2011-09-20 13:46 |
2 |
2,885 |
by alexn Mon, 2014-04-21 06:47 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
2,889 |
by smlewis Tue, 2017-07-11 07:53 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
2,891 |
by Ashafix Mon, 2014-04-21 06:48 |
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Trouble enforcing a disulfide in loop building by chelsell » Sun, 2015-05-10 16:31 |
2 |
2,895 |
by chelsell Wed, 2015-05-27 14:36 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
2,896 |
by weehee Mon, 2014-04-21 06:47 |
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Generate fragment locally by deltag » Wed, 2012-02-01 06:26 |
2 |
2,897 |
by deltag Mon, 2014-04-21 06:47 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
5 |
2,906 |
by dfcoelho Tue, 2018-10-16 09:05 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
2,928 |
by JadAbbass Mon, 2014-04-21 06:48 |
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modeling missing linker in a protein by Isaure de Beauchene » Fri, 2012-05-11 10:13 |
1 |
2,929 |
by smlewis Mon, 2014-04-21 06:47 |
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Different scoring applications (score vs score_aln vs score_jd2, etc.)? by cossio » Fri, 2014-12-26 07:19 |
2 |
2,930 |
by cossio Tue, 2015-01-20 06:40 |
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Why there are two outputs using pmut_scan_parallel.linuxgccrelease with a mutant list file? by lanselibai » Sun, 2014-11-16 10:26 |
3 |
2,935 |
by G Mustafa Thu, 2018-10-18 05:31 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
2,945 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error encountered during Rosetta loop modeling by max » Tue, 2014-11-25 02:17 |
3 |
2,946 |
by max Thu, 2014-11-27 02:56 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
5 |
2,946 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
2,950 |
by mtyras Mon, 2015-06-08 03:18 |
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example scripts for comparative modeling by fglaser » Sun, 2011-02-27 21:50 |
2 |
2,953 |
by maxebert Mon, 2014-04-21 06:47 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
4 |
2,961 |
by Denise Thu, 2017-06-15 04:26 |
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Enzdes constraint file not defined correctly by eyong123 » Fri, 2015-03-27 07:16 |
3 |
2,968 |
by rmoretti Thu, 2015-04-16 10:38 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
3 |
2,972 |
by smlewis Mon, 2016-05-02 08:20 |
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Pepspec - random runtime segfaults (rosetta 3.3 database replaced) [solved] by loreseeker » Wed, 2011-09-14 08:13 |
2 |
2,991 |
by loreseeker Mon, 2014-04-21 06:47 |
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Loop design with length variation by jarod » Thu, 2016-06-16 19:54 |
3 |
2,991 |
by rmoretti Tue, 2016-07-12 09:41 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
5 |
3,007 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
1 |
3,009 |
by rmoretti Mon, 2014-04-21 06:48 |
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terminal amino acids of gap has incomplete valency by malkeet.singh » Wed, 2017-11-29 05:20 |
6 |
3,012 |
by rmoretti Fri, 2017-12-01 12:05 |
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Docking seems to not parse the -nstruct flag by rosend » Tue, 2015-11-17 12:01 |
2 |
3,019 |
by rosend Tue, 2015-11-17 12:12 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,026 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
2 |
3,030 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
3,031 |
by cdegut Fri, 2017-11-03 05:50 |
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Lammps or RosettaSurface by StevPChem » Fri, 2016-06-10 10:13 |
3 |
3,041 |
by Anpu Tue, 2018-09-25 18:53 |
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how to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:40 |
5 |
3,043 |
by xinmiaohe Fri, 2019-10-04 08:54 |
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Can't append or prepend with pepspec by danzinho » Tue, 2015-03-31 01:19 |
3 |
3,050 |
by dswhit Tue, 2015-04-21 10:14 |
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Floppytail modelling by felipet » Fri, 2011-06-24 09:23 |
2 |
3,068 |
by felipet Mon, 2014-04-21 06:47 |
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folding ectodomain in membrane ab initio by freedman » Mon, 2015-05-25 21:09 |
3 |
3,070 |
by rmoretti Fri, 2015-06-19 13:53 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
2 |
3,080 |
by erin_cutts Mon, 2014-04-21 06:48 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,080 |
by smlewis Mon, 2014-04-21 06:48 |
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Not found some Flags by jrcf » Sat, 2015-09-19 12:08 |
2 |
3,080 |
by jrcf Mon, 2015-09-21 11:10 |
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strange effect in: SymDock.linuxgccrelease by ast » Tue, 2013-06-11 11:05 |
3 |
3,095 |
by ast Mon, 2014-04-21 06:48 |
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Missing CS-HM-Rosetta Binary files by Marius1987 » Wed, 2016-02-10 05:52 |
3 |
3,097 |
by Marius1987 Mon, 2016-03-14 04:34 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
3,103 |
by rmoretti Mon, 2015-10-12 15:20 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
3,104 |
by rmoretti Wed, 2016-09-14 02:05 |
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what does initialize_rigid_body_dofs do? by attesor » Mon, 2015-10-26 05:12 |
3 |
3,109 |
by rmoretti Tue, 2015-11-10 11:35 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
2 |
3,117 |
by Pernille Thu, 2014-07-03 07:21 |
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Structure determination combining X-ray diffraction data and NMR chemical shift by MajorID » Mon, 2011-10-17 19:55 |
2 |
3,130 |
by rmoretti Mon, 2014-04-21 06:47 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,132 |
by lanselibai Tue, 2015-02-24 02:36 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
5 |
3,139 |
by smlewis Fri, 2017-01-20 08:14 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
3 |
3,155 |
by rmoretti Mon, 2014-05-12 15:16 |
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printing our per-residue energies including H-bonding energies by vijayan » Tue, 2013-07-02 08:51 |
2 |
3,156 |
by rmoretti Mon, 2014-04-21 06:48 |
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proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,157 |
by xun Mon, 2014-04-21 06:47 |
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Ligand dock analysis by sacch » Tue, 2012-05-22 01:20 |
3 |
3,161 |
by glemmon Mon, 2014-04-21 06:47 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
2 |
3,164 |
by harshkhare Mon, 2014-04-21 06:47 |
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pdb2vall by JadAbbass » Mon, 2013-07-08 12:11 |
3 |
3,167 |
by rmoretti Mon, 2014-04-21 06:48 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
7 |
3,168 |
by dantimatter Wed, 2019-11-06 09:51 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
3,170 |
by attesor Thu, 2017-03-16 01:21 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
2 |
3,178 |
by jadolfbr Mon, 2014-05-12 10:41 |
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FlexPepDock for protein containing multiple chains by Dimitrov » Mon, 2012-10-08 08:31 |
3 |
3,186 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple Chain Comparative Modeling - End result is not even close to template structure by eskici » Wed, 2012-08-29 08:09 |
2 |
3,186 |
by eskici Mon, 2014-04-21 06:47 |
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Can only relax one structure at a time by lah435 » Wed, 2012-12-12 01:55 |
3 |
3,195 |
by smlewis Mon, 2014-04-21 06:47 |
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CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
15 |
3,205 |
by amorin Sat, 2021-02-27 20:29 |
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std::bad_alloc error after changing .xml script? by chrisHKL » Wed, 2020-03-04 11:44 |
10 |
3,207 |
by jadolfbr Thu, 2020-03-05 07:02 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
2 |
3,227 |
by jarod Mon, 2014-04-21 06:47 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,241 |
by mumdonar Mon, 2014-04-21 06:48 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
4 |
3,256 |
by fred Mon, 2014-04-21 06:47 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,257 |
by rmoretti Mon, 2014-05-12 08:45 |
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