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Rosetta 3 - Applications
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| Topic / Topic starter | Replies |
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Transmembrane helix fold-and-dock? by sarah_b » Tue, 2020-05-12 02:09 |
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2,140 |
by jkleman Tue, 2020-05-19 15:02 |
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Docking with loop rebuilding by kxiao » Sun, 2015-06-28 19:37 |
1 |
2,139 |
by rmoretti Fri, 2015-07-03 14:41 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
1 |
2,132 |
by sgourn Tue, 2015-08-18 18:25 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
2,127 |
by mwfranklin Mon, 2016-07-25 11:49 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
1 |
2,127 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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How to correctly incorporate constraint information into ab initio structure prediction? by johnnytam100 » Tue, 2019-02-19 03:13 |
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2,123 |
by johnnytam100 Fri, 2019-03-01 01:36 |
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DNA Interface design by zadie1118 » Wed, 2011-06-22 07:05 |
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2,119 |
by zadie1118 Mon, 2014-04-21 06:47 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
1 |
2,118 |
by rmoretti Tue, 2014-11-18 09:10 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
2,118 |
by smlewis Thu, 2020-05-21 21:05 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
2,117 |
by dnamkr Mon, 2019-12-30 11:43 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
0 |
2,114 |
by brspurri Mon, 2014-04-21 06:47 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
1 |
2,104 |
by rmoretti Tue, 2018-01-16 07:24 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
1 |
2,102 |
by rmoretti Mon, 2015-05-25 12:37 |
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"Install_dependencies.pl" gives "Aborted" when downloading "nr" database? by Danielsebas » Sat, 2019-09-14 08:53 |
3 |
2,102 |
by danpf Mon, 2019-09-16 09:51 |
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The problems on pdb renumbering by Sunyp_IM » Sun, 2017-08-20 06:39 |
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2,097 |
by Sunyp_IM Sun, 2017-08-20 06:39 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
1 |
2,097 |
by rmoretti Wed, 2019-07-10 09:22 |
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"Make_fragments.pl" can't connect to dependencies links by Corvin » Wed, 2019-09-04 23:54 |
2 |
2,093 |
by Corvin Thu, 2019-10-10 01:12 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
2,093 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
1 |
2,092 |
by rmoretti Wed, 2016-02-24 14:39 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
1 |
2,089 |
by rmoretti Thu, 2016-06-23 10:55 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
1 |
2,085 |
by everyday847 Sun, 2014-09-28 21:16 |
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Membrane protein protocol on PyRosetta by jlapin » Sat, 2018-07-28 14:41 |
2 |
2,085 |
by jlapin Wed, 2018-08-01 07:15 |
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ligand_docking_error by Alison_Yajie » Mon, 2020-04-20 12:27 |
3 |
2,084 |
by YuFei Sat, 2020-05-30 00:12 |
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Speed problem when running RosettaLigand ligand docking by Nicole Deng » Tue, 2019-10-08 04:29 |
2 |
2,084 |
by Nicole Deng Tue, 2020-11-03 19:07 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
2,082 |
by rmoretti Fri, 2016-04-08 07:39 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
4 |
2,081 |
by DGR95 Wed, 2021-04-28 16:13 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
2,078 |
by rmoretti Sun, 2014-07-27 10:48 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
2,063 |
by rmoretti Thu, 2014-10-23 13:55 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
4 |
2,057 |
by agctomer Sun, 2021-01-31 01:06 |
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Docking prepack vs. relax by David Weis » Tue, 2017-02-21 05:37 |
1 |
2,049 |
by smlewis Tue, 2017-02-21 07:58 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
1 |
2,045 |
by rmoretti Fri, 2016-09-09 07:47 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
1 |
2,045 |
by rmoretti Tue, 2015-01-13 07:44 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
1 |
2,044 |
by rmoretti Fri, 2018-11-23 07:59 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
1 |
2,043 |
by rmoretti Wed, 2014-11-26 07:51 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
2,041 |
by lanselibai Fri, 2019-12-27 09:38 |
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errors about RIFdocking by sia » Sun, 2022-07-24 20:45 |
6 |
2,038 |
by sia Tue, 2022-08-02 20:08 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
1 |
2,038 |
by rmoretti Thu, 2015-08-06 08:57 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
1 |
2,036 |
by rmoretti Wed, 2015-09-09 12:01 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
1 |
2,035 |
by Pernille Fri, 2014-06-20 00:17 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
1 |
2,027 |
by rmoretti Thu, 2014-08-28 09:42 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
2,023 |
by ozsolomon Thu, 2021-10-07 14:25 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
2,022 |
by rmoretti Tue, 2018-01-30 07:51 |
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How to run partial_thread in RosettaCM when residure are more than 9999? by lanselibai » Mon, 2020-05-11 22:43 |
2 |
2,020 |
by lanselibai Tue, 2020-05-12 20:25 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
1 |
2,016 |
by jeliazkov Fri, 2018-12-07 12:51 |
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What is a rational minimal value for the "-nstruct" option by Sunyp_IM » Fri, 2020-05-22 01:28 |
3 |
2,013 |
by nannemdp Sun, 2020-05-24 14:46 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
1 |
2,012 |
by rmoretti Thu, 2017-04-27 07:10 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
1 |
2,010 |
by bernhardcl Tue, 2015-08-11 09:11 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
1 |
2,006 |
by rmoretti Tue, 2016-07-12 08:56 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
1 |
2,002 |
by rmoretti Sat, 2017-04-15 13:30 |
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protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
2,000 |
by Negarsardar Thu, 2019-05-30 23:46 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
2,000 |
by rmoretti Tue, 2015-12-15 09:48 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
3 |
1,998 |
by benhardy Fri, 2020-06-19 07:55 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
1 |
1,988 |
by rmoretti Mon, 2017-07-03 09:17 |
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Building loop extensions in a membrane protein with Remodel by benhardy » Tue, 2020-06-02 08:21 |
2 |
1,987 |
by benhardy Sun, 2020-09-20 11:15 |
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Model monomer to fit cryo density map of a filament by BuddySphinx » Wed, 2018-12-12 18:58 |
2 |
1,981 |
by BuddySphinx Sun, 2018-12-30 16:49 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,980 |
by danpf Thu, 2020-09-24 13:44 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
1 |
1,966 |
by smlewis Mon, 2015-06-08 06:35 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
1,953 |
by rmoretti Fri, 2015-01-02 11:06 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
3 |
1,939 |
by ctqwong Mon, 2020-07-27 01:48 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
1 |
1,938 |
by rmoretti Fri, 2016-06-17 10:24 |
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GrowLigand by allan.ferrari » Sat, 2019-10-19 05:32 |
2 |
1,927 |
by allan.ferrari Tue, 2019-11-05 16:52 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
1 |
1,926 |
by rmoretti Fri, 2017-09-15 13:11 |
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How to change the axes of "-spin" in docking_protocol by Zehui Zhou » Mon, 2023-02-13 22:06 |
0 |
1,916 |
by Zehui Zhou Mon, 2023-02-13 22:06 |
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cluster,how to get the statistic data by MajorID » Wed, 2011-06-08 09:20 |
0 |
1,914 |
by MajorID Mon, 2014-04-21 06:47 |
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"make" error in "pdb2vall/structure_profile_scripts/DEPTH-CLONE-2.8.7" by Danielsebas » Mon, 2019-09-02 08:14 |
2 |
1,909 |
by Danielsebas Sun, 2019-09-08 02:08 |
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De novo structure building with medium resolution map by BuddySphinx » Tue, 2019-07-02 09:07 |
2 |
1,903 |
by BuddySphinx Tue, 2019-07-02 12:03 |
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Thread target sequence by duz » Thu, 2021-04-01 10:09 |
4 |
1,902 |
by duz Mon, 2021-05-03 07:50 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,902 |
by nannemdp Wed, 2021-02-03 08:52 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
1,894 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
1 |
1,893 |
by rmoretti Thu, 2017-08-03 09:29 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
1,890 |
by everyday847 Fri, 2019-03-29 13:13 |
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heads up for constraints using GAUSSIANFUNC by attesor » Thu, 2015-10-22 07:30 |
1 |
1,886 |
by smlewis Thu, 2015-10-22 08:04 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
1 |
1,871 |
by Derek Wed, 2016-04-27 01:31 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,870 |
by rmoretti Mon, 2017-05-15 08:54 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,867 |
by Martin Floor Tue, 2020-01-21 11:15 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
1 |
1,866 |
by rmoretti Fri, 2017-04-21 07:41 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,864 |
by rmoretti Tue, 2015-11-10 11:10 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
1 |
1,860 |
by rmoretti Wed, 2019-07-10 09:47 |
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docking parse error by dave » Tue, 2018-12-04 08:41 |
1 |
1,854 |
by rmoretti Tue, 2018-12-04 08:55 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
1,850 |
by Danielsebas Sun, 2019-09-01 02:38 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
1 |
1,846 |
by rmoretti Mon, 2017-09-04 10:33 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
1 |
1,843 |
by smlewis Mon, 2017-02-06 06:57 |
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How to Perform point mutations with NCAA by Subhrodeep Saha » Tue, 2021-06-22 02:05 |
2 |
1,838 |
by dnamkr Fri, 2022-04-22 17:00 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
1 |
1,829 |
by smlewis Thu, 2016-12-08 15:50 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,829 |
by smlewis Wed, 2016-03-09 04:11 |
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make_fragments.pl error by almeida85 » Mon, 2020-08-31 04:39 |
2 |
1,829 |
by almeida85 Tue, 2020-09-01 01:29 |
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Using residue patches in AbinitioRelax by kent » Fri, 2018-11-02 11:19 |
1 |
1,826 |
by rmoretti Wed, 2018-11-21 15:40 |
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not knowing which one of three ways to run rosettascript by xinmiaohe » Tue, 2020-10-13 13:52 |
2 |
1,822 |
by xinmiaohe Mon, 2020-10-19 13:18 |
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Imitating induced fit protocol in SymDock2 without any symmetry constraints by chenna » Fri, 2020-02-14 01:35 |
2 |
1,820 |
by chenna Wed, 2020-03-04 03:24 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
1 |
1,819 |
by rmoretti Mon, 2019-06-24 13:46 |
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Folding and Docking using Symmetry by danielles » Wed, 2012-09-12 11:32 |
0 |
1,818 |
by danielles Mon, 2014-04-21 06:47 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,817 |
by orionshih Wed, 2019-06-26 03:54 |
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antibody modeling error by mxp » Mon, 2019-09-16 18:29 |
2 |
1,809 |
by mxp Mon, 2019-09-23 01:40 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
1 |
1,807 |
by smlewis Mon, 2017-11-13 10:43 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
4 |
1,805 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
1,804 |
by rmoretti Tue, 2022-03-22 09:10 |
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The usage of antibody_H3.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 22:50 |
2 |
1,802 |
by Sunyp_IM Thu, 2020-06-04 08:20 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
1,801 |
by smlewis Mon, 2017-12-04 12:18 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,780 |
by vizcarra Thu, 2021-08-26 10:16 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
1 |
1,778 |
by rmoretti Fri, 2018-08-03 08:26 |
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