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Rosetta 3 - Applications

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Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
795 by jlawrie
Wed, 2020-08-12 08:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,345 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
1,886 by sgourn
Tue, 2015-08-18 18:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
1,556 by smlewis
Mon, 2017-11-13 10:43
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
981 by smlewis
Fri, 2019-09-27 11:54
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,342 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Input structure
by Soler » Mon, 2020-09-28 13:18
1
789 by ssrb
Tue, 2020-09-29 12:37
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,717 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
1,628 by rmoretti
Fri, 2017-04-21 07:41
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
1,087 by vmulligan
Thu, 2019-06-13 15:01
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
4,001 by rmoretti
Mon, 2014-04-21 06:48
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
2,915 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,504 by rmoretti
Tue, 2014-11-04 08:53
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
1,992 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
2,699 by rmoretti
Fri, 2015-09-04 10:25
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,282 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
2,801 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
1,785 by rmoretti
Thu, 2014-08-28 09:42
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
1,767 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,333 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
1,020 by rmoretti
Mon, 2019-08-26 12:03
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
1
653 by shivarawat115
Mon, 2022-04-11 16:10
Normal topic ReplicaDock 2.0 Native vs Input Structure Flags Confusion
by katherinemccoy » Tue, 2022-12-27 06:42
1
1,964 by Ameya
Tue, 2022-12-27 11:21
Normal topic loop modeling scoring
by Nicky_Learning_... » Wed, 2015-05-13 20:00
1
2,393 by rmoretti
Mon, 2015-05-25 11:30
Normal topic Using Rmsd RosettaScripts filter with alignment files
by bjharris » Sun, 2020-11-08 15:51
1
789 by rmoretti
Sun, 2020-11-08 18:56
Normal topic connecting rna strands together
by y_atsmonraz » Tue, 2021-11-09 05:42
1
632 by y_atsmonraz
Thu, 2021-11-11 04:51
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,349 by smlewis
Mon, 2014-04-21 06:47
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
1,009 by cryosky
Mon, 2021-03-01 21:37
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,549 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
1,867 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,440 by cdbahl
Sat, 2017-02-18 13:02
Normal topic Abinitio the Broker protocol
by ac.research » Sun, 2019-03-24 03:56
1
1,227 by rmoretti
Fri, 2019-04-05 00:18
Normal topic Issue with Rosetta LinkResidues Script
by adityapadhi » Wed, 2019-11-20 22:00
1
1,058 by JackMaguire
Fri, 2019-11-22 13:45
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,735 by smlewis
Mon, 2015-06-08 06:35
Normal topic Problem in redesign binding site
by armart999 » Fri, 2016-10-14 01:55
1
1,986 by rmoretti
Fri, 2016-10-14 08:42
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,477 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,573 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic Checkpoint with rosetta3.4
by AmelieH » Mon, 2014-12-01 15:51
1
2,221 by rmoretti
Wed, 2014-12-03 19:07
Normal topic Protein Protein Docking with Constraints
by ajaniharesh » Wed, 2019-04-10 07:26
1
1,287 by rmoretti
Thu, 2019-05-09 15:40
Normal topic cm_scripts
by sn » Wed, 2018-02-14 11:00
1
1,390 by rmoretti
Wed, 2018-02-21 15:21
Normal topic Protein-Protein Docking or Comparative Modeling
by Morrian_Lynn » Wed, 2020-01-29 19:01
1
1,038 by danpf
Fri, 2020-02-21 18:23
Normal topic ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42
by yliang20 » Wed, 2022-06-15 22:22
1
472 by adriancmf25
Thu, 2022-07-28 02:09
Normal topic Ligand docking cannot open the protein file
by swarekwood » Tue, 2017-10-17 08:17
1
1,289 by rmoretti
Tue, 2017-10-17 09:03
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,686 by jeliazkov
Fri, 2018-12-07 12:51
Normal topic The difference between the H1 regions of modeled camelid antibody and the crystal structure.
by Sunyp_IM » Sun, 2020-06-07 02:34
1
988 by nannemdp
Sun, 2020-06-07 08:01
Normal topic Connecting linkers
by Prasanth Kumar » Tue, 2014-05-06 00:53
1
2,735 by smlewis
Mon, 2014-05-12 08:32
Normal topic Symmetry definition for apolar helix
by vanrooyenjason » Tue, 2016-01-05 05:20
1
2,819 by rmoretti
Fri, 2016-04-29 09:21
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
1,225 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Expected density
by GabrielDucrocq » Thu, 2022-07-14 06:38
1
426 by matteoferla
Wed, 2022-07-20 10:50
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
2,152 by smlewis
Mon, 2014-04-21 06:47
Normal topic Make Fragments
by Run » Mon, 2013-11-11 05:31
1
2,408 by smlewis
Mon, 2014-04-21 06:48
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,365 by smlewis
Mon, 2014-04-21 06:47
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
1
1,139 by neelamraju.srid...
Wed, 2020-11-18 05:47
Normal topic Python2 script in Rosetta3.13
by ddhoyo » Wed, 2021-09-15 04:05
1
767 by matteoferla
Wed, 2021-09-15 06:04
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
1,950 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
1,197 by rmoretti
Mon, 2019-06-24 14:39
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
1,189 by danpf
Sun, 2020-08-30 22:23
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,784 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,584 by smlewis
Mon, 2017-02-06 06:57
Normal topic different value of score from rna_denovo and rna_score?
by yikanzhang » Wed, 2021-02-03 07:17
1
734 by CameronJA
Tue, 2021-06-15 20:02
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
3,242 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
2,115 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
2,194 by smlewis
Tue, 2017-08-15 23:19
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,289 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
1,182 by rmoretti
Wed, 2018-11-21 15:10
Normal topic polymer docking using rosetta scripts
by syntekabio2019 » Fri, 2020-11-27 01:51
1
827 by rmoretti
Fri, 2020-11-27 10:47
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,640 by Derek
Wed, 2016-04-27 01:31
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,450 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,546 by rmoretti
Fri, 2018-08-03 08:26
Normal topic kcenters_clustering_of_fragments
by bjharris » Mon, 2019-07-01 16:16
1
1,172 by bjharris
Wed, 2020-07-01 23:25
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,361 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
1,949 by rmoretti
Fri, 2015-10-02 12:30
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
1
940 by brspurri
Wed, 2021-01-20 08:11
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,557 by smlewis
Fri, 2016-11-11 08:33
Normal topic LoopModeler mover unable to determine cut point
by gszwabowski » Mon, 2020-06-01 13:12
1
1,145 by matteoferla
Thu, 2020-07-02 07:27
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,715 by rmoretti
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,606 by rmoretti
Mon, 2014-04-21 06:47
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,535 by rmoretti
Fri, 2017-03-24 13:39
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
1,170 by rmoretti
Wed, 2019-07-10 09:24
Normal topic get an increased energy after energy minimization when using different score functions for repacking and energy minimization
by xinmiaohe » Fri, 2020-02-07 11:59
1
1,039 by xinmiaohe
Fri, 2020-02-07 13:52
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,534 by smlewis
Fri, 2016-12-23 07:04
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
1,842 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot?
by Danielsebas » Tue, 2019-09-24 03:51
1
1,213 by smlewis
Tue, 2019-09-24 12:43
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
1,142 by smlewis
Fri, 2018-07-27 13:32
Normal topic can remodel add loops in one chain in multichain PDB structure?
by ksteczk » Fri, 2020-05-01 06:26
1
1,044 by matteoferla
Mon, 2020-05-04 01:43
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,529 by rmoretti
Mon, 2014-04-21 06:48
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,601 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
2,601 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
4,080 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
694 by vmulligan
Wed, 2021-04-28 12:59
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
3,130 by rmoretti
Mon, 2014-04-21 06:48
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
2,414 by rmoretti
Tue, 2014-11-04 10:33
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,384 by kamau
Wed, 2017-12-13 14:31
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
2,018 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
1,047 by everyday847
Fri, 2019-08-23 04:08
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
1,987 by rmoretti
Mon, 2015-05-25 12:30
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
1,358 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
1,147 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
1
2,098 by Payne
Tue, 2022-06-21 07:25
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
1,955 by rmoretti
Sat, 2015-06-20 20:07
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