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Rosetta 3 - Applications
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,414 |
by smlewis Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,410 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
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729 |
by matteoferla Mon, 2020-05-04 02:02 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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2,445 |
by rmoretti Mon, 2014-08-04 14:51 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
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1,528 |
by rmoretti Fri, 2015-01-02 11:06 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
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1,275 |
by benhardy Wed, 2020-09-30 04:24 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
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1,192 |
by rmoretti Fri, 2019-04-26 12:13 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
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2,470 |
by rmoretti Tue, 2016-01-05 08:35 |
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Mutating phosphorylated residues to "canonical" residues and vice versa by ValentinaSora » Mon, 2019-05-20 05:58 |
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1,486 |
by rmoretti Wed, 2019-07-10 09:22 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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840 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
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2,744 |
by rmoretti Mon, 2014-04-21 06:48 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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716 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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2,402 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand Docking with ARLS by cam11 » Thu, 2016-06-23 09:34 |
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1,651 |
by rmoretti Thu, 2016-06-23 10:55 |
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Error Interface analyser by jrcf » Thu, 2017-06-22 12:55 |
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1,348 |
by smlewis Thu, 2017-06-22 13:31 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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1,116 |
by rmoretti Fri, 2018-08-24 11:28 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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2,006 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,328 |
by rmoretti Mon, 2015-01-26 12:15 |
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Difference between movemap and -pivot_residues by aloshbau » Wed, 2016-02-24 13:21 |
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1,690 |
by rmoretti Wed, 2016-02-24 14:39 |
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weights for pH_protocol by fmerino » Wed, 2017-04-26 07:14 |
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1,542 |
by rmoretti Thu, 2017-04-27 07:10 |
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broker domain insertion by dhirajks » Sun, 2018-05-06 12:55 |
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1,102 |
by rmoretti Fri, 2018-05-18 12:28 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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920 |
by rmoretti Mon, 2019-06-24 14:42 |
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Help with enzyme design files by Wenithor » Thu, 2021-04-29 10:33 |
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487 |
by rmoretti Thu, 2021-04-29 10:44 |
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Antibody Docking application by Maryam_tabasinezhad » Sat, 2015-09-05 09:58 |
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1,882 |
by jadolfbr Wed, 2015-09-09 12:35 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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181 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Mon, 2016-07-25 13:35 |
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1,900 |
by gsuchunli Mon, 2016-07-25 13:56 |
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MPdocking I_sc by jrcf » Mon, 2017-07-31 16:10 |
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1,379 |
by rmoretti Thu, 2017-08-03 09:29 |
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Membrane Abinitio modeling error by jkyan007 » Thu, 2020-10-29 03:30 |
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647 |
by noahC_noahDo Tue, 2020-11-17 10:35 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
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2,114 |
by rmoretti Mon, 2014-04-21 06:48 |
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why is talaris2014 scoring fuction not used with ligand docking? by banshee » Fri, 2016-09-09 01:19 |
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1,630 |
by rmoretti Fri, 2016-09-09 07:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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3,774 |
by parmef Mon, 2014-04-21 06:47 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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1,665 |
by Pernille Fri, 2014-06-20 00:17 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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712 |
by rmoretti Mon, 2020-09-14 06:36 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
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3,172 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
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1,090 |
by danpf Fri, 2020-02-21 18:37 |
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Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
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2,271 |
by rmoretti Fri, 2020-07-10 09:59 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
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533 |
by rmoretti Fri, 2021-03-05 09:35 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
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92 |
by almeida85 Mon, 2022-05-02 05:05 |
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Place ligand in a pocket by sn » Fri, 2017-09-15 12:53 |
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1,415 |
by rmoretti Fri, 2017-09-15 13:11 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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893 |
by smlewis Mon, 2019-09-16 12:22 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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1,968 |
by rmoretti Mon, 2014-07-21 10:51 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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2,300 |
by rmoretti Wed, 2015-03-25 11:33 |
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Loop modeling/closure for many structures by sn » Mon, 2017-03-06 11:25 |
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1,213 |
by rmoretti Mon, 2017-03-06 12:39 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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993 |
by rmoretti Tue, 2019-04-16 11:07 |
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Fixing part of a ligand in dock-design by hssnzdh2 » Mon, 2015-11-23 17:14 |
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1,734 |
by rmoretti Tue, 2015-11-24 16:16 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
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1,958 |
by smlewis Mon, 2014-04-21 06:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
1 |
3,558 |
by rmoretti Mon, 2014-04-21 06:47 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
1,121 |
by rmoretti Fri, 2018-08-03 07:54 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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660 |
by leygkn Tue, 2020-09-22 22:46 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,122 |
by rmoretti Fri, 2014-08-15 08:06 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
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2,094 |
by smlewis Mon, 2014-04-21 06:47 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
1 |
1,986 |
by smlewis Mon, 2014-04-21 06:47 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
1 |
2,810 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
1 |
2,584 |
by lanselibai Wed, 2015-01-21 02:40 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
1 |
1,105 |
by rmoretti Tue, 2018-04-10 15:29 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,359 |
by rmoretti Mon, 2014-04-21 06:48 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,202 |
by rmoretti Sun, 2019-08-25 19:15 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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929 |
by danpf Wed, 2019-10-16 13:03 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,026 |
by smlewis Mon, 2014-04-21 06:47 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
1 |
1,514 |
by rmoretti Mon, 2017-07-03 09:17 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,307 |
by smlewis Mon, 2014-04-21 06:47 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
1 |
383 |
by nannemdp Mon, 2021-09-27 14:22 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,016 |
by smlewis Mon, 2014-04-21 06:47 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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1,837 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,362 |
by rmoretti Mon, 2019-06-24 13:46 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
1 |
529 |
by rmoretti Tue, 2021-05-18 07:21 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
1 |
1,276 |
by smlewis Thu, 2017-02-09 21:50 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
3,894 |
by rmoretti Mon, 2014-04-21 06:48 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
1 |
1,415 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
1 |
1,026 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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609 |
by rmoretti Wed, 2020-12-02 07:27 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
1 |
1,848 |
by tevang Mon, 2014-04-21 06:47 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
1 |
1,054 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
1 |
1,228 |
by rmoretti Mon, 2019-08-26 12:57 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
1 |
1,757 |
by smlewis Tue, 2017-02-21 14:10 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
1 |
761 |
by danpf Tue, 2020-07-14 10:27 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
1 |
1,441 |
by smlewis Thu, 2016-12-08 15:50 |
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dssp by MA » Thu, 2017-10-05 09:34 |
1 |
1,298 |
by rmoretti Tue, 2017-10-10 09:54 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
1 |
287 |
by dgm3 Fri, 2021-12-31 17:42 |
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Difference between relax and mimimize_with_cst by basvandenberg » Thu, 2012-02-09 00:16 |
1 |
2,341 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
1 |
548 |
by everyday847 Sun, 2021-04-04 12:48 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
1 |
1,261 |
by rmoretti Tue, 2018-04-10 15:34 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
1 |
758 |
by danpf Fri, 2020-02-21 17:05 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
1 |
742 |
by rmoretti Tue, 2021-04-20 13:27 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
1,674 |
by rmoretti Thu, 2014-10-23 13:55 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
1 |
1,619 |
by bernhardcl Tue, 2015-08-11 09:11 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
1 |
1,829 |
by rmoretti Wed, 2017-01-11 13:00 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,318 |
by rmoretti Mon, 2014-04-21 06:47 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
1 |
579 |
by bjharris Fri, 2021-01-22 17:34 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
1 |
3,993 |
by jadolfbr Mon, 2014-04-21 06:47 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
1 |
459 |
by everyday847 Mon, 2021-08-16 10:43 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,150 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,185 |
by rmoretti Mon, 2014-05-12 15:08 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
1 |
1,217 |
by smlewis Mon, 2018-05-07 11:42 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
1 |
1,739 |
by smlewis Mon, 2017-02-06 20:46 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
1,293 |
by smlewis Mon, 2017-12-04 12:18 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
1 |
2,043 |
by rmoretti Mon, 2014-04-21 06:48 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
2,570 |
by rmoretti Mon, 2015-05-25 11:49 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
1 |
995 |
by jadolfbr Fri, 2018-11-09 14:28 |
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