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Rosetta 3 - Applications
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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3,222 |
by rmoretti Mon, 2014-05-12 08:25 |
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How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"? by lanselibai » Sat, 2015-01-17 11:19 |
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2,999 |
by lanselibai Wed, 2015-01-21 02:40 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
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1,452 |
by rmoretti Tue, 2018-04-10 15:29 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,614 |
by rmoretti Sun, 2019-08-25 19:15 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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1,301 |
by danpf Wed, 2019-10-16 13:03 |
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Packstat application output by Vedasheersh » Mon, 2017-07-03 02:45 |
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1,907 |
by rmoretti Mon, 2017-07-03 09:17 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
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1,034 |
by nannemdp Mon, 2021-09-27 14:22 |
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unable to generate the span file with "mp_span_from_pdb.default.linuxgccrelease" from a PDB file by Sajjad » Wed, 2022-11-30 11:40 |
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3,725 |
by FJOM Wed, 2023-05-03 07:21 |
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Add missing residues in loop modeling by exchhattu » Thu, 2013-06-20 17:38 |
1 |
3,476 |
by smlewis Mon, 2014-04-21 06:48 |
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Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol? by cossio » Thu, 2015-02-05 07:10 |
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2,190 |
by rmoretti Mon, 2015-02-09 12:33 |
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Enzyme Design FlexBB Protocol Bug: DNA/RNA handling by kettner » Fri, 2019-06-14 14:16 |
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1,728 |
by rmoretti Mon, 2019-06-24 13:46 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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1,019 |
by rmoretti Tue, 2021-05-18 07:21 |
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Snugdock_error by luicui » Thu, 2017-02-09 21:06 |
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1,617 |
by smlewis Thu, 2017-02-09 21:50 |
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FixedBB design output no beta strands by tkoh » Fri, 2023-08-25 01:02 |
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126 |
by rmoretti Tue, 2023-08-29 20:13 |
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Using different number of 9-mers (UPDATED) by JadAbbass » Mon, 2017-08-28 07:20 |
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1,783 |
by rmoretti Mon, 2017-09-04 10:33 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
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1,399 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
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1,001 |
by rmoretti Wed, 2020-12-02 07:27 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
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2,758 |
by smlewis Mon, 2014-04-21 06:47 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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1,404 |
by rmoretti Fri, 2018-08-03 08:16 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,652 |
by rmoretti Mon, 2019-08-26 12:57 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,810 |
by rmoretti Mon, 2014-04-21 06:47 |
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Interface Analyzer Segmentation Fault by h_trasatti » Tue, 2017-02-21 12:48 |
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2,132 |
by smlewis Tue, 2017-02-21 14:10 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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1,165 |
by danpf Tue, 2020-07-14 10:27 |
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How to use base_pair_constraint for RNA as a constraint term？ by yels » Sat, 2021-04-03 01:19 |
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942 |
by everyday847 Sun, 2021-04-04 12:48 |
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Design with limited number of aminoacids at given position by sdh_h » Sun, 2016-12-04 03:44 |
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1,769 |
by smlewis Thu, 2016-12-08 15:50 |
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dssp by MA » Thu, 2017-10-05 09:34 |
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1,662 |
by rmoretti Tue, 2017-10-10 09:54 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
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1,018 |
by dgm3 Fri, 2021-12-31 17:42 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 13:41 |
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208 |
by rmoretti Fri, 2023-05-05 13:44 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
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2,854 |
by smlewis Mon, 2014-04-21 06:47 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,696 |
by jarod Mon, 2014-04-21 06:47 |
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splitfile.py by saladi » Fri, 2018-03-30 10:31 |
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1,606 |
by rmoretti Tue, 2018-04-10 15:34 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
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1,121 |
by danpf Fri, 2020-02-21 17:05 |
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Docking Analysis and Metrics in RosettaLigand. by sam_dc » Tue, 2021-04-20 03:54 |
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1,523 |
by rmoretti Tue, 2021-04-20 13:27 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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2,007 |
by rmoretti Thu, 2014-10-23 13:55 |
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Homology modelling applies alignment wrong by bernhardcl » Thu, 2015-08-06 09:39 |
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1,945 |
by bernhardcl Tue, 2015-08-11 09:11 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
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2,232 |
by rmoretti Wed, 2017-01-11 13:00 |
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[Solved] Resetting a pose with RigidBodyTransMover by bjharris » Wed, 2021-01-13 14:01 |
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925 |
by bjharris Fri, 2021-01-22 17:34 |
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duplex RNA by amir_tagh » Thu, 2021-08-05 06:34 |
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867 |
by everyday847 Mon, 2021-08-16 10:43 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
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3,104 |
by nannemdp Mon, 2022-11-28 09:39 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,245 |
by parmef Mon, 2014-04-21 06:47 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,501 |
by rmoretti Mon, 2014-05-12 15:08 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,567 |
by smlewis Mon, 2018-05-07 11:42 |
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Antibody Modelling by luicui » Mon, 2017-01-23 21:30 |
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2,100 |
by smlewis Mon, 2017-02-06 20:46 |
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blast database error by jessye » Sun, 2017-12-03 23:59 |
1 |
1,718 |
by smlewis Mon, 2017-12-04 12:18 |
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RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
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168 |
by skorro Fri, 2023-07-28 12:20 |
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Ligand creation by Prasanth Kumar » Fri, 2013-08-02 09:48 |
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2,327 |
by rmoretti Mon, 2014-04-21 06:48 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
1 |
2,348 |
by smlewis Mon, 2014-04-21 06:48 |
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SymDock with constraints by felipet » Thu, 2015-05-14 09:01 |
1 |
2,976 |
by rmoretti Mon, 2015-05-25 11:49 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,375 |
by jadolfbr Fri, 2018-11-09 14:28 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,211 |
by danpf Tue, 2019-09-03 10:15 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
1 |
1,060 |
by vmulligan Thu, 2020-05-21 18:33 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
1 |
2,328 |
by ytao Mon, 2014-04-21 06:48 |
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Executing the clean_pdb.py script by Rkfoury » Fri, 2015-02-20 10:16 |
1 |
3,707 |
by lanselibai Tue, 2015-02-24 02:36 |
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Enzyme Design - Score File by nwhoppe » Thu, 2016-04-07 15:11 |
1 |
2,013 |
by rmoretti Fri, 2016-04-08 07:39 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
1,497 |
by rmoretti Mon, 2019-06-24 13:43 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
1 |
1,465 |
by rmoretti Mon, 2018-01-15 16:14 |
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De novo water predictions using SPaDES by MNP1986 » Mon, 2019-03-25 07:53 |
1 |
1,622 |
by matteoferla Tue, 2020-08-04 09:30 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
1 |
2,453 |
by smlewis Mon, 2014-04-21 06:47 |
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how to run my openmp programe in rosetta3.3? by lihowe » Mon, 2012-02-27 23:43 |
1 |
2,298 |
by smlewis Mon, 2014-04-21 06:47 |
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Surface Docking Crash (continued) by dkozuch » Tue, 2017-09-12 06:18 |
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1,530 |
by rmoretti Tue, 2017-10-10 10:08 |
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AbinitioRelax - Error with flags by jmschu » Wed, 2018-11-21 17:36 |
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1,958 |
by rmoretti Fri, 2018-11-23 07:59 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
1 |
1,014 |
by taylorjones Wed, 2021-06-09 16:38 |
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Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
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2,256 |
by smlewis Mon, 2014-04-21 06:47 |
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No output with docking full protocol by JulienO » Mon, 2016-05-30 02:16 |
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1,868 |
by rmoretti Fri, 2016-06-17 10:24 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,166 |
by jadolfbr Mon, 2014-04-21 06:47 |
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JD2 MPI by jrcf » Wed, 2015-10-28 14:45 |
1 |
2,162 |
by rmoretti Sat, 2015-10-31 08:57 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
1 |
2,029 |
by rmoretti Tue, 2018-01-16 07:24 |
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is it necessary to always run relax before any Rosetta by mainzer » Fri, 2019-04-12 01:35 |
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1,776 |
by rmoretti Wed, 2019-07-10 09:47 |
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How to freeze ligand during FastRelax? by dnamkr » Thu, 2020-01-02 14:53 |
1 |
1,404 |
by aloshbau Fri, 2020-01-10 16:48 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
1 |
1,077 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,799 |
by smlewis Mon, 2014-04-21 06:47 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,330 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
1 |
1,985 |
by rmoretti Tue, 2015-01-13 07:44 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
1 |
2,234 |
by rmoretti Tue, 2015-11-24 16:07 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
1 |
1,411 |
by jadolfbr Fri, 2019-05-10 07:53 |
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error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease by xinmiaohe » Thu, 2020-01-30 22:09 |
1 |
1,812 |
by xinmiaohe Fri, 2020-01-31 08:23 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,732 |
by rmoretti Mon, 2014-04-21 06:48 |
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how to generate Fragments using up to 2001 structures only by oppopomoz » Sat, 2015-07-25 00:43 |
1 |
1,961 |
by rmoretti Thu, 2015-08-06 08:57 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
1 |
1,317 |
by rmoretti Wed, 2019-09-18 10:36 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
1 |
1,129 |
by brspurri Mon, 2021-01-18 18:14 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
1 |
1,216 |
by rmoretti Mon, 2019-08-26 12:17 |
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minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion by Kharlamov1317a » Mon, 2020-09-21 08:46 |
1 |
1,638 |
by Kharlamov1317a Wed, 2020-10-07 08:26 |
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Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides by user42 » Wed, 2021-07-21 20:34 |
1 |
855 |
by everyday847 Fri, 2021-07-30 13:26 |
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Small molecule dimer/trimer/etc docking by lukasz » Tue, 2022-10-04 06:49 |
1 |
1,408 |
by rmoretti Tue, 2022-10-04 07:57 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,337 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
1 |
1,940 |
by rmoretti Sat, 2017-04-15 13:30 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
1,527 |
by rmoretti Mon, 2019-06-24 15:19 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
1 |
1,113 |
by rmoretti Wed, 2020-03-04 09:56 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
736 |
by rmoretti Fri, 2022-07-15 13:50 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,439 |
by smlewis Mon, 2014-04-21 06:47 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
1 |
2,112 |
by jadolfbr Fri, 2014-10-31 08:45 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
1 |
1,328 |
by danpf Thu, 2019-10-10 09:55 |
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How to select docked models by Sunyp_IM » Mon, 2020-06-22 00:50 |
1 |
1,023 |
by ssrb Mon, 2020-06-22 13:12 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
1 |
1,285 |
by smlewis Tue, 2019-10-22 09:45 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,522 |
by rmoretti Mon, 2014-04-21 06:48 |
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Generating non-redundat dataset for loop models by dario.corrada » Wed, 2016-03-09 03:00 |
1 |
1,768 |
by smlewis Wed, 2016-03-09 04:11 |
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Model two domain protein by sn » Sat, 2017-05-06 13:21 |
1 |
1,799 |
by rmoretti Mon, 2017-05-15 08:54 |
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how to pick fragments for a transmembrane protein by tevang » Mon, 2012-05-28 06:52 |
1 |
2,144 |
by tevang Mon, 2014-04-21 06:47 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,609 |
by rmoretti Mon, 2014-04-21 06:48 |
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Two questions on the RosettaScripts flexbb-interfacedesign.xml by johnnytam100 » Fri, 2019-03-15 04:54 |
1 |
1,521 |
by rmoretti Fri, 2019-03-29 09:58 |
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