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Rosetta 3 - Applications

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Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,414 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
2,410 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Ligand docking at specific orientation
by ShiranBZ » Mon, 2020-04-13 20:46
1
729 by matteoferla
Mon, 2020-05-04 02:02
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,445 by rmoretti
Mon, 2014-08-04 14:51
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,528 by rmoretti
Fri, 2015-01-02 11:06
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,275 by benhardy
Wed, 2020-09-30 04:24
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,192 by rmoretti
Fri, 2019-04-26 12:13
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,470 by rmoretti
Tue, 2016-01-05 08:35
Normal topic Mutating phosphorylated residues to "canonical" residues and vice versa
by ValentinaSora » Mon, 2019-05-20 05:58
1
1,486 by rmoretti
Wed, 2019-07-10 09:22
Normal topic remodel ERROR: unrecognized mm_atom_type_name RGU
by daniloboskovic » Sat, 2020-02-22 11:55
1
840 by daniloboskovic
Tue, 2020-02-25 08:28
Normal topic Symmetric docking with multiple chains as asymmetric unit
by sarah29 » Tue, 2013-11-05 20:24
1
2,744 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Constraint generator
by Alison_Yajie » Wed, 2020-06-17 20:14
1
716 by Alison_Yajie
Wed, 2020-06-17 20:35
Normal topic How to calculate dG?
by yperez » Mon, 2012-10-22 07:28
1
2,402 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with ARLS
by cam11 » Thu, 2016-06-23 09:34
1
1,651 by rmoretti
Thu, 2016-06-23 10:55
Normal topic Error Interface analyser
by jrcf » Thu, 2017-06-22 12:55
1
1,348 by smlewis
Thu, 2017-06-22 13:31
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,116 by rmoretti
Fri, 2018-08-24 11:28
Normal topic ligand conformer generation for enzyme design
by bo » Mon, 2013-02-11 16:51
1
2,006 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,328 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,690 by rmoretti
Wed, 2016-02-24 14:39
Normal topic weights for pH_protocol
by fmerino » Wed, 2017-04-26 07:14
1
1,542 by rmoretti
Thu, 2017-04-27 07:10
Normal topic broker domain insertion
by dhirajks » Sun, 2018-05-06 12:55
1
1,102 by rmoretti
Fri, 2018-05-18 12:28
Normal topic The relax qustion of Rosetta VIP
by asbelx » Mon, 2019-06-10 07:52
1
920 by rmoretti
Mon, 2019-06-24 14:42
Normal topic Help with enzyme design files
by Wenithor » Thu, 2021-04-29 10:33
1
487 by rmoretti
Thu, 2021-04-29 10:44
Normal topic Antibody Docking application
by Maryam_tabasinezhad » Sat, 2015-09-05 09:58
1
1,882 by jadolfbr
Wed, 2015-09-09 12:35
Normal topic Modelling at defined pH - for pmutscan - pH:mode not working
by cagfa1 » Tue, 2022-03-15 04:05
1
181 by Rituparna_Saman...
Wed, 2022-03-23 11:21
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Mon, 2016-07-25 13:35
1
1,900 by gsuchunli
Mon, 2016-07-25 13:56
Normal topic MPdocking I_sc
by jrcf » Mon, 2017-07-31 16:10
1
1,379 by rmoretti
Thu, 2017-08-03 09:29
Normal topic Membrane Abinitio modeling error
by jkyan007 » Thu, 2020-10-29 03:30
1
647 by noahC_noahDo
Tue, 2020-11-17 10:35
Normal topic submit_NGK.py not creating output files
by nkato2 » Wed, 2013-08-28 23:37
1
2,114 by rmoretti
Mon, 2014-04-21 06:48
Normal topic why is talaris2014 scoring fuction not used with ligand docking?
by banshee » Fri, 2016-09-09 01:19
1
1,630 by rmoretti
Fri, 2016-09-09 07:47
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
3,774 by parmef
Mon, 2014-04-21 06:47
Normal topic Fastrelax problem
by Pernille » Tue, 2014-06-17 08:59
1
1,665 by Pernille
Fri, 2014-06-20 00:17
Normal topic 'standard.wts' does not exist
by almeida85 » Mon, 2020-09-14 02:26
1
712 by rmoretti
Mon, 2020-09-14 06:36
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
3,172 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
1,090 by danpf
Fri, 2020-02-21 18:37
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
2,271 by rmoretti
Fri, 2020-07-10 09:59
Normal topic Comparative Modeling Tutorial
by code_Monkey » Thu, 2021-03-04 12:35
1
533 by rmoretti
Fri, 2021-03-05 09:35
Normal topic Pepspec error
by almeida85 » Mon, 2022-05-02 04:07
1
92 by almeida85
Mon, 2022-05-02 05:05
Normal topic Place ligand in a pocket
by sn » Fri, 2017-09-15 12:53
1
1,415 by rmoretti
Fri, 2017-09-15 13:11
Normal topic How to analyse multiple silent files from "Abinitiorelax" output to find best models?
by Danielsebas » Tue, 2019-09-10 10:01
1
893 by smlewis
Mon, 2019-09-16 12:22
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,220 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,968 by rmoretti
Mon, 2014-07-21 10:51
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,300 by rmoretti
Wed, 2015-03-25 11:33
Normal topic Loop modeling/closure for many structures
by sn » Mon, 2017-03-06 11:25
1
1,213 by rmoretti
Mon, 2017-03-06 12:39
Normal topic input file for loop modeling
by Negarsardar » Tue, 2019-04-16 10:21
1
993 by rmoretti
Tue, 2019-04-16 11:07
Normal topic Fixing part of a ligand in dock-design
by hssnzdh2 » Mon, 2015-11-23 17:14
1
1,734 by rmoretti
Tue, 2015-11-24 16:16
Normal topic Problem with AtomPair constraint
by jarek » Tue, 2012-10-09 07:28
1
1,958 by smlewis
Mon, 2014-04-21 06:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,558 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,121 by rmoretti
Fri, 2018-08-03 07:54
Normal topic I need some help for using pHDock applications(histidine protonation / pH-dependent binding)
by leygkn » Tue, 2020-09-22 18:40
1
660 by leygkn
Tue, 2020-09-22 22:46
Normal topic Incorporating iron-sulfur cluster into ROSETTA applications
by Derek Smith » Thu, 2014-08-14 23:12
1
2,122 by rmoretti
Fri, 2014-08-15 08:06
Normal topic error mesages from RosettaDock
by AlanZhao » Mon, 2011-03-21 11:42
1
2,094 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to run my openmp programe in rosetta3.3?
by lihowe » Mon, 2012-02-27 23:43
1
1,986 by smlewis
Mon, 2014-04-21 06:47
Normal topic ambiguous constraints
by shrutikhare » Mon, 2014-05-12 04:42
1
2,810 by rmoretti
Mon, 2014-05-12 08:25
Normal topic How to build disulfide bond between two cysteine, i.e. change two "-SH" (sulfydryl) into "-S-S-"?
by lanselibai » Sat, 2015-01-17 11:19
1
2,584 by lanselibai
Wed, 2015-01-21 02:40
Normal topic Coding denovo prediction from density maps in PyRosetta
by ahmadkhalifa » Tue, 2018-04-10 11:43
1
1,105 by rmoretti
Tue, 2018-04-10 15:29
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,359 by rmoretti
Mon, 2014-04-21 06:48
Normal topic ProteinInterfaceDesign algorithm questions
by tsztain » Mon, 2019-02-18 14:10
1
1,202 by rmoretti
Sun, 2019-08-25 19:15
Normal topic denovo modelling on a virus-coat protein dimer
by aseem121 » Wed, 2019-10-16 06:55
1
929 by danpf
Wed, 2019-10-16 13:03
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,026 by smlewis
Mon, 2014-04-21 06:47
Normal topic Packstat application output
by Vedasheersh » Mon, 2017-07-03 02:45
1
1,514 by rmoretti
Mon, 2017-07-03 09:17
Normal topic score_jd2.linuxgccrelease documentation
by fglaser » Mon, 2011-08-01 04:08
1
3,307 by smlewis
Mon, 2014-04-21 06:47
Normal topic antibody - sequence position requested was 0
by jremmel » Mon, 2021-09-27 12:26
1
383 by nannemdp
Mon, 2021-09-27 14:22
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
4,016 by smlewis
Mon, 2014-04-21 06:47
Normal topic Output structures from docking_prepack_protocol: initial__*.pdb vs prepack__*.pdb, which one should I send to docking_protocol?
by cossio » Thu, 2015-02-05 07:10
1
1,837 by rmoretti
Mon, 2015-02-09 12:33
Normal topic Enzyme Design FlexBB Protocol Bug: DNA/RNA handling
by kettner » Fri, 2019-06-14 14:16
1
1,362 by rmoretti
Mon, 2019-06-24 13:46
Normal topic residue_energy_breakdown of a protein-ligand complex.
by sam_dc » Tue, 2021-05-18 04:45
1
529 by rmoretti
Tue, 2021-05-18 07:21
Normal topic Snugdock_error
by luicui » Thu, 2017-02-09 21:06
1
1,276 by smlewis
Thu, 2017-02-09 21:50
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
3,894 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Using different number of 9-mers (UPDATED)
by JadAbbass » Mon, 2017-08-28 07:20
1
1,415 by rmoretti
Mon, 2017-09-04 10:33
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
1,026 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms
by Corvin » Wed, 2020-12-02 04:00
1
609 by rmoretti
Wed, 2020-12-02 07:27
Normal topic how to pick fragments for a transmembrane protein
by tevang » Mon, 2012-05-28 06:52
1
1,848 by tevang
Mon, 2014-04-21 06:47
Normal topic Question on restraining receptor symmetry when docking ligand
by subha » Fri, 2018-07-06 21:59
1
1,054 by rmoretti
Fri, 2018-08-03 08:16
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,228 by rmoretti
Mon, 2019-08-26 12:57
Normal topic Interface Analyzer Segmentation Fault
by h_trasatti » Tue, 2017-02-21 12:48
1
1,757 by smlewis
Tue, 2017-02-21 14:10
Normal topic Warning: Fold tree is not set properly for density scoring
by ahansel » Mon, 2020-07-13 10:50
1
761 by danpf
Tue, 2020-07-14 10:27
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,441 by smlewis
Thu, 2016-12-08 15:50
Normal topic dssp
by MA » Thu, 2017-10-05 09:34
1
1,298 by rmoretti
Tue, 2017-10-10 09:54
Normal topic [LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point.
by dgm3 » Sun, 2021-12-26 18:32
1
287 by dgm3
Fri, 2021-12-31 17:42
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,341 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to use base_pair_constraint for RNA as a constraint term?
by yels » Sat, 2021-04-03 01:19
1
548 by everyday847
Sun, 2021-04-04 12:48
Normal topic splitfile.py
by saladi » Fri, 2018-03-30 10:31
1
1,261 by rmoretti
Tue, 2018-04-10 15:34
Normal topic How can I model ligands in comparative modeling
by Morrian_Lynn » Thu, 2020-02-20 09:57
1
758 by danpf
Fri, 2020-02-21 17:05
Normal topic Docking Analysis and Metrics in RosettaLigand.
by sam_dc » Tue, 2021-04-20 03:54
1
742 by rmoretti
Tue, 2021-04-20 13:27
Normal topic problem with modelling of protein (140 and 150 residues respectively)
by krlitros87 » Wed, 2014-10-22 09:39
1
1,674 by rmoretti
Thu, 2014-10-23 13:55
Normal topic Homology modelling applies alignment wrong
by bernhardcl » Thu, 2015-08-06 09:39
1
1,619 by bernhardcl
Tue, 2015-08-11 09:11
Normal topic comparative modeling of a homodimer
by banshee » Mon, 2017-01-09 18:34
1
1,829 by rmoretti
Wed, 2017-01-11 13:00
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,318 by rmoretti
Mon, 2014-04-21 06:47
Normal topic [Solved] Resetting a pose with RigidBodyTransMover
by bjharris » Wed, 2021-01-13 14:01
1
579 by bjharris
Fri, 2021-01-22 17:34
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
3,993 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic duplex RNA
by amir_tagh » Thu, 2021-08-05 06:34
1
459 by everyday847
Mon, 2021-08-16 10:43
Normal topic protein-protein docking
by cbala » Mon, 2011-04-18 09:15
1
2,150 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
2,185 by rmoretti
Mon, 2014-05-12 15:08
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,217 by smlewis
Mon, 2018-05-07 11:42
Normal topic Antibody Modelling
by luicui » Mon, 2017-01-23 21:30
1
1,739 by smlewis
Mon, 2017-02-06 20:46
Normal topic blast database error
by jessye » Sun, 2017-12-03 23:59
1
1,293 by smlewis
Mon, 2017-12-04 12:18
Normal topic Ligand creation
by Prasanth Kumar » Fri, 2013-08-02 09:48
1
2,043 by rmoretti
Mon, 2014-04-21 06:48
Normal topic SymDock with constraints
by felipet » Thu, 2015-05-14 09:01
1
2,570 by rmoretti
Mon, 2015-05-25 11:49
Normal topic Predicting the part of protein strcutrue
by ksy141 » Tue, 2018-10-16 11:47
1
995 by jadolfbr
Fri, 2018-11-09 14:28
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