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Rosetta 3 - Applications
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Modeling-Using RosettaCM by jlawrie » Wed, 2020-08-12 08:46 |
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795 |
by jlawrie Wed, 2020-08-12 08:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
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2,345 |
by jadolfbr Mon, 2014-04-21 06:48 |
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autoNOE peak lists by aep » Thu, 2015-08-06 06:15 |
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1,886 |
by sgourn Tue, 2015-08-18 18:25 |
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UnfoldedStateEnergyCalculator MPI Error by colin.walsh.brown » Mon, 2017-11-13 09:43 |
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1,556 |
by smlewis Mon, 2017-11-13 10:43 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
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981 |
by smlewis Fri, 2019-09-27 11:54 |
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How does the label in pdb files looks like when using ResiduePDBInfoHasLabel? by johnnytam100 » Fri, 2019-08-16 00:25 |
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1,342 |
by JackMaguire Fri, 2019-08-16 07:41 |
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Input structure by Soler » Mon, 2020-09-28 13:18 |
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789 |
by ssrb Tue, 2020-09-29 12:37 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,717 |
by jharamesh Mon, 2014-11-03 12:50 |
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Fast relax not working by eyong123 » Fri, 2017-04-21 06:06 |
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1,628 |
by rmoretti Fri, 2017-04-21 07:41 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,087 |
by vmulligan Thu, 2019-06-13 15:01 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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4,001 |
by rmoretti Mon, 2014-04-21 06:48 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
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2,915 |
by ic3reyes Mon, 2014-04-21 06:47 |
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,504 |
by rmoretti Tue, 2014-11-04 08:53 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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1,992 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease by cossio » Thu, 2015-09-03 08:46 |
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2,699 |
by rmoretti Fri, 2015-09-04 10:25 |
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output file in ddg calcualtion by malkeet.singh » Sun, 2017-12-03 07:59 |
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1,282 |
by malkeet.singh Wed, 2017-12-06 02:02 |
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Unexpected Error with RosettaCM - by terry » Fri, 2019-02-22 14:26 |
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2,801 |
by rmoretti Fri, 2019-03-29 12:25 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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1,785 |
by rmoretti Thu, 2014-08-28 09:42 |
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error--rosetta fragment‐based refinement protocol for refinement against EM density by gsuchunli » Wed, 2016-07-06 10:35 |
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1,767 |
by rmoretti Tue, 2016-07-12 08:56 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,333 |
by rmoretti Thu, 2018-09-20 09:23 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,020 |
by rmoretti Mon, 2019-08-26 12:03 |
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trRosetta - Nan occuring in Hbond calculation by y_atsmonraz » Mon, 2021-10-04 09:16 |
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653 |
by shivarawat115 Mon, 2022-04-11 16:10 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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1,964 |
by Ameya Tue, 2022-12-27 11:21 |
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loop modeling scoring by Nicky_Learning_... » Wed, 2015-05-13 20:00 |
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2,393 |
by rmoretti Mon, 2015-05-25 11:30 |
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Using Rmsd RosettaScripts filter with alignment files by bjharris » Sun, 2020-11-08 15:51 |
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789 |
by rmoretti Sun, 2020-11-08 18:56 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
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632 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,349 |
by smlewis Mon, 2014-04-21 06:47 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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1,009 |
by cryosky Mon, 2021-03-01 21:37 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
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2,549 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetry-aware Backrub? by gamacy » Fri, 2014-11-14 02:18 |
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1,867 |
by rmoretti Tue, 2014-11-18 09:10 |
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Protein Design by ac.research » Wed, 2017-02-15 19:25 |
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2,440 |
by cdbahl Sat, 2017-02-18 13:02 |
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Abinitio the Broker protocol by ac.research » Sun, 2019-03-24 03:56 |
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1,227 |
by rmoretti Fri, 2019-04-05 00:18 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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1,058 |
by JackMaguire Fri, 2019-11-22 13:45 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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1,735 |
by smlewis Mon, 2015-06-08 06:35 |
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Problem in redesign binding site by armart999 » Fri, 2016-10-14 01:55 |
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1,986 |
by rmoretti Fri, 2016-10-14 08:42 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,477 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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1,573 |
by AJVincelli Sun, 2018-11-25 11:29 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
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2,221 |
by rmoretti Wed, 2014-12-03 19:07 |
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Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
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1,287 |
by rmoretti Thu, 2019-05-09 15:40 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,390 |
by rmoretti Wed, 2018-02-21 15:21 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,038 |
by danpf Fri, 2020-02-21 18:23 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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472 |
by adriancmf25 Thu, 2022-07-28 02:09 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,289 |
by rmoretti Tue, 2017-10-17 09:03 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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1,686 |
by jeliazkov Fri, 2018-12-07 12:51 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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988 |
by nannemdp Sun, 2020-06-07 08:01 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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2,735 |
by smlewis Mon, 2014-05-12 08:32 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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2,819 |
by rmoretti Fri, 2016-04-29 09:21 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,225 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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426 |
by matteoferla Wed, 2022-07-20 10:50 |
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ligand conformer generation for enzyme design by bo » Mon, 2013-02-11 16:51 |
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2,152 |
by smlewis Mon, 2014-04-21 06:47 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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2,408 |
by smlewis Mon, 2014-04-21 06:48 |
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Filtering while clustering by David Hoover » Wed, 2011-03-30 07:03 |
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2,365 |
by smlewis Mon, 2014-04-21 06:47 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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1,139 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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767 |
by matteoferla Wed, 2021-09-15 06:04 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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1,950 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,197 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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1,189 |
by danpf Sun, 2020-08-30 22:23 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,784 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,584 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
1 |
734 |
by CameronJA Tue, 2021-06-15 20:02 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,242 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,115 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,194 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,289 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,182 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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827 |
by rmoretti Fri, 2020-11-27 10:47 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,640 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,450 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,546 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,172 |
by bjharris Wed, 2020-07-01 23:25 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,361 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,949 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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940 |
by brspurri Wed, 2021-01-20 08:11 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,557 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,145 |
by matteoferla Thu, 2020-07-02 07:27 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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3,715 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
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2,606 |
by rmoretti Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,535 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
1 |
1,170 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,039 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,534 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
1 |
1,842 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,213 |
by smlewis Tue, 2019-09-24 12:43 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,142 |
by smlewis Fri, 2018-07-27 13:32 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,044 |
by matteoferla Mon, 2020-05-04 01:43 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,529 |
by rmoretti Mon, 2014-04-21 06:48 |
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InterfaceAnalyzer -resfile by gw » Wed, 2011-11-02 16:01 |
1 |
2,601 |
by smlewis Mon, 2014-04-21 06:47 |
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How to calculate dG? by yperez » Mon, 2012-10-22 07:28 |
1 |
2,601 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,080 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
694 |
by vmulligan Wed, 2021-04-28 12:59 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,130 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
1 |
2,414 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,384 |
by kamau Wed, 2017-12-13 14:31 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
1 |
2,018 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
1 |
1,047 |
by everyday847 Fri, 2019-08-23 04:08 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,987 |
by rmoretti Mon, 2015-05-25 12:30 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,358 |
by jeliazkov Mon, 2019-06-17 06:03 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,147 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,098 |
by Payne Tue, 2022-06-21 07:25 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
1 |
1,955 |
by rmoretti Sat, 2015-06-20 20:07 |
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