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Rosetta 3 - Applications

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Normal topic Surface Docking Crash (continued)
by dkozuch » Tue, 2017-09-12 06:18
1
1,728 by rmoretti
Tue, 2017-10-10 10:08
Normal topic AbinitioRelax - Error with flags
by jmschu » Wed, 2018-11-21 17:36
1
2,207 by rmoretti
Fri, 2018-11-23 07:59
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:30
1
1,338 by taylorjones
Wed, 2021-06-09 16:38
Normal topic "Segmentation Fault" error occurred when Running a pilot job
by Cooben » Thu, 2024-04-18 19:47
1
186 by Cooben
Thu, 2024-04-25 01:46
Normal topic No output with docking full protocol
by JulienO » Mon, 2016-05-30 02:16
1
2,098 by rmoretti
Fri, 2016-06-17 10:24
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
3,340 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic JD2 MPI
by jrcf » Wed, 2015-10-28 14:45
1
2,410 by rmoretti
Sat, 2015-10-31 08:57
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
2,246 by rmoretti
Tue, 2018-01-16 07:24
Normal topic is it necessary to always run relax before any Rosetta
by mainzer » Fri, 2019-04-12 01:35
1
2,073 by rmoretti
Wed, 2019-07-10 09:47
Normal topic How to freeze ligand during FastRelax?
by dnamkr » Thu, 2020-01-02 14:53
1
1,659 by aloshbau
Fri, 2020-01-10 16:48
Normal topic pepspec anchor dock
by Andre Serobian » Tue, 2020-07-28 05:51
1
1,268 by Andre Serobian
Tue, 2020-07-28 23:26
Normal topic I want to refine my pdb file,but it has multiple breaks or has multiple loops missing resi
by Edward » Sat, 2023-11-25 04:58
1
420 by Edward
Sat, 2023-11-25 05:17
Normal topic Filtering while clustering
by David Hoover » Wed, 2011-03-30 07:03
1
2,745 by smlewis
Mon, 2014-04-21 06:47
Normal topic profit program in antibody design
by tzhou » Tue, 2013-10-15 23:29
1
2,911 by rmoretti
Mon, 2014-04-21 06:48
Normal topic how to generate Fragments using up to 2001 structures only
by oppopomoz » Sat, 2015-07-25 00:43
1
2,168 by rmoretti
Thu, 2015-08-06 08:57
Normal topic Can I use rosetta binaries built in one linux system to another linux system?
by Danielsebas » Wed, 2019-09-18 06:49
1
1,530 by rmoretti
Wed, 2019-09-18 10:36
Normal topic [Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence
by brspurri » Mon, 2021-01-04 16:46
1
1,399 by brspurri
Mon, 2021-01-18 18:14
Normal topic PDB file name too long to be handled by file system
by dave » Thu, 2019-08-08 03:10
1
1,433 by rmoretti
Mon, 2019-08-26 12:17
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
2,009 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic Stepwise Monte Carlo - errors with ResidueTypeSet and Disulfides
by user42 » Wed, 2021-07-21 20:34
1
1,084 by everyday847
Fri, 2021-07-30 13:26
Normal topic Small molecule dimer/trimer/etc docking
by lukasz » Tue, 2022-10-04 06:49
1
1,818 by rmoretti
Tue, 2022-10-04 07:57
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
4,652 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic modeling 4 linkers between 2 domains
by pdbb » Thu, 2013-05-16 08:23
1
2,512 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
2,169 by rmoretti
Tue, 2015-01-13 07:44
Normal topic cluster.linuxgccrelease Killed error
by samuelrpita » Fri, 2015-11-20 05:56
1
2,451 by rmoretti
Tue, 2015-11-24 16:07
Normal topic loop design for Conformational bias
by dhirajks » Thu, 2019-05-09 21:22
1
1,625 by jadolfbr
Fri, 2019-05-10 07:53
Normal topic error: Unable to open weights/patch file in using ddg_monomer.linuxgccrelease
by xinmiaohe » Thu, 2020-01-30 22:09
1
2,085 by xinmiaohe
Fri, 2020-01-31 08:23
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
2,150 by rmoretti
Sat, 2017-04-15 13:30
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,814 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Ddg filter threshold value?
by chrisHKL » Fri, 2020-02-28 15:01
1
1,334 by rmoretti
Wed, 2020-03-04 09:56
Normal topic shape complementarity
by holdenj » Fri, 2022-07-15 13:24
1
1,152 by rmoretti
Fri, 2022-07-15 13:50
Normal topic Script for loop modeling: how to define loop sequence
by batch2k » Thu, 2014-10-30 12:58
1
2,310 by jadolfbr
Fri, 2014-10-31 08:45
Normal topic "install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage
by Corvin » Thu, 2019-10-10 02:20
1
1,605 by danpf
Thu, 2019-10-10 09:55
Normal topic How to select docked models
by Sunyp_IM » Mon, 2020-06-22 00:50
1
1,249 by ssrb
Mon, 2020-06-22 13:12
Normal topic antibody protocol fails
by hamedkhakzad » Mon, 2019-08-19 07:43
1
1,510 by smlewis
Tue, 2019-10-22 09:45
Normal topic interface_delta ligand_docking
by Prasanth Kumar » Tue, 2013-06-18 08:37
1
2,721 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Generating non-redundat dataset for loop models
by dario.corrada » Wed, 2016-03-09 03:00
1
1,958 by smlewis
Wed, 2016-03-09 04:11
Normal topic Model two domain protein
by sn » Sat, 2017-05-06 13:21
1
2,022 by rmoretti
Mon, 2017-05-15 08:54
Normal topic modeling missing linker in a protein
by Isaure de Beauchene » Fri, 2012-05-11 10:13
1
3,505 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,778 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Two questions on the RosettaScripts flexbb-interfacedesign.xml
by johnnytam100 » Fri, 2019-03-15 04:54
1
1,761 by rmoretti
Fri, 2019-03-29 09:58
Normal topic Error with FlexPepDock
by aloshbau » Sat, 2013-08-10 11:51
1
2,743 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Snugdock+ensembledock usage
by Anouk » Mon, 2014-09-22 08:09
1
3,169 by jadolfbr
Mon, 2014-10-20 13:42
Normal topic Should I trust the score output from relax used with a protein complex?
by cossio » Thu, 2015-05-07 06:08
1
2,245 by rmoretti
Mon, 2015-05-25 12:37
Normal topic C-termini remodelling of dimeric structure removes second chain
by LeonhardJS » Wed, 2021-10-13 06:23
1
1,121 by LeonhardJS
Fri, 2021-11-12 01:20
Normal topic Using residue patches in AbinitioRelax
by kent » Fri, 2018-11-02 11:19
1
1,990 by rmoretti
Wed, 2018-11-21 15:40
Normal topic membrane modeling error
by benniu2004 » Mon, 2013-07-01 17:59
1
2,558 by smlewis
Mon, 2014-04-21 06:48
Normal topic Failed glycine check when running RosettaRemodel to build disulfide
by cheyuk » Fri, 2014-06-27 02:31
1
2,224 by everyday847
Sun, 2014-09-28 21:16
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
2,610 by rmoretti
Wed, 2015-03-25 12:39
Normal topic sequence design to enhance Fc / Fc-g Receptor binding
by jarod » Tue, 2017-05-23 09:00
1
1,810 by jadolfbr
Thu, 2017-06-01 10:00
Normal topic contents of span file
by tevang » Mon, 2013-04-15 05:01
1
2,584 by smlewis
Mon, 2014-04-21 06:47
Normal topic heads up for constraints using GAUSSIANFUNC
by attesor » Thu, 2015-10-22 07:30
1
2,015 by smlewis
Thu, 2015-10-22 08:04
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
2,244 by smlewis
Tue, 2017-02-21 07:58
Normal topic PEPSPEC
by Neeraj » Wed, 2018-01-03 02:24
1
1,858 by Andre Serobian
Wed, 2020-07-08 04:44
Normal topic loopmodel issue
by chiendarret » Fri, 2012-01-27 00:51
1
3,190 by smlewis
Mon, 2014-04-21 06:47
Normal topic homology membrane modeling demo in rosetta 3.5
by rlwoltz » Mon, 2013-09-09 10:26
1
2,931 by smlewis
Mon, 2014-04-21 06:48
Normal topic Syntax to extract PDB files from a silent file
by lanselibai » Fri, 2014-09-26 13:48
1
3,991 by lanselibai
Fri, 2014-09-26 14:58
Normal topic Full Protocol
by shekhar » Fri, 2013-10-04 01:07
1
3,091 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking with loop rebuilding
by kxiao » Sun, 2015-06-28 19:37
1
2,300 by rmoretti
Fri, 2015-07-03 14:41
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
2,395 by rmoretti
Wed, 2016-11-30 07:46
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
2,023 by rmoretti
Tue, 2018-12-04 08:55
Normal topic ERROR: APBS failed to generate the result file.
by bhavranek » Sat, 2021-12-18 11:01
1
1,175 by bhavranek
Sun, 2021-12-26 21:05
Normal topic InterfaceAnalyzer -resfile
by gw » Wed, 2011-11-02 16:01
1
2,967 by smlewis
Mon, 2014-04-21 06:47
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
1,552 by rmoretti
Wed, 2020-09-16 22:11
Normal topic PDB file showing error - missing heavyatom: OXT on residue LYS:CtermProteinFull 59
by intomybioverse » Wed, 2024-05-15 23:38
1
31 by rmoretti
Thu, 2024-05-16 08:29
Normal topic Unsatisfied interface H-bond in Ligand docking
by Prasanth Kumar » Thu, 2013-07-18 12:04
1
4,239 by rmoretti
Mon, 2014-04-21 06:48
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
2,201 by rmoretti
Sun, 2014-07-27 10:48
Normal topic cluster error
by sudhar » Fri, 2011-06-17 05:58
1
3,048 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Options for Enzdes RosettaScripts
by joeg » Wed, 2014-03-12 09:28
1
3,030 by rmoretti
Thu, 2014-03-13 08:04
Normal topic Segmentation fault when running Abinito Relax
by Hongtham » Mon, 2014-12-15 07:16
1
3,223 by rmoretti
Fri, 2015-01-02 11:45
Normal topic Protein/Protein Ddg demo: How to write predicted mutant structures?
by cossio » Wed, 2015-11-04 20:14
1
1,999 by rmoretti
Tue, 2015-11-10 11:10
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
2,207 by rmoretti
Tue, 2018-01-30 07:51
Normal topic Highly negative total score
by Ruchi_P_Jain » Wed, 2019-04-24 19:55
1
1,809 by nannemdp
Thu, 2019-04-25 07:58
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
2,934 by ssrb
Fri, 2020-08-14 09:18
Normal topic CartesianRefiner compilation problem
by DmitriiN » Tue, 2015-12-15 08:52
1
2,137 by rmoretti
Tue, 2015-12-15 09:48
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
1,153 by jlawrie
Wed, 2020-08-12 08:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,677 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic autoNOE peak lists
by aep » Thu, 2015-08-06 06:15
1
2,312 by sgourn
Tue, 2015-08-18 18:25
Normal topic UnfoldedStateEnergyCalculator MPI Error
by colin.walsh.brown » Mon, 2017-11-13 09:43
1
2,078 by smlewis
Mon, 2017-11-13 10:43
Normal topic Energy function and iteration script files
by michelleqyh » Fri, 2019-09-27 09:06
1
1,323 by smlewis
Fri, 2019-09-27 11:54
Normal topic How does the label in pdb files looks like when using ResiduePDBInfoHasLabel?
by johnnytam100 » Fri, 2019-08-16 00:25
1
1,781 by JackMaguire
Fri, 2019-08-16 07:41
Normal topic Input structure
by Soler » Mon, 2020-09-28 13:18
1
1,166 by ssrb
Tue, 2020-09-29 12:37
Normal topic Ligand docking: ERROR: set_atom_base: atoms must be bonded!
by mengzhang » Mon, 2014-05-12 12:36
1
3,057 by jharamesh
Mon, 2014-11-03 12:50
Normal topic Fast relax not working
by eyong123 » Fri, 2017-04-21 06:06
1
2,010 by rmoretti
Fri, 2017-04-21 07:41
Normal topic AddHelixSequenceConstraints Mover2
by Negarsardar » Sat, 2019-06-01 01:54
1
1,499 by vmulligan
Thu, 2019-06-13 15:01
Normal topic several question in mpensemble dock
by lluoto » Tue, 2024-03-12 07:54
1
241 by lluoto
Tue, 2024-03-19 05:28
Normal topic protein-protein docking with flexible backbone
by tim » Fri, 2013-12-20 05:52
1
4,432 by rmoretti
Mon, 2014-04-21 06:48
Normal topic "Segmentation fault" for "minirosetta.linuxgccrelease"
by lanselibai » Tue, 2014-11-04 03:17
1
2,891 by rmoretti
Tue, 2014-11-04 08:53
Normal topic ERROR: Rosetta does not recognize the property: SIDECHAIN_THIOL, when running minimize_with_cst.linuxgccrelease
by cossio » Thu, 2015-09-03 08:46
1
3,217 by rmoretti
Fri, 2015-09-04 10:25
Normal topic output file in ddg calcualtion
by malkeet.singh » Sun, 2017-12-03 07:59
1
1,640 by malkeet.singh
Wed, 2017-12-06 02:02
Normal topic Unexpected Error with RosettaCM -
by terry » Fri, 2019-02-22 14:26
1
3,388 by rmoretti
Fri, 2019-03-29 12:25
Normal topic Problem in using "loopmodel" application to add missing residues
by sushreet » Wed, 2014-08-27 12:43
1
2,164 by rmoretti
Thu, 2014-08-28 09:42
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Wed, 2016-07-06 10:35
1
2,124 by rmoretti
Tue, 2016-07-12 08:56
Normal topic Question on Designing with NCAAs
by salvatta » Mon, 2018-09-10 10:09
1
1,719 by rmoretti
Thu, 2018-09-20 09:23
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
1,445 by rmoretti
Mon, 2019-08-26 12:03
Normal topic trRosetta - Nan occuring in Hbond calculation
by y_atsmonraz » Mon, 2021-10-04 09:16
1
1,223 by shivarawat115
Mon, 2022-04-11 16:10
Normal topic AbinitioRelax Disulfide Bonds are not being retained
by brspurri » Wed, 2011-09-28 13:55
1
4,487 by parmef
Mon, 2014-04-21 06:47
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
1,446 by cryosky
Mon, 2021-03-01 21:37
Normal topic Symmetry-aware Backrub?
by gamacy » Fri, 2014-11-14 02:18
1
2,257 by rmoretti
Tue, 2014-11-18 09:10
Normal topic Protein Design
by ac.research » Wed, 2017-02-15 19:25
1
2,859 by cdbahl
Sat, 2017-02-18 13:02
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