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Rosetta 3 - Applications
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"Segmentation fault" for "minirosetta.linuxgccrelease" by lanselibai » Tue, 2014-11-04 03:17 |
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2,501 |
by rmoretti Tue, 2014-11-04 08:53 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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6,063 |
by rmoretti Mon, 2014-11-03 15:47 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,056 |
by lanselibai Mon, 2014-11-03 13:15 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
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2,714 |
by jharamesh Mon, 2014-11-03 12:50 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,015 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
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1,924 |
by jadolfbr Fri, 2014-10-31 08:45 |
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problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
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1,835 |
by rmoretti Thu, 2014-10-23 13:55 |
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Syntax for the alignment file in "minirosetta comparative modeling" by lanselibai » Thu, 2014-10-16 15:29 |
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4,036 |
by lanselibai Thu, 2014-10-23 03:26 |
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ab initio modelling - what to do next? by krlitros87 » Thu, 2014-10-16 13:05 |
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2,965 |
by krlitros87 Wed, 2014-10-22 09:31 |
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Snugdock+ensembledock usage by Anouk » Mon, 2014-09-22 08:09 |
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2,673 |
by jadolfbr Mon, 2014-10-20 13:42 |
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What are "-nstruct" and "cluster_histogram.txt" for "clustering.py"? by lanselibai » Fri, 2014-10-17 06:06 |
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20,518 |
by rmoretti Fri, 2014-10-17 10:17 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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6,773 |
by lanselibai Fri, 2014-10-17 05:10 |
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How to eliminate "NUL"s when scoring PDBs? by lanselibai » Tue, 2014-10-14 10:04 |
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2,587 |
by lanselibai Fri, 2014-10-17 03:36 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,798 |
by lanselibai Wed, 2014-10-15 03:52 |
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"score vs RMSD plots" & "cluster models" by lanselibai » Thu, 2014-09-25 06:51 |
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21,535 |
by lanselibai Wed, 2014-10-15 01:54 |
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Use "loopmodel.linuxgccrelease" CCD to build missing residue positions by lanselibai » Sun, 2014-10-12 09:00 |
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3,049 |
by lanselibai Mon, 2014-10-13 10:10 |
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Membrane homology modeling loop building gives very strange outputs by chelsell » Tue, 2014-09-30 14:46 |
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2,750 |
by chelsell Wed, 2014-10-08 12:25 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,612 |
by Pernille Wed, 2014-10-08 10:41 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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5,185 |
by jadolfbr Tue, 2014-10-07 16:05 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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9,581 |
by lanselibai Tue, 2014-10-07 02:58 |
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clustering by ays » Tue, 2014-09-30 08:26 |
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2,880 |
by rmoretti Mon, 2014-10-06 16:00 |
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How to sort a Silent File based on RMSD by JadAbbass » Sun, 2013-08-04 14:40 |
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3,096 |
by lanselibai Mon, 2014-10-06 15:30 |
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Missing "Bio.PDB" module when running "remove_loop_coords.py" by lanselibai » Mon, 2014-09-29 04:34 |
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9,138 |
by lanselibai Wed, 2014-10-01 02:13 |
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flexpepdock_score_only by ays » Sun, 2014-09-21 06:17 |
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2,253 |
by ays Tue, 2014-09-30 08:31 |
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Syntax to build a silent file by lanselibai » Fri, 2014-09-26 09:13 |
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8,622 |
by lanselibai Tue, 2014-09-30 03:45 |
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Some wrong with the flag "-l" for score_jd2.linuxgccrelease by lanselibai » Mon, 2014-09-29 02:29 |
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3,902 |
by lanselibai Tue, 2014-09-30 02:28 |
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Failed glycine check when running RosettaRemodel to build disulfide by cheyuk » Fri, 2014-06-27 02:31 |
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1,854 |
by everyday847 Sun, 2014-09-28 21:16 |
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Syntax to extract PDB files from a silent file by lanselibai » Fri, 2014-09-26 13:48 |
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3,523 |
by lanselibai Fri, 2014-09-26 14:58 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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4,497 |
by lanselibai Wed, 2014-09-24 13:21 |
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Fixing and Building disulfide bonds in homology modeling by kamau » Wed, 2014-09-24 11:33 |
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2,222 |
by kamau Wed, 2014-09-24 11:35 |
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fixing disulfides in homolgy modeling by pdbb » Wed, 2013-02-13 11:43 |
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10,571 |
by kamau Mon, 2014-09-22 09:39 |
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Problem in using "loopmodel" application to add missing residues by sushreet » Wed, 2014-08-27 12:43 |
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1,781 |
by rmoretti Thu, 2014-08-28 09:42 |
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Error in using “loopmodel” for selective rebuilding by sushreet » Mon, 2014-07-14 11:57 |
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2,479 |
by sushreet Tue, 2014-08-26 13:02 |
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Incorporating iron-sulfur cluster into ROSETTA applications by Derek Smith » Thu, 2014-08-14 23:12 |
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2,320 |
by rmoretti Fri, 2014-08-15 08:06 |
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FlexPepDock Concatenation by cam11 » Mon, 2014-08-11 07:39 |
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2,431 |
by cam11 Wed, 2014-08-13 10:06 |
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ab initio membrane error (frag9 file...) by almeida » Mon, 2012-07-30 08:53 |
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8,394 |
by rmoretti Tue, 2014-08-12 08:15 |
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Abinitio error: ERROR: Value of inactive option accessed: -in:file:frag9 by rlwoltz » Tue, 2012-09-18 14:04 |
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14,373 |
by RAGHURAMAN Fri, 2014-08-08 02:19 |
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HBNet and RosettaScripts by protos_heis » Tue, 2014-08-05 06:05 |
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3,664 |
by protos_heis Tue, 2014-08-05 12:47 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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2,621 |
by rmoretti Mon, 2014-08-04 14:51 |
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Pre-packing a model for SWA loop building by franfdez » Sun, 2014-07-27 02:16 |
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2,637 |
by franfdez Mon, 2014-07-28 01:04 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
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1,841 |
by rmoretti Sun, 2014-07-27 10:48 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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2,150 |
by rmoretti Mon, 2014-07-21 10:51 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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2,303 |
by felipet Thu, 2014-07-17 10:13 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,000 |
by smlewis Mon, 2014-07-07 11:58 |
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Fastrelax problem by Pernille » Fri, 2014-06-20 00:16 |
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3,388 |
by Pernille Thu, 2014-07-03 07:21 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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4,327 |
by rmoretti Wed, 2014-07-02 16:55 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,206 |
by felipet Wed, 2014-07-02 10:23 |
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how to reconstruct the whole complex after symmetric docking by Anonymous » Tue, 2012-07-03 02:44 |
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2,876 |
by felipet Wed, 2014-07-02 07:26 |
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Fastrelax problem by Pernille » Tue, 2014-06-17 08:59 |
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1,823 |
by Pernille Fri, 2014-06-20 00:17 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
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4,490 |
by rmoretti Tue, 2014-06-17 08:51 |
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PIKAA in resfile does not mutate Cys in disulfide bond to specified residue by attesor » Fri, 2014-03-14 07:53 |
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3,040 |
by attesor Mon, 2014-06-16 07:34 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
2,804 |
by ahonegger Fri, 2014-06-06 09:31 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
4 |
4,052 |
by kxiao Thu, 2014-06-05 08:37 |
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Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,298 |
by mdidonato Wed, 2014-06-04 14:55 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
0 |
1,294 |
by msk Tue, 2014-06-03 11:09 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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1,949 |
by rmoretti Mon, 2014-05-26 09:29 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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5,065 |
by afmo Thu, 2014-05-22 01:19 |
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High energies after loopmodel run by michki » Thu, 2014-05-08 05:14 |
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3,458 |
by rmoretti Mon, 2014-05-12 15:16 |
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Ligand docking: ERROR: set_atom_base: atoms must be bonded! by mengzhang » Mon, 2014-05-12 12:36 |
1 |
2,342 |
by rmoretti Mon, 2014-05-12 15:08 |
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Unable to set up interface foldtree because there are no movable jumps - (antibody/antigen docking) by snorp » Mon, 2014-04-14 13:01 |
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3,423 |
by jadolfbr Mon, 2014-05-12 10:41 |
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How do I explicitly add residues for design in the interface optimization script? by ahonegger » Mon, 2014-05-12 07:40 |
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3,042 |
by ahonegger Mon, 2014-05-12 09:08 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,545 |
by rmoretti Mon, 2014-05-12 08:45 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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2,734 |
by smlewis Mon, 2014-05-12 08:32 |
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ambiguous constraints by shrutikhare » Mon, 2014-05-12 04:42 |
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3,002 |
by rmoretti Mon, 2014-05-12 08:25 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
12,168 |
by rmoretti Thu, 2014-04-24 14:43 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
6,201 |
by rmoretti Mon, 2014-04-21 10:47 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
4 |
4,862 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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do mpi apps share memory? by fred » Thu, 2014-01-23 11:49 |
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2,963 |
by fred Mon, 2014-04-21 06:48 |
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Abinito for Multimers by Prasanth Kumar » Wed, 2014-01-22 17:45 |
2 |
3,051 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
6 |
7,025 |
by rmoretti Mon, 2014-04-21 06:48 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
4 |
4,559 |
by fred Mon, 2014-04-21 06:48 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
6 |
5,629 |
by tfliu Mon, 2014-04-21 06:48 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,441 |
by rmoretti Mon, 2014-04-21 06:48 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
3,999 |
by rmoretti Mon, 2014-04-21 06:48 |
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FlexPepDock and total score problem by tkellici » Fri, 2014-01-17 06:07 |
2 |
2,871 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
1 |
3,128 |
by rmoretti Mon, 2014-04-21 06:48 |
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profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,526 |
by rmoretti Mon, 2014-04-21 06:48 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,147 |
by Ashafix Mon, 2014-04-21 06:48 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,344 |
by jadolfbr Mon, 2014-04-21 06:48 |
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MaxSub and MaxSub2.0 by JadAbbass » Tue, 2013-10-15 13:36 |
2 |
3,224 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
1 |
2,407 |
by smlewis Mon, 2014-04-21 06:48 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
5 |
5,346 |
by jadolfbr Mon, 2014-04-21 06:48 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
3 |
4,375 |
by rmoretti Mon, 2014-04-21 06:48 |
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Symmetric docking with multiple chains as asymmetric unit by sarah29 » Tue, 2013-11-05 20:24 |
1 |
2,917 |
by rmoretti Mon, 2014-04-21 06:48 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,290 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
6,829 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
1 |
2,196 |
by smlewis Mon, 2014-04-21 06:48 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
4,712 |
by wsgosal Mon, 2014-04-21 06:48 |
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Error with FlexPepDock by aloshbau » Sat, 2013-08-10 11:51 |
1 |
2,335 |
by rmoretti Mon, 2014-04-21 06:48 |
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homology membrane modeling demo in rosetta 3.5 by rlwoltz » Mon, 2013-09-09 10:26 |
1 |
2,614 |
by smlewis Mon, 2014-04-21 06:48 |
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Full Protocol by shekhar » Fri, 2013-10-04 01:07 |
1 |
2,741 |
by rmoretti Mon, 2014-04-21 06:48 |
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usage of score3 by Run » Sat, 2013-09-28 02:06 |
16 |
15,226 |
by jadolfbr Mon, 2014-04-21 06:48 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
3 |
3,865 |
by rmoretti Mon, 2014-04-21 06:48 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
2 |
4,251 |
by lkrathn Mon, 2014-04-21 06:48 |
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Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,473 |
by mumdonar Mon, 2014-04-21 06:48 |
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submit_NGK.py not creating output files by nkato2 » Wed, 2013-08-28 23:37 |
1 |
2,247 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
5,448 |
by jadolfbr Mon, 2014-04-21 06:48 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
7 |
6,636 |
by rmoretti Mon, 2014-04-21 06:48 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
7 |
6,578 |
by rmoretti Mon, 2014-04-21 06:48 |
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A problem with RosettaLigand by Rosettasz » Fri, 2013-07-19 16:09 |
16 |
16,764 |
by Rosettasz Mon, 2014-04-21 06:48 |
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