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Rosetta 3 - Applications
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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1,121 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
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2,398 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,118 |
by danpf Fri, 2020-02-21 18:23 |
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protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
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4,117 |
by rmoretti Mon, 2014-04-21 06:48 |
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Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
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1,722 |
by rmoretti Tue, 2015-11-10 11:10 |
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ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
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1,499 |
by rmoretti Sun, 2019-08-25 19:15 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,265 |
by rmoretti Wed, 2018-11-21 15:10 |
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ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
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2,920 |
by ahonegger Fri, 2014-06-06 09:31 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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769 |
by Corvin Wed, 2020-12-30 09:21 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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864 |
by matteoferla Wed, 2021-09-15 06:04 |
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Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
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1,587 |
by orionshih Wed, 2019-06-26 03:54 |
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Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
2,417 |
by danbo Wed, 2021-12-22 23:51 |
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Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
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1,417 |
by rmoretti Thu, 2018-09-20 09:23 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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1,307 |
by rmoretti Fri, 2018-08-03 08:16 |
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Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
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604 |
by terabithia2011 Mon, 2021-01-25 09:24 |
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Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
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9,894 |
by lanselibai Tue, 2014-10-07 02:58 |
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RAbD with N-term，Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
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2,296 |
by CordycepsLin Wed, 2022-02-09 19:39 |
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radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
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1,468 |
by smlewis Mon, 2018-05-07 11:42 |
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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4,167 |
by rmoretti Mon, 2017-02-20 08:09 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
4,591 |
by rmoretti Tue, 2016-07-12 09:35 |
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References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
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2,622 |
by rmoretti Wed, 2015-03-25 11:33 |
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refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
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2,841 |
by banshee Mon, 2016-09-12 23:41 |
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regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
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2,430 |
by shrutikhare Fri, 2014-04-18 23:11 |
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Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
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2,310 |
by Martin Floor Mon, 2017-05-15 11:13 |
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relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
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2,532 |
by rmoretti Tue, 2018-02-06 09:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
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5,915 |
by franfdez Mon, 2014-04-21 06:47 |
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relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
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1,824 |
by smlewis Thu, 2020-05-21 21:05 |
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Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
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2,224 |
by smlewis Fri, 2018-09-14 10:34 |
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relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
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3,386 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
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870 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
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738 |
by Martin Floor Wed, 2022-01-26 07:46 |
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Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
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3,250 |
by brspurri Sat, 2017-08-26 07:08 |
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relax job failed by albumns » Sat, 2014-07-26 00:21 |
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1,923 |
by rmoretti Sun, 2014-07-27 10:48 |
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Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
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1,742 |
by AJVincelli Sun, 2018-11-25 11:29 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
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2,573 |
by rmoretti Mon, 2023-02-06 15:06 |
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Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
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2,649 |
by rmoretti Tue, 2017-03-28 08:51 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,359 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
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2,649 |
by rmoretti Mon, 2015-01-26 12:15 |
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Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
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1,431 |
by rmoretti Mon, 2019-06-24 15:19 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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5,171 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
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1,367 |
by rmoretti Fri, 2018-08-03 07:54 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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5,663 |
by nannemdp Mon, 2014-04-21 06:47 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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2,155 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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1,927 |
by smlewis Wed, 2021-12-08 13:02 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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1,379 |
by rmoretti Fri, 2018-08-24 11:28 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,180 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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2,704 |
by rmoretti Wed, 2018-03-07 08:44 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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2,112 |
by rmoretti Mon, 2017-03-13 08:01 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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654 |
by Corvin Mon, 2021-12-13 09:07 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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2,413 |
by felipet Thu, 2014-07-17 10:13 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
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1,743 |
by lanselibai Fri, 2019-12-27 09:38 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,347 |
by lanselibai Sat, 2015-01-17 07:57 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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689 |
by ozyo Tue, 2020-12-29 09:41 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
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473 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
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1,449 |
by jennifer Wed, 2015-04-08 05:29 |
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ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
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4,023 |
by katherinemccoy Tue, 2023-02-28 18:19 |
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ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
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916 |
by erpannec Thu, 2022-09-15 05:17 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
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1,676 |
by everyday847 Fri, 2019-03-29 13:13 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,257 |
by smlewis Mon, 2014-04-21 06:47 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
0 |
2,575 |
by cossio Mon, 2015-01-19 07:14 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
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2,347 |
by nawsad Mon, 2014-04-21 06:47 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
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1,809 |
by smlewis Mon, 2015-06-08 06:35 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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677 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
2 |
2,724 |
by Pernille Wed, 2014-10-08 10:41 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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881 |
by rmoretti Tue, 2021-05-18 07:21 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
3,265 |
by cn Mon, 2014-04-21 06:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
1 |
2,430 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
5,991 |
by yogeshkd Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,737 |
by rmoretti Tue, 2016-07-12 09:30 |
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RIFdocking：Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/ by sia » Tue, 2022-08-02 20:06 |
2 |
883 |
by SeongRyeong Go Mon, 2022-08-15 18:31 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
3,033 |
by mark.wilson Mon, 2014-04-21 06:47 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
2 |
3,682 |
by rmoretti Wed, 2016-09-14 02:05 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
2,449 |
by everyday847 Wed, 2020-05-20 08:52 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
1,427 |
by everyday847 Wed, 2020-12-09 21:46 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,237 |
by rmoretti Mon, 2014-02-24 09:12 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
5,305 |
by mkoohim Mon, 2014-04-21 06:47 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
806 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,148 |
by benhardy Wed, 2020-09-30 08:42 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
1 |
2,237 |
by rmoretti Mon, 2014-07-21 10:51 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,860 |
by ahonegger Mon, 2014-04-21 06:47 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
2,604 |
by smlewis Mon, 2019-09-23 11:42 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
1,406 |
by cm21 Wed, 2020-05-20 11:22 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,605 |
by nannemdp Wed, 2021-02-03 08:52 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
3,477 |
by smlewis Tue, 2017-07-11 07:53 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
2,893 |
by ladimafakher Thu, 2018-11-01 03:47 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
0 |
511 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
4,331 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
6,246 |
by rmoretti Mon, 2015-10-12 15:10 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
1 |
1,663 |
by smlewis Mon, 2017-02-06 06:57 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
1,641 |
by Danielsebas Sun, 2019-09-01 02:38 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
3,651 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
1,506 |
by vizcarra Thu, 2021-08-26 10:16 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,980 |
by Danielsebas Thu, 2019-09-05 03:35 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
0 |
628 |
by Hirbond Tue, 2022-03-01 13:16 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
6,399 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
4,818 |
by jingwei xu Wed, 2016-05-04 23:28 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,458 |
by Payne Tue, 2022-06-21 07:25 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
787 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
0 |
990 |
by dhirajks Thu, 2018-12-13 19:34 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
8,640 |
by deltag Mon, 2014-04-21 06:47 |
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