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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
4,263 by rmoretti
Mon, 2014-02-24 09:12
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
523 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
660 by benhardy
Wed, 2020-09-30 08:42
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
1,773 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,206 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
1,531 by smlewis
Mon, 2019-09-23 11:42
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
752 by cm21
Wed, 2020-05-20 11:22
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
615 by nannemdp
Wed, 2021-02-03 08:52
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
2,521 by smlewis
Tue, 2017-07-11 07:53
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
1,885 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
0
30 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
3,814 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
5,088 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,191 by smlewis
Mon, 2017-02-06 06:57
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
964 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
2,814 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
432 by vizcarra
Thu, 2021-08-26 10:16
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,212 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
5,284 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
3,664 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
0
1,229 by daniloboskovic
Fri, 2019-11-08 08:27
Normal topic Rosetta remodel - including an RNA ligand
by daniloboskovic » Fri, 2020-04-10 04:24
0
461 by daniloboskovic
Fri, 2020-04-10 04:24
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
655 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
7,519 by deltag
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
2,607 by cdegut
Fri, 2017-11-03 05:50
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,111 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
7,700 by attesor
Mon, 2014-04-21 06:47
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
1,449 by cossio
Sun, 2018-03-11 09:12
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
863 by danpf
Fri, 2020-02-21 18:37
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45
24
14,022 by aroop
Mon, 2014-04-21 06:47
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
3,037 by David Weis
Mon, 2017-03-13 10:59
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,108 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
10,988 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
4,675 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,085 by dgront
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
3,870 by jianqing
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
256 by agctomer
Tue, 2021-01-19 22:45
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
1,523 by esozdemir
Thu, 2019-06-13 12:19
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
378 by brspurri
Fri, 2020-08-28 09:11
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
441 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
1,101 by brspurri
Tue, 2020-08-18 09:57
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
1,295 by brspurri
Wed, 2020-06-03 13:20
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
694 by brspurri
Thu, 2020-05-14 12:24
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
1,967 by smlewis
Mon, 2017-01-23 06:26
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
588 by jlawrie
Fri, 2020-08-14 14:09
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
3,315 by rmoretti
Thu, 2017-06-01 08:52
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
5,508 by rmoretti
Tue, 2015-11-24 15:30
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
1,349 by dnamkr
Thu, 2019-12-26 10:22
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
2,135 by rmoretti
Thu, 2017-02-02 09:02
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
10,809 by rmoretti
Wed, 2018-11-21 15:45
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
836 by danpf
Thu, 2020-09-24 13:44
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
3,258 by rmoretti
Thu, 2017-01-19 09:11
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
229 by vmulligan
Wed, 2021-04-28 12:59
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
962 by haom
Tue, 2020-06-16 05:55
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
1,503 by xingqing326
Tue, 2020-04-21 19:11
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
6,991 by deltag
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
9,563 by joeg
Mon, 2014-04-21 06:47
Normal topic RoseTTaFold
by ozsolomon » Thu, 2021-10-07 05:27
2
53 by ozsolomon
Thu, 2021-10-07 14:25
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
4,953 by Gerdes
Fri, 2014-02-07 06:48
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
1,370 by rmoretti
Tue, 2018-01-16 07:24
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
390 by sam_dc
Mon, 2021-04-12 07:24
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
2,236 by rmoretti
Tue, 2016-01-05 08:35
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
4,148 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
974 by rmoretti
Mon, 2019-08-26 12:57
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
1,552 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,495 by rmoretti
Fri, 2016-10-14 08:56
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
1,663 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
2,638 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
5,629 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,025 by kamau
Wed, 2017-12-13 14:31
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
948 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
3,055 by jtmacd
Fri, 2015-12-04 03:11
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
1,833 by rmoretti
Fri, 2016-04-29 08:26
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
638 by zdaw
Tue, 2020-12-15 15:38
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
2,340 by Yero
Thu, 2019-07-18 01:39
Normal topic RosettaSurface in 3.4?
by skovacs » Tue, 2012-07-10 16:02
2
2,248 by mpacella
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
5,100 by Anonymous
Mon, 2014-04-21 06:47
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
6,623 by rmoretti
Fri, 2014-02-07 08:01
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
2,161 by bjharris
Sun, 2020-08-23 14:03
Normal topic Rosetta_cm Partial Threading Removing Parts of Sequence
by gszwabowski » Thu, 2019-06-20 12:30
1
879 by rmoretti
Mon, 2019-06-24 13:43
Normal topic rosetta_cm segfault
by browns02 » Fri, 2021-07-09 13:35
2
189 by rmoretti
Fri, 2021-07-09 15:05
Normal topic Rosetta_cm Segmentation Fault
by gszwabowski » Thu, 2019-06-20 12:55
2
1,403 by gszwabowski
Wed, 2019-06-26 10:25
Normal topic Rosetta_scripts error, Got some signal... It is:6
by jhm13c » Fri, 2017-04-14 14:05
1
1,341 by rmoretti
Sat, 2017-04-15 13:30
Normal topic rotamer library in coupled_moves
by mtyras » Fri, 2015-05-29 07:46
2
2,737 by mtyras
Mon, 2015-06-08 03:18
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
4,321 by lanselibai
Tue, 2014-11-11 15:28
Hot topic Run AbinitioRelax (rosetta 3.3) on cluster
by grisha » Mon, 2011-12-12 14:20
18
13,124 by grisha
Mon, 2014-04-21 06:47
Normal topic Runnig Abinitio & score app
by Gaurav_kumar » Wed, 2011-11-23 20:45
9
9,086 by rmoretti
Mon, 2014-04-21 06:47
Normal topic running in MPI mode and multiple scores per output PDB file?
by dantimatter » Wed, 2019-10-30 09:42
7
2,514 by dantimatter
Wed, 2019-11-06 09:51
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
3,304 by matteoferla
Mon, 2021-07-19 06:13
Normal topic Running RosettaHoles2
by weehee » Wed, 2013-02-13 09:35
3
2,632 by weehee
Mon, 2014-04-21 06:47
Normal topic Running snugdock was crashed by "segmentation fault"
by Sunyp_IM » Mon, 2017-08-21 05:03
3
1,772 by rmoretti
Tue, 2017-08-22 09:03
Normal topic running structure prediction with robetta server like automation
by dhirajks » Mon, 2018-01-29 21:32
1
1,379 by rmoretti
Tue, 2018-01-30 07:51
Normal topic r_frag_quality
by ii_cnr » Mon, 2021-04-12 03:06
2
287 by ii_cnr
Mon, 2021-04-12 23:44
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
3,662 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Sampling a wider range of RMSD of poses by Rosetta Dock
by johnnytam100 » Tue, 2019-05-21 22:28
1
811 by johnnytam100
Thu, 2019-05-23 20:52
Normal topic Score - Strange message
by Ashafix » Wed, 2013-11-20 15:23
2
2,673 by Ashafix
Mon, 2014-04-21 06:48
Normal topic score and relax
by Prasanth Kumar » Thu, 2013-05-02 05:09
1
2,644 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,380 by rmoretti
Fri, 2015-01-02 11:06
Normal topic Score Functions for Ligand-protein Docking
by ziruiw » Sun, 2021-04-25 13:41
4
501 by ziruiw
Fri, 2021-04-30 12:01
Normal topic score is 0 in the output? - RosettaScripts
by chrisHKL » Thu, 2020-03-05 09:33
0
419 by chrisHKL
Thu, 2020-03-05 12:58
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