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Rosetta 3 - Applications
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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5,056 |
by nannemdp Mon, 2014-04-21 06:47 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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1,265 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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559 |
by smlewis Wed, 2021-12-08 13:02 |
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Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
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1,074 |
by rmoretti Fri, 2018-08-24 11:28 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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803 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
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2,174 |
by rmoretti Wed, 2018-03-07 08:44 |
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Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
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1,743 |
by rmoretti Mon, 2017-03-13 08:01 |
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Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
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171 |
by Corvin Mon, 2021-12-13 09:07 |
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Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
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2,050 |
by felipet Thu, 2014-07-17 10:13 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
1,211 |
by lanselibai Fri, 2019-12-27 09:38 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,172 |
by lanselibai Sat, 2015-01-17 07:57 |
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RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
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441 |
by ozyo Tue, 2020-12-29 09:41 |
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Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
0 |
245 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
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Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
0 |
1,279 |
by jennifer Wed, 2015-04-08 05:29 |
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reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
1,279 |
by everyday847 Fri, 2019-03-29 13:13 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,000 |
by smlewis Mon, 2014-04-21 06:47 |
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Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
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2,387 |
by cossio Mon, 2015-01-19 07:14 |
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Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,030 |
by nawsad Mon, 2014-04-21 06:47 |
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Resfile as a input for InterfaceAnalyzer by palak8669 » Sun, 2015-06-07 21:46 |
1 |
1,533 |
by smlewis Mon, 2015-06-08 06:35 |
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Residue selector by Alison_Yajie » Wed, 2020-06-17 19:57 |
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462 |
by Alison_Yajie Thu, 2020-06-18 09:47 |
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residues_patch_selectors CENTROID_HA by Pernille » Fri, 2014-10-03 03:53 |
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2,339 |
by Pernille Wed, 2014-10-08 10:41 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
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470 |
by rmoretti Tue, 2021-05-18 07:21 |
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Residue_energy_breakdown utility by cn » Sat, 2012-03-17 06:11 |
3 |
2,857 |
by cn Mon, 2014-04-21 06:47 |
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restrain residues in docking by albumns » Sat, 2013-11-02 08:52 |
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2,155 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
5,310 |
by yogeshkd Mon, 2014-04-21 06:47 |
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revert_design_to_native app comparison to FavorNativeResidue mover by nwhoppe » Wed, 2016-06-29 14:35 |
3 |
3,264 |
by rmoretti Tue, 2016-07-12 09:30 |
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RMS determination using Rosetta 3.3 by adraney » Thu, 2011-12-08 12:44 |
2 |
2,671 |
by mark.wilson Mon, 2014-04-21 06:47 |
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RMSD calculation by hamedkhakzad » Tue, 2016-09-13 04:56 |
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3,093 |
by rmoretti Wed, 2016-09-14 02:05 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
5 |
1,827 |
by everyday847 Wed, 2020-05-20 08:52 |
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RNA modeling with step wise Monte Carlo error by szcshr123 » Mon, 2020-12-07 18:08 |
3 |
938 |
by everyday847 Wed, 2020-12-09 21:46 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
4,608 |
by rmoretti Mon, 2014-02-24 09:12 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
4,614 |
by mkoohim Mon, 2014-04-21 06:47 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
632 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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860 |
by benhardy Wed, 2020-09-30 08:42 |
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rosetta 3.3 - antibody by ron amon » Mon, 2014-07-21 00:44 |
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1,935 |
by rmoretti Mon, 2014-07-21 10:51 |
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Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains by ahonegger » Tue, 2012-04-24 01:34 |
3 |
3,427 |
by ahonegger Mon, 2014-04-21 06:47 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
5 |
1,914 |
by smlewis Mon, 2019-09-23 11:42 |
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Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1 by cm21 » Wed, 2020-05-20 08:55 |
2 |
995 |
by cm21 Wed, 2020-05-20 11:22 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
4 |
1,031 |
by nannemdp Wed, 2021-02-03 08:52 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
5 |
2,875 |
by smlewis Tue, 2017-07-11 07:53 |
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rosetta backrub by ladimafakher » Thu, 2018-10-04 08:01 |
4 |
2,277 |
by ladimafakher Thu, 2018-11-01 03:47 |
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Rosetta DARc suboptimal dockings by ddhoyo » Mon, 2021-10-11 06:18 |
0 |
196 |
by ddhoyo Mon, 2021-10-11 06:18 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
1 |
3,993 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
5,504 |
by rmoretti Mon, 2015-10-12 15:10 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
1 |
1,352 |
by smlewis Mon, 2017-02-06 06:57 |
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Rosetta fragment tools installation error by Danielsebas » Thu, 2019-08-29 02:17 |
2 |
1,208 |
by Danielsebas Sun, 2019-09-01 02:38 |
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Rosetta Holes by zsun12 » Wed, 2015-09-30 11:40 |
1 |
3,088 |
by rmoretti Mon, 2015-10-12 15:20 |
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Rosetta Ligand Ensemble by malfonsoprieto » Wed, 2021-05-26 10:21 |
3 |
852 |
by vizcarra Thu, 2021-08-26 10:16 |
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Rosetta make_fragments.pl error? by Danielsebas » Mon, 2019-09-02 07:51 |
3 |
1,492 |
by Danielsebas Thu, 2019-09-05 03:35 |
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Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc by Hirbond » Tue, 2022-03-01 13:16 |
0 |
140 |
by Hirbond Tue, 2022-03-01 13:16 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
5,668 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
2 |
4,099 |
by jingwei xu Wed, 2016-05-04 23:28 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
0 |
1,482 |
by daniloboskovic Fri, 2019-11-08 08:27 |
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Rosetta remodel - including an RNA ligand by daniloboskovic » Fri, 2020-04-10 04:24 |
0 |
569 |
by daniloboskovic Fri, 2020-04-10 04:24 |
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rosetta remodel and designing helix extension by dhirajks » Thu, 2018-12-13 19:34 |
0 |
762 |
by dhirajks Thu, 2018-12-13 19:34 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
5 |
7,895 |
by deltag Mon, 2014-04-21 06:47 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
5 |
3,029 |
by cdegut Fri, 2017-11-03 05:50 |
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rosetta scores for mutated structures by harshkhare » Wed, 2011-11-23 09:30 |
1 |
2,295 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta scoring by Dimitrov » Thu, 2012-09-20 01:54 |
7 |
8,148 |
by attesor Mon, 2014-04-21 06:47 |
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Rosetta Script for ddg_monomer protocol 16 by cossio » Thu, 2018-01-25 08:23 |
2 |
1,687 |
by cossio Sun, 2018-03-11 09:12 |
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Rosetta scripts crash in CM workflow by jlburkhead » Tue, 2019-12-03 22:55 |
1 |
1,051 |
by danpf Fri, 2020-02-21 18:37 |
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Rosetta Scripts: Loop Modeling w. Selective Repacking by aroop » Mon, 2013-01-07 08:45 |
24 |
15,533 |
by aroop Mon, 2014-04-21 06:47 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
5 |
3,444 |
by David Weis Mon, 2017-03-13 10:59 |
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rosetta's keyword list by fred » Tue, 2014-01-21 06:03 |
1 |
2,262 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta-Holes Scoring Function by kroberts » Fri, 2011-05-13 14:05 |
11 |
11,994 |
by rmoretti Mon, 2014-04-21 06:47 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
5,035 |
by jadolfbr Mon, 2014-04-21 06:48 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
4 |
3,362 |
by dgront Mon, 2014-04-21 06:47 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
3 |
4,129 |
by jianqing Mon, 2014-04-21 06:47 |
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RosettaAntibody - No matching templates for CDR1 by agctomer » Tue, 2021-01-19 22:45 |
0 |
423 |
by agctomer Tue, 2021-01-19 22:45 |
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RosettaAntibody core.pose.util error by rishibedi » Fri, 2018-10-05 01:31 |
2 |
1,795 |
by esozdemir Thu, 2019-06-13 12:19 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
474 |
by brspurri Fri, 2020-08-28 09:11 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
579 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
4 |
1,472 |
by brspurri Tue, 2020-08-18 09:57 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
5 |
1,684 |
by brspurri Wed, 2020-06-03 13:20 |
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RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow? by brspurri » Thu, 2020-05-14 11:15 |
2 |
922 |
by brspurri Thu, 2020-05-14 12:24 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
0 |
819 |
by jlawrie Fri, 2020-08-14 14:09 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,184 |
by smlewis Mon, 2017-01-23 06:26 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
5 |
3,722 |
by rmoretti Thu, 2017-06-01 08:52 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
5,974 |
by rmoretti Tue, 2015-11-24 15:30 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
1,610 |
by dnamkr Thu, 2019-12-26 10:22 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
3 |
2,366 |
by rmoretti Thu, 2017-02-02 09:02 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
20 |
12,150 |
by rmoretti Wed, 2018-11-21 15:45 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,129 |
by danpf Thu, 2020-09-24 13:44 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
5 |
3,630 |
by rmoretti Thu, 2017-01-19 09:11 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
444 |
by vmulligan Wed, 2021-04-28 12:59 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
1,300 |
by haom Tue, 2020-06-16 05:55 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
2,044 |
by xingqing326 Tue, 2020-04-21 19:11 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
7,746 |
by deltag Mon, 2014-04-21 06:47 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
9 |
10,345 |
by joeg Mon, 2014-04-21 06:47 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
3 |
220 |
by rmoretti Tue, 2022-03-22 09:10 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
2 |
678 |
by ozsolomon Thu, 2021-10-07 14:25 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
6 |
5,424 |
by Gerdes Fri, 2014-02-07 06:48 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
1 |
1,599 |
by rmoretti Tue, 2018-01-16 07:24 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
2 |
745 |
by sam_dc Mon, 2021-04-12 07:24 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
2,419 |
by rmoretti Tue, 2016-01-05 08:35 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
4,547 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
1 |
1,182 |
by rmoretti Mon, 2019-08-26 12:57 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
1,714 |
by mwfranklin Mon, 2016-07-25 11:49 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
1,655 |
by rmoretti Fri, 2016-10-14 08:56 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
2,114 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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