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Rosetta 3 - Applications

Topic / Topic startersort descending Replies Views Last post
Normal topic Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling"
by lanselibai » Sun, 2014-09-21 09:02
10
9,596 by lanselibai
Tue, 2014-10-07 02:58
Normal topic RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover
by CordycepsLin » Sun, 2022-02-06 19:09
9
1,850 by CordycepsLin
Wed, 2022-02-09 19:39
Normal topic radius of gyration as constrain
by dhirajks » Sat, 2018-05-05 23:00
1
1,385 by smlewis
Mon, 2018-05-07 11:42
Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
3,957 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
4,343 by rmoretti
Tue, 2016-07-12 09:35
Normal topic References where Rosetta is used to compute ddG of binding after mutation?
by cossio » Tue, 2015-03-17 05:13
1
2,523 by rmoretti
Wed, 2015-03-25 11:33
Normal topic refining crystal structure using phenix without CIF file
by banshee » Fri, 2016-09-09 01:14
2
2,691 by banshee
Mon, 2016-09-12 23:41
Normal topic regarding extracting silent file - renamed tag
by shrutikhare » Thu, 2014-04-17 01:19
2
2,318 by shrutikhare
Fri, 2014-04-18 23:11
Normal topic Regarding the efficiency of the new low resolution ligand-docking movement “Transform”.
by Martin Floor » Mon, 2017-05-15 09:19
2
2,200 by Martin Floor
Mon, 2017-05-15 11:13
Normal topic relax a protein with phosphorylated serine residue
by zruan » Thu, 2018-02-01 09:18
3
2,404 by rmoretti
Tue, 2018-02-06 09:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,694 by franfdez
Mon, 2014-04-21 06:47
Normal topic relax and movemap
by Alison_Yajie » Wed, 2020-05-20 21:27
3
1,663 by smlewis
Thu, 2020-05-21 21:05
Normal topic Relax both peptide and ligands
by matteoferla » Thu, 2018-09-13 03:11
3
2,087 by smlewis
Fri, 2018-09-14 10:34
Normal topic relax constraints not minimized
by m_grisewood » Fri, 2012-08-10 08:31
2
3,271 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Relax evaluates protein-DNA complexes?
by pablogalazdavison » Thu, 2022-05-12 12:05
2
605 by pablogalazdavison
Fri, 2022-05-20 12:27
Normal topic Relax in membrane pull my protein out of the membrane
by Martin Floor » Wed, 2022-01-26 07:46
0
572 by Martin Floor
Wed, 2022-01-26 07:46
Normal topic Relax is resulting in a Segmentation Fault
by brspurri » Thu, 2017-08-24 18:46
3
3,063 by brspurri
Sat, 2017-08-26 07:08
Normal topic relax job failed
by albumns » Sat, 2014-07-26 00:21
1
1,843 by rmoretti
Sun, 2014-07-27 10:48
Normal topic Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2
by AJVincelli » Sat, 2018-07-14 13:14
1
1,577 by AJVincelli
Sun, 2018-11-25 11:29
Normal topic relax protein with multi-conformer bound ligand
by xfradera » Thu, 2023-01-12 09:10
3
923 by xfradera
Fri, 2023-01-13 09:07
Normal topic Relax structure with metal cofactors
by h_trasatti » Tue, 2017-03-14 14:04
2
2,521 by rmoretti
Tue, 2017-03-28 08:51
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
2,273 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax with a ligand is messing up the coordinates of the ligand
by brspurri » Sat, 2015-01-24 12:39
1
2,540 by rmoretti
Mon, 2015-01-26 12:15
Normal topic Relax with multiple small molecules
by jharamesh » Sun, 2019-05-26 19:34
1
1,331 by rmoretti
Mon, 2019-06-24 15:19
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
4,976 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Relax with RDC data gives segmentation fault
by sn » Mon, 2018-07-23 11:39
1
1,294 by rmoretti
Fri, 2018-08-03 07:54
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
5,482 by nannemdp
Mon, 2014-04-21 06:47
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,871 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
1,446 by smlewis
Wed, 2021-12-08 13:02
Normal topic Relaxing protein-RNA complexes
by rkirchdo » Fri, 2018-08-03 08:50
1
1,298 by rmoretti
Fri, 2018-08-24 11:28
Normal topic remodel ERROR: unrecognized mm_atom_type_name RGU
by daniloboskovic » Sat, 2020-02-22 11:55
1
1,044 by daniloboskovic
Tue, 2020-02-25 08:28
Normal topic remodel gives no output
by coomteng@gmail.com » Tue, 2018-03-06 07:40
3
2,553 by rmoretti
Wed, 2018-03-07 08:44
Normal topic Remodel with residue constraints
by sn » Fri, 2017-03-10 01:40
2
2,002 by rmoretti
Mon, 2017-03-13 08:01
Normal topic Remodel's problem in treatment with non-protein residues
by Corvin » Mon, 2021-12-13 09:07
0
491 by Corvin
Mon, 2021-12-13 09:07
Normal topic Remodel: neighbor cutoff
by felipet » Wed, 2014-07-16 08:11
2
2,311 by felipet
Thu, 2014-07-17 10:13
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
1,580 by lanselibai
Fri, 2019-12-27 09:38
Normal topic remodel: what are the exact meanings of notations for secondary structure?
by lanselibai » Sat, 2015-01-17 04:53
0
1,301 by lanselibai
Sat, 2015-01-17 07:57
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
614 by ozyo
Tue, 2020-12-29 09:41
Normal topic Repacker vs minimization
by Elijah_Hix » Fri, 2021-07-02 07:25
0
411 by Elijah_Hix
Fri, 2021-07-02 07:25
Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,395 by jennifer
Wed, 2015-04-08 05:29
Normal topic ReplicaDock 2.0 Native vs Input Structure Flags Confusion
by katherinemccoy » Tue, 2022-12-27 06:42
1
1,971 by Ameya
Tue, 2022-12-27 11:21
Normal topic ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ]
by erpannec » Tue, 2022-08-09 05:42
4
644 by erpannec
Thu, 2022-09-15 05:17
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
1,569 by everyday847
Fri, 2019-03-29 13:13
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,183 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,521 by cossio
Mon, 2015-01-19 07:14
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
2,247 by nawsad
Mon, 2014-04-21 06:47
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
1,737 by smlewis
Mon, 2015-06-08 06:35
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
617 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
2,617 by Pernille
Wed, 2014-10-08 10:41
Normal topic residue_energy_breakdown of a protein-ligand complex.
by sam_dc » Tue, 2021-05-18 04:45
1
762 by rmoretti
Tue, 2021-05-18 07:21
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,152 by cn
Mon, 2014-04-21 06:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,350 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
5,779 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
3,591 by rmoretti
Tue, 2016-07-12 09:30
Normal topic RIFdocking:Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/
by sia » Tue, 2022-08-02 20:06
2
507 by SeongRyeong Go
Mon, 2022-08-15 18:31
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
2,925 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
3,481 by rmoretti
Wed, 2016-09-14 02:05
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
2,284 by everyday847
Wed, 2020-05-20 08:52
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
1,283 by everyday847
Wed, 2020-12-09 21:46
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
5,051 by rmoretti
Mon, 2014-02-24 09:12
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
5,119 by mkoohim
Mon, 2014-04-21 06:47
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
757 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
1,067 by benhardy
Wed, 2020-09-30 08:42
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
2,156 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
3,737 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
2,405 by smlewis
Mon, 2019-09-23 11:42
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
1,296 by cm21
Wed, 2020-05-20 11:22
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
1,452 by nannemdp
Wed, 2021-02-03 08:52
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
3,301 by smlewis
Tue, 2017-07-11 07:53
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
2,733 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
0
462 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
4,216 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
6,025 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,588 by smlewis
Mon, 2017-02-06 06:57
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
1,537 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
3,501 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
1,366 by vizcarra
Thu, 2021-08-26 10:16
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
1,846 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc
by Hirbond » Tue, 2022-03-01 13:16
0
479 by Hirbond
Tue, 2022-03-01 13:16
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
6,169 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
4,563 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
1
2,107 by Payne
Tue, 2022-06-21 07:25
Normal topic Rosetta remodel - including an RNA ligand
by daniloboskovic » Fri, 2020-04-10 04:24
0
728 by daniloboskovic
Fri, 2020-04-10 04:24
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
924 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
8,430 by deltag
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,501 by cdegut
Fri, 2017-11-03 05:50
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,490 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
8,802 by attesor
Mon, 2014-04-21 06:47
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
2,002 by cossio
Sun, 2018-03-11 09:12
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
1,282 by danpf
Fri, 2020-02-21 18:37
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45
24
17,028 by aroop
Mon, 2014-04-21 06:47
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
3,919 by David Weis
Mon, 2017-03-13 10:59
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,448 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
13,109 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
5,459 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,699 by dgront
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
4,472 by jianqing
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
617 by agctomer
Tue, 2021-01-19 22:45
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
2,100 by esozdemir
Thu, 2019-06-13 12:19
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
622 by brspurri
Fri, 2020-08-28 09:11
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