You are here
Rosetta 3 - Applications
Log in to post new content in the forum.
Topic / Topic starter | Replies | Views | Last post | |
---|---|---|---|---|
Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
1 |
1,876 |
by rmoretti Wed, 2018-11-21 15:31 |
|
Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,777 |
by jljbbc Mon, 2014-04-21 06:47 |
|
problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
1 |
3,179 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
|
Problem with AtomPair constraint by jarek » Tue, 2012-10-09 07:28 |
1 |
2,397 |
by smlewis Mon, 2014-04-21 06:47 |
|
problem with fixed_membrane option of membrane abinitio by yescalona » Thu, 2013-01-17 15:42 |
3 |
3,545 |
by smlewis Mon, 2014-04-21 06:47 |
|
Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
5,839 |
by xfliu Mon, 2014-04-21 06:47 |
|
problem with modelling of protein (140 and 150 residues respectively) by krlitros87 » Wed, 2014-10-22 09:39 |
1 |
2,152 |
by rmoretti Thu, 2014-10-23 13:55 |
|
Problem with mpirun/mpiexec by ahansel » Fri, 2020-07-10 08:37 |
1 |
3,723 |
by rmoretti Fri, 2020-07-10 09:59 |
|
Problem with Scoring function and PlaceStub mover by a-eatemadi@razi... » Sat, 2018-04-07 09:22 |
0 |
1,186 |
by a-eatemadi@razi... Sat, 2018-04-07 09:24 |
|
Problem with SymmDock in helical symmetry by mumdonar » Wed, 2013-09-18 03:59 |
2 |
3,867 |
by mumdonar Mon, 2014-04-21 06:48 |
|
Problem with symmetric docking by saxen » Fri, 2011-04-29 15:15 |
3 |
4,132 |
by smlewis Mon, 2014-04-21 06:47 |
|
problems in InterfaceAnalyzer analysis by chenchaozhao » Fri, 2011-12-02 23:36 |
9 |
8,698 |
by smlewis Mon, 2014-04-21 06:47 |
|
Problems incorporating nucleotides (GTP/GDP) into the modeling process for RosettaCM by ajkal » Fri, 2017-04-14 08:44 |
3 |
3,581 |
by rmoretti Thu, 2017-04-20 13:59 |
|
Problems running pmut in parallel with openmpi by RMJ » Fri, 2012-09-21 06:25 |
2 |
4,026 |
by RMJ Mon, 2014-04-21 06:47 |
|
Problems when running Rosetta VIP with cofactors by Basantab » Fri, 2013-04-26 13:31 |
14 |
15,066 |
by Basantab Mon, 2014-04-21 06:47 |
|
Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
3 |
4,785 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Problems with fixbb in Rosetta 3.5 by mdidonato » Wed, 2014-06-04 13:56 |
2 |
2,721 |
by mdidonato Wed, 2014-06-04 14:55 |
|
problems with generating the params file by dyu » Thu, 2017-09-28 13:34 |
2 |
2,317 |
by dyu Thu, 2017-09-28 18:54 |
|
Problems with Ligand Docking by saxen » Fri, 2011-08-19 00:19 |
8 |
8,843 |
by glemmon Mon, 2014-04-21 06:47 |
|
Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
6 |
6,922 |
by Aben Tue, 2023-04-18 01:31 |
|
Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
1,094 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
|
Problems with waters in CoupledMoves application by Corvin » Tue, 2021-11-16 07:16 |
0 |
890 |
by Corvin Tue, 2021-11-16 07:22 |
|
profit program in antibody design by tzhou » Tue, 2013-10-15 23:29 |
1 |
2,876 |
by rmoretti Mon, 2014-04-21 06:48 |
|
proline patching problem by xun » Tue, 2012-01-03 11:15 |
3 |
3,976 |
by xun Mon, 2014-04-21 06:47 |
|
Protein Design by ac.research » Wed, 2017-02-15 19:25 |
1 |
2,816 |
by cdbahl Sat, 2017-02-18 13:02 |
|
Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
0 |
912 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
|
protein docking failed by albumns » Thu, 2012-11-08 02:59 |
6 |
6,216 |
by rmoretti Mon, 2014-04-21 06:47 |
|
Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
2 |
1,529 |
by sam_dc Fri, 2021-03-26 12:04 |
|
protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
1 |
1,494 |
by rmoretti Wed, 2019-07-10 09:24 |
|
protein interface design by Negarsardar » Tue, 2019-05-28 07:04 |
2 |
2,158 |
by Negarsardar Thu, 2019-05-30 23:46 |
|
Protein Protein Docking with Constraints by ajaniharesh » Wed, 2019-04-10 07:26 |
1 |
1,686 |
by rmoretti Thu, 2019-05-09 15:40 |
|
Protein Protein Docking with Linker by mrinal » Mon, 2023-03-20 15:58 |
0 |
785 |
by mrinal Mon, 2023-03-20 15:58 |
|
protein protein interaction design by Negarsardar » Wed, 2019-05-15 06:13 |
3 |
3,575 |
by ajasja Wed, 2019-05-15 15:40 |
|
protein relax by Alison_Yajie » Tue, 2020-05-19 08:29 |
0 |
899 |
by Alison_Yajie Tue, 2020-05-19 08:29 |
|
protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
7 |
7,731 |
by dimaio Mon, 2014-04-21 06:47 |
|
Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
1 |
4,507 |
by rmoretti Mon, 2014-04-21 06:48 |
|
protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
2 |
1,458 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
|
protein-protein docking by cbala » Mon, 2011-04-18 09:15 |
1 |
2,647 |
by smlewis Mon, 2014-04-21 06:47 |
|
Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
1 |
1,375 |
by danpf Fri, 2020-02-21 18:23 |
|
protein-protein docking with flexible backbone by tim » Fri, 2013-12-20 05:52 |
1 |
4,393 |
by rmoretti Mon, 2014-04-21 06:48 |
|
Protein/Protein Ddg demo: How to write predicted mutant structures? by cossio » Wed, 2015-11-04 20:14 |
1 |
1,959 |
by rmoretti Tue, 2015-11-10 11:10 |
|
ProteinInterfaceDesign algorithm questions by tsztain » Mon, 2019-02-18 14:10 |
1 |
1,820 |
by rmoretti Sun, 2019-08-25 19:15 |
|
ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
1 |
1,551 |
by rmoretti Wed, 2018-11-21 15:10 |
|
ProteinLigandInterfaceUpweighter for protein-protein interactions? by ahonegger » Mon, 2014-06-02 06:53 |
2 |
3,333 |
by ahonegger Fri, 2014-06-06 09:31 |
|
Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
1,075 |
by Corvin Wed, 2020-12-30 09:21 |
|
PyIgClassify cannot renumber and label CDRs my Nanobody-Antigen complex for RabD by WBNeT » Fri, 2023-07-07 10:58 |
1 |
440 |
by jadolfbr Mon, 2023-07-10 09:05 |
|
Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
1 |
1,210 |
by matteoferla Wed, 2021-09-15 06:04 |
|
Question about fastsaxs and saxs_score by orionshih » Thu, 2019-06-13 02:30 |
2 |
1,962 |
by orionshih Wed, 2019-06-26 03:54 |
|
Question about running scallo by danbo » Mon, 2021-11-29 23:25 |
8 |
3,520 |
by danbo Wed, 2021-12-22 23:51 |
|
Question on Designing with NCAAs by salvatta » Mon, 2018-09-10 10:09 |
1 |
1,680 |
by rmoretti Thu, 2018-09-20 09:23 |
|
Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
1 |
1,564 |
by rmoretti Fri, 2018-08-03 08:16 |
|
Question with rosetta AbPredict tutorial by terabithia2011 » Mon, 2021-01-25 09:24 |
0 |
818 |
by terabithia2011 Mon, 2021-01-25 09:24 |
|
Questions for "modeling_instructions.pdf" in "Homology or Loop Modelling" by lanselibai » Sun, 2014-09-21 09:02 |
10 |
10,847 |
by lanselibai Tue, 2014-10-07 02:58 |
|
RAbD with N-term,Proline-like ncaa returns segmentation fault during CCDEndsGraftMover by CordycepsLin » Sun, 2022-02-06 19:09 |
9 |
3,602 |
by CordycepsLin Wed, 2022-02-09 19:39 |
|
radius of gyration as constrain by dhirajks » Sat, 2018-05-05 23:00 |
1 |
1,739 |
by smlewis Mon, 2018-05-07 11:42 |
|
Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
4 |
4,809 |
by rmoretti Mon, 2017-02-20 08:09 |
|
Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
4 |
5,247 |
by rmoretti Tue, 2016-07-12 09:35 |
|
RECCESS-Rosetta Segmentation Fault with nonnatural residues by skorro » Tue, 2023-07-25 17:13 |
1 |
426 |
by skorro Fri, 2023-07-28 12:20 |
|
References where Rosetta is used to compute ddG of binding after mutation? by cossio » Tue, 2015-03-17 05:13 |
1 |
2,936 |
by rmoretti Wed, 2015-03-25 11:33 |
|
refining crystal structure using phenix without CIF file by banshee » Fri, 2016-09-09 01:14 |
2 |
3,245 |
by banshee Mon, 2016-09-12 23:41 |
|
regarding extracting silent file - renamed tag by shrutikhare » Thu, 2014-04-17 01:19 |
2 |
2,765 |
by shrutikhare Fri, 2014-04-18 23:11 |
|
Regarding the efficiency of the new low resolution ligand-docking movement “Transform”. by Martin Floor » Mon, 2017-05-15 09:19 |
2 |
2,650 |
by Martin Floor Mon, 2017-05-15 11:13 |
|
relax a protein with phosphorylated serine residue by zruan » Thu, 2018-02-01 09:18 |
3 |
2,965 |
by rmoretti Tue, 2018-02-06 09:47 |
|
Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
6 |
6,478 |
by franfdez Mon, 2014-04-21 06:47 |
|
relax and movemap by Alison_Yajie » Wed, 2020-05-20 21:27 |
3 |
2,292 |
by smlewis Thu, 2020-05-21 21:05 |
|
Relax both peptide and ligands by matteoferla » Thu, 2018-09-13 03:11 |
3 |
2,706 |
by smlewis Fri, 2018-09-14 10:34 |
|
relax constraints not minimized by m_grisewood » Fri, 2012-08-10 08:31 |
2 |
3,739 |
by m_grisewood Mon, 2014-04-21 06:47 |
|
Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
2 |
1,510 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
|
Relax in membrane pull my protein out of the membrane by Martin Floor » Wed, 2022-01-26 07:46 |
0 |
1,028 |
by Martin Floor Wed, 2022-01-26 07:46 |
|
Relax is resulting in a Segmentation Fault by brspurri » Thu, 2017-08-24 18:46 |
3 |
3,784 |
by brspurri Sat, 2017-08-26 07:08 |
|
relax job failed by albumns » Sat, 2014-07-26 00:21 |
1 |
2,167 |
by rmoretti Sun, 2014-07-27 10:48 |
|
Relax multiple PDB files with MPI, jd2, and a pdblist on TACC Stampede2 by AJVincelli » Sat, 2018-07-14 13:14 |
1 |
3,391 |
by AJVincelli Sun, 2018-11-25 11:29 |
|
relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
4 |
3,373 |
by rmoretti Mon, 2023-02-06 15:06 |
|
Relax structure with metal cofactors by h_trasatti » Tue, 2017-03-14 14:04 |
2 |
3,058 |
by rmoretti Tue, 2017-03-28 08:51 |
|
relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
1 |
2,607 |
by smlewis Mon, 2014-04-21 06:47 |
|
Relax with a ligand is messing up the coordinates of the ligand by brspurri » Sat, 2015-01-24 12:39 |
1 |
2,919 |
by rmoretti Mon, 2015-01-26 12:15 |
|
Relax with multiple small molecules by jharamesh » Sun, 2019-05-26 19:34 |
1 |
1,757 |
by rmoretti Mon, 2019-06-24 15:19 |
|
Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
4 |
5,783 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
|
Relax with RDC data gives segmentation fault by sn » Mon, 2018-07-23 11:39 |
1 |
1,620 |
by rmoretti Fri, 2018-08-03 07:54 |
|
relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
6,187 |
by nannemdp Mon, 2014-04-21 06:47 |
|
relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
5 |
2,987 |
by jadolfbr Fri, 2021-01-15 08:06 |
|
Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
4 |
3,039 |
by smlewis Wed, 2021-12-08 13:02 |
|
Relaxing protein-RNA complexes by rkirchdo » Fri, 2018-08-03 08:50 |
1 |
1,637 |
by rmoretti Fri, 2018-08-24 11:28 |
|
remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
1 |
1,484 |
by daniloboskovic Tue, 2020-02-25 08:28 |
|
remodel gives no output by coomteng@gmail.com » Tue, 2018-03-06 07:40 |
3 |
3,258 |
by rmoretti Wed, 2018-03-07 08:44 |
|
Remodel with residue constraints by sn » Fri, 2017-03-10 01:40 |
2 |
2,465 |
by rmoretti Mon, 2017-03-13 08:01 |
|
Remodel's problem in treatment with non-protein residues by Corvin » Mon, 2021-12-13 09:07 |
0 |
982 |
by Corvin Mon, 2021-12-13 09:07 |
|
Remodel: neighbor cutoff by felipet » Wed, 2014-07-16 08:11 |
2 |
2,752 |
by felipet Thu, 2014-07-17 10:13 |
|
Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
2,223 |
by lanselibai Fri, 2019-12-27 09:38 |
|
remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
0 |
1,523 |
by lanselibai Sat, 2015-01-17 07:57 |
|
RemodelMover and Input Pose by ozyo » Tue, 2020-12-29 09:41 |
0 |
895 |
by ozyo Tue, 2020-12-29 09:41 |
|
remove membrane for RosettaMPdock by lluoto » Wed, 2023-12-06 06:22 |
2 |
482 |
by lluoto Wed, 2024-02-21 17:39 |
|
Repacker vs minimization by Elijah_Hix » Fri, 2021-07-02 07:25 |
0 |
672 |
by Elijah_Hix Fri, 2021-07-02 07:25 |
|
Repeatability of DDG calculation by jennifer » Wed, 2015-04-08 05:29 |
0 |
1,626 |
by jennifer Wed, 2015-04-08 05:29 |
|
ReplicaDock 2.0 Native vs Input Structure Flags Confusion by katherinemccoy » Tue, 2022-12-27 06:42 |
2 |
4,697 |
by katherinemccoy Tue, 2023-02-28 18:19 |
|
ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ] by erpannec » Tue, 2022-08-09 05:42 |
4 |
1,848 |
by erpannec Thu, 2022-09-15 05:17 |
|
reporting bugs? (erraser in rosetta 3.10) by meyer » Fri, 2018-12-14 09:40 |
2 |
2,033 |
by everyday847 Fri, 2019-03-29 13:13 |
|
Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
1 |
2,484 |
by smlewis Mon, 2014-04-21 06:47 |
|
Reproduce Robetta's ddg values of interface alanine scan using Rosetta? by cossio » Mon, 2015-01-19 07:14 |
0 |
2,755 |
by cossio Mon, 2015-01-19 07:14 |
|
Reproducing the exact result using information from previos run by nawsad » Thu, 2013-03-14 12:05 |
2 |
2,656 |
by nawsad Mon, 2014-04-21 06:47 |
Log in to post new content in the forum.