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Rosetta 3 - Applications
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Re: Glutamic acid protonation by bharat_46010 » Fri, 2017-02-10 03:08 |
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4,382 |
by rmoretti Mon, 2017-02-20 08:09 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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4,900 |
by protos_heis Mon, 2014-04-21 06:47 |
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Positive scores with SymmDock in helical symmetry by kxiao » Tue, 2014-02-11 07:37 |
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4,391 |
by kxiao Thu, 2014-06-05 08:37 |
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mr_protocols with symmetry and ligand by jhm13c » Mon, 2017-02-27 11:59 |
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3,438 |
by jhm13c Thu, 2017-03-02 12:01 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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5,406 |
by jljbbc Mon, 2014-04-21 06:47 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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5,133 |
by jadolfbr Mon, 2014-04-21 06:47 |
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When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error by Martin Floor » Thu, 2020-09-17 06:01 |
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2,348 |
by Martin Floor Tue, 2020-09-22 00:48 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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6,472 |
by rmoretti Thu, 2015-04-16 11:23 |
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Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-' by AG88 » Thu, 2011-11-03 01:25 |
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7,385 |
by weitzner Mon, 2014-04-21 06:47 |
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RosettaAntibody3 is failing with "Error: no input sequences were specified!" by brspurri » Sun, 2020-08-16 16:16 |
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2,333 |
by brspurri Tue, 2020-08-18 09:57 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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4,803 |
by rmoretti Mon, 2014-04-21 06:47 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
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3,626 |
by smlewis Wed, 2017-12-13 09:54 |
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Any backrub expert? by johnnytam100 » Fri, 2019-03-01 01:58 |
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3,160 |
by johnnytam100 Sun, 2019-03-03 23:42 |
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Rosetta antibody- modeling in the presense of an antigen by agctomer » Mon, 2021-02-01 03:19 |
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1,761 |
by nannemdp Wed, 2021-02-03 08:52 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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4,056 |
by smlewis Mon, 2014-04-21 06:47 |
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relax protein with multi-conformer bound ligand by xfradera » Thu, 2023-01-12 09:10 |
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2,814 |
by rmoretti Mon, 2023-02-06 15:06 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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5,426 |
by afmo Thu, 2014-05-22 01:19 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
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1,138 |
by almeida85 Thu, 2022-08-11 00:58 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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5,984 |
by lanselibai Sun, 2015-03-01 15:00 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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3,958 |
by fred Mon, 2014-04-21 06:47 |
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How to run simulations with non-canonical amino acids? by Denise » Thu, 2017-06-08 07:50 |
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3,757 |
by Denise Thu, 2017-06-15 04:26 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
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5,779 |
by jadolfbr Mon, 2014-04-21 06:48 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
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2,112 |
by haom Tue, 2020-06-16 05:55 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,532 |
by smlewis Mon, 2014-04-21 06:47 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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4,536 |
by cossio Mon, 2015-01-19 07:10 |
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Can I assume the outputs from different runs are from a same batch? by lanselibai » Mon, 2014-11-03 06:34 |
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4,429 |
by lanselibai Mon, 2014-11-03 13:15 |
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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1,891 |
by agctomer Sun, 2021-01-31 01:06 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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2,271 |
by maruhuang Thu, 2019-09-26 18:52 |
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Filter for fixed-bb design using RosettaScript? by chrisHKL » Fri, 2020-02-28 19:47 |
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2,200 |
by vmulligan Mon, 2020-03-02 13:40 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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4,866 |
by fred Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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3,475 |
by rmoretti Fri, 2019-03-29 09:30 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
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6,731 |
by IAndre Mon, 2014-04-21 06:47 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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1,602 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
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5,438 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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2,743 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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ligand dock question by sacch » Sun, 2012-05-20 19:49 |
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4,251 |
by sacch Mon, 2014-04-21 06:47 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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2,666 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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2,288 |
by smlewis Wed, 2021-12-08 13:02 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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5,475 |
by rmoretti Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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4,709 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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3,620 |
by MJG Tue, 2017-04-04 23:59 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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5,393 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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4,678 |
by rmoretti Wed, 2015-09-09 12:08 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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4,856 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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5,210 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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4,933 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
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2,117 |
by Corvin Wed, 2020-11-25 02:58 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
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3,433 |
by subha Fri, 2017-06-09 15:42 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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5,040 |
by wsgosal Mon, 2014-04-21 06:48 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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2,486 |
by danpf Fri, 2020-02-21 18:32 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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2,814 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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4,852 |
by smlewis Mon, 2014-04-21 06:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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5,116 |
by rmoretti Mon, 2014-04-21 06:48 |
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rosetta3.4 fragment file problem by David Hoover » Wed, 2012-05-16 14:42 |
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3,988 |
by dgront Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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4,582 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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7,121 |
by lanselibai Fri, 2014-10-17 05:10 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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5,971 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
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8,838 |
by deltag Mon, 2014-04-21 06:47 |
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How to minimize the decoys obtained from backrub? by Vedasheersh » Wed, 2017-06-14 10:26 |
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3,848 |
by SenyorDrew Fri, 2017-06-30 09:47 |
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rosetta app by MA » Wed, 2017-07-05 06:52 |
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3,679 |
by smlewis Tue, 2017-07-11 07:53 |
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trRosetta protocol Segmentation Fault by nc-ring » Wed, 2021-04-28 11:57 |
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2,220 |
by nc-ring Tue, 2021-05-04 12:26 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
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7,070 |
by linucks Mon, 2016-06-20 12:02 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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3,580 |
by rmoretti Tue, 2019-07-09 10:13 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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4,964 |
by ks Mon, 2016-09-12 03:14 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
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6,948 |
by rmoretti Tue, 2015-11-24 15:30 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
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6,656 |
by rmoretti Mon, 2014-04-21 06:47 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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5,870 |
by siciliu Thu, 2014-04-10 09:50 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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3,082 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
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9,411 |
by rmoretti Mon, 2014-04-21 06:48 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
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6,799 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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5,842 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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4,489 |
by tsztain Tue, 2018-12-11 13:41 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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5,711 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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5,049 |
by smlewis Mon, 2014-04-21 06:47 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
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5,150 |
by smlewis Mon, 2014-04-21 06:47 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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7,344 |
by attesor Wed, 2015-10-21 13:53 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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2,959 |
by dantimatter Wed, 2019-10-30 09:43 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
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6,199 |
by Anonymous Mon, 2014-04-21 06:47 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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5,437 |
by felipet Wed, 2015-02-11 05:13 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
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6,133 |
by brspurri Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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5,767 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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4,987 |
by AmelieH Wed, 2014-11-19 11:26 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
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4,437 |
by rmoretti Mon, 2016-09-05 10:59 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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2,711 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
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6,793 |
by rmoretti Tue, 2015-03-31 08:56 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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2,571 |
by brspurri Wed, 2020-06-03 13:20 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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5,185 |
by lanselibai Wed, 2014-10-15 03:52 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,452 |
by rmoretti Thu, 2017-01-19 09:11 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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2,460 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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2,658 |
by everyday847 Wed, 2020-05-20 08:52 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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2,766 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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4,469 |
by rmoretti Thu, 2020-01-30 15:42 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,536 |
by rmoretti Mon, 2014-04-21 06:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
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5,829 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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3,899 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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2,826 |
by smlewis Mon, 2019-09-23 11:42 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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5,402 |
by justin Mon, 2014-04-21 06:47 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
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6,638 |
by rmoretti Mon, 2014-04-21 10:47 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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2,808 |
by vmulligan Fri, 2020-04-10 02:54 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
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6,625 |
by smlewis Mon, 2014-04-21 06:47 |
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