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Rosetta 3 - Applications
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antibody.linuxgccrelease- output models don't have the same sequence as the input fasta by agctomer » Thu, 2021-01-21 15:35 |
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1,570 |
by agctomer Sun, 2021-01-31 01:06 |
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Structure prediction using true distance and angle constraint by maruhuang » Wed, 2019-08-21 02:29 |
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1,983 |
by maruhuang Thu, 2019-09-26 18:52 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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5,646 |
by rmoretti Mon, 2014-04-21 06:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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4,614 |
by fred Mon, 2014-04-21 06:48 |
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Specifying resfile in rosetta scripts by johnnytam100 » Mon, 2019-03-18 02:19 |
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3,101 |
by rmoretti Fri, 2019-03-29 09:30 |
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building a protein-dna homology model via cm_rosetta by y_atsmonraz » Wed, 2021-10-20 23:11 |
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1,256 |
by y_atsmonraz Tue, 2021-11-02 01:47 |
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Unable to understand fragment picking tutorial points. by Danielsebas » Thu, 2019-09-05 03:44 |
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2,346 |
by danpf Fri, 2019-09-06 11:29 |
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Relaxed proteins show higher clash score in molprobity results. by Wang Zhe » Fri, 2021-12-03 04:32 |
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1,698 |
by smlewis Wed, 2021-12-08 13:02 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
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5,113 |
by rmoretti Mon, 2014-02-24 09:12 |
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How to specify only design surface residues and loops by RosettaScripts? by johnnytam100 » Sun, 2019-04-07 21:47 |
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2,422 |
by johnnytam100 Wed, 2019-04-10 02:48 |
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Single Strand DNA (ssDNA) 3D structure prediction by mkoohim » Fri, 2012-04-06 00:52 |
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13,630 |
by smlewis Mon, 2014-04-21 06:47 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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4,541 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking Prepack protocol working or not ? by MJG » Mon, 2017-04-03 08:02 |
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3,284 |
by MJG Tue, 2017-04-04 23:59 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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3,789 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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4,407 |
by rmoretti Wed, 2015-09-09 12:08 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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4,923 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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4,616 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Prevention of the negatively charged Nitrogen protonation by coupled_moves by Corvin » Wed, 2020-11-18 02:56 |
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1,744 |
by Corvin Wed, 2020-11-25 02:58 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,243 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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4,773 |
by wsgosal Mon, 2014-04-21 06:48 |
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Options "-out:prefix" didn't work by maruhuang » Tue, 2019-09-10 05:42 |
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2,162 |
by danpf Fri, 2020-02-21 18:32 |
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Error with -patch_selectors by subha » Tue, 2017-06-06 14:40 |
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3,138 |
by subha Fri, 2017-06-09 15:42 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
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2,403 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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4,627 |
by protos_heis Mon, 2014-04-21 06:47 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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4,415 |
by smlewis Mon, 2014-04-21 06:47 |
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"OSError: [Errno 2]” in “clustering.py” by lanselibai » Sat, 2014-10-11 14:30 |
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6,842 |
by lanselibai Fri, 2014-10-17 05:10 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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5,051 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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4,762 |
by rmoretti Mon, 2014-04-21 06:47 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
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2,744 |
by Loki01 Thu, 2018-04-12 08:28 |
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ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator> by DGR95 » Fri, 2021-04-16 19:26 |
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1,542 |
by DGR95 Wed, 2021-04-28 16:13 |
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Template/Input length mismatch error during RosettaCM by marinok » Mon, 2020-05-04 13:12 |
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1,986 |
by marinok Mon, 2020-05-11 12:48 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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5,081 |
by jljbbc Mon, 2014-04-21 06:47 |
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null mutation with ddg_monomer by fred » Fri, 2012-05-11 07:16 |
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3,716 |
by fred Mon, 2014-04-21 06:47 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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4,621 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,836 |
by jadolfbr Mon, 2014-04-21 06:47 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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5,080 |
by justin Mon, 2014-04-21 06:47 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
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6,692 |
by linucks Mon, 2016-06-20 12:02 |
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Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking by Corvin » Wed, 2019-06-19 08:40 |
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3,140 |
by rmoretti Tue, 2019-07-09 10:13 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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4,612 |
by ks Mon, 2016-09-12 03:14 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
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6,581 |
by rmoretti Tue, 2015-11-24 15:30 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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5,501 |
by siciliu Thu, 2014-04-10 09:50 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
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2,704 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
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6,271 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta residue design for DNA binding by deltag » Wed, 2012-12-12 11:35 |
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8,516 |
by deltag Mon, 2014-04-21 06:47 |
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molfile to params polymer python errors by tsztain » Sun, 2018-12-02 15:38 |
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3,997 |
by tsztain Tue, 2018-12-11 13:41 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
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5,600 |
by Anonymous Mon, 2014-04-21 06:47 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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5,404 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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5,419 |
by jadolfbr Mon, 2014-04-21 06:48 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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4,393 |
by yperez Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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4,727 |
by wangyr Mon, 2014-04-21 06:47 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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2,584 |
by dantimatter Wed, 2019-10-30 09:43 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
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4,263 |
by yzhou Mon, 2014-04-21 06:47 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
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4,311 |
by Anonymous Mon, 2014-04-21 06:47 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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5,101 |
by felipet Wed, 2015-02-11 05:13 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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4,625 |
by AmelieH Wed, 2014-11-19 11:26 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
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6,301 |
by rmoretti Mon, 2014-04-21 06:47 |
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modeling an extracellular loop of a transmembrane protein by Hothman » Fri, 2016-08-12 06:16 |
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4,109 |
by rmoretti Mon, 2016-09-05 10:59 |
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How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure? by Sunyp_IM » Sun, 2020-11-08 08:07 |
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2,172 |
by Brahm Yachnin Wed, 2020-11-18 17:21 |
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RosettaAntibodyDesign: How can I run the protocol without allowing design? by brspurri » Tue, 2020-05-26 08:12 |
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2,222 |
by brspurri Wed, 2020-06-03 13:20 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
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5,071 |
by rmoretti Mon, 2014-04-21 06:47 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
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6,450 |
by rmoretti Tue, 2015-03-31 08:56 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,861 |
by lanselibai Wed, 2014-10-15 03:52 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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5,046 |
by michael_luntan Mon, 2014-04-21 06:47 |
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docking energies - deltadeltaG calculation by ast » Fri, 2013-07-19 07:30 |
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9,034 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,155 |
by rmoretti Thu, 2017-01-19 09:11 |
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relax.linuxgccrelease in multiple processors by jpfuenzalidawx » Thu, 2021-01-14 14:07 |
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1,965 |
by jadolfbr Fri, 2021-01-15 08:06 |
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Rna Denovo by helderveras » Wed, 2020-05-06 08:40 |
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2,330 |
by everyday847 Wed, 2020-05-20 08:52 |
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how to find help informations on rosetta_scripts in rosetta3.10 by xinmiaohe » Mon, 2019-08-26 14:48 |
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2,448 |
by xinmiaohe Tue, 2019-08-27 08:37 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
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5,187 |
by mkoohim Mon, 2014-04-21 06:47 |
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symmetric docking and constraints by ytao » Thu, 2013-05-02 12:08 |
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7,029 |
by attesor Wed, 2015-10-21 13:53 |
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Error during single state design by sujigeorge1979 » Sat, 2020-01-18 00:37 |
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3,741 |
by rmoretti Thu, 2020-01-30 15:42 |
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Error with the mpi version of simple_cycpep_predict by Florent Langenfeld » Wed, 2020-02-05 05:16 |
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2,429 |
by vmulligan Fri, 2020-04-10 02:54 |
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Rosetta RNA denovo huge memory usage (probable memory leak) by cdegut » Mon, 2017-10-30 16:41 |
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3,561 |
by cdegut Fri, 2017-11-03 05:50 |
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Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress) by Danielsebas » Mon, 2019-09-23 03:24 |
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2,480 |
by smlewis Mon, 2019-09-23 11:42 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
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6,266 |
by rmoretti Mon, 2014-04-21 10:47 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
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5,843 |
by brspurri Mon, 2014-04-21 06:47 |
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Snugdock_input by luicui » Wed, 2017-01-18 16:48 |
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3,660 |
by smlewis Fri, 2017-01-20 08:14 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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4,272 |
by rmoretti Thu, 2017-06-01 08:52 |
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Ligand Docking with Rosetta Scripts memory problem by Swillard » Thu, 2017-08-17 14:59 |
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4,096 |
by rmoretti Mon, 2018-11-12 14:31 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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4,741 |
by sjyang7 Sat, 2017-06-03 06:09 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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3,648 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
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6,414 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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5,370 |
by rmoretti Fri, 2015-04-24 12:02 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
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5,089 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Rosetta ScriptsFeatures Reporter issue by David Weis » Sun, 2017-03-12 08:19 |
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4,006 |
by David Weis Mon, 2017-03-13 10:59 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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3,322 |
by Yero Thu, 2019-07-18 01:39 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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4,536 |
by felipet Fri, 2017-06-16 11:42 |
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Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans? by ccottrell » Tue, 2020-05-05 20:30 |
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2,204 |
by jadolfbr Wed, 2020-05-06 11:37 |
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Parse error while reading in XML file in ROSETTA Scripts by rweisse » Fri, 2014-08-29 03:24 |
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8,433 |
by a-eatemadi@razi... Sun, 2017-08-06 03:49 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
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6,114 |
by rmoretti Mon, 2015-10-12 15:10 |
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snugdock(sequence position requested was greater than the number of residues in the pose) by lei » Thu, 2023-01-12 01:40 |
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1,435 |
by lei Fri, 2023-01-20 08:11 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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4,777 |
by smlewis Mon, 2014-04-21 06:47 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,223 |
by rmoretti Mon, 2014-04-21 06:47 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
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5,499 |
by smlewis Mon, 2014-04-21 06:47 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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4,787 |
by rmoretti Thu, 2017-08-24 08:19 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
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5,898 |
by Anonymous Mon, 2014-04-21 06:47 |
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Local docking: "manually place the two proteins facing each other" ? by mdeklotz » Fri, 2018-07-20 10:24 |
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3,563 |
by dfcoelho Tue, 2018-10-16 09:05 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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5,350 |
by smlewis Mon, 2014-04-21 06:47 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
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3,720 |
by attesor Thu, 2017-03-16 01:21 |
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How to concatenate the 3-mer and 9-mer files for RosettaCM? by lanselibai » Fri, 2020-05-08 05:38 |
5 |
2,501 |
by danpf Tue, 2020-05-12 10:58 |
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