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Rosetta 3 - Applications

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Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
4,458 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
4,058 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
4,635 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
1,993 by danpf
Fri, 2020-02-21 18:32
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
2,993 by subha
Fri, 2017-06-09 15:42
Normal topic Changing scoring function for fixbb protocol
by mdyini » Sat, 2012-07-07 18:43
4
3,572 by mdyini
Mon, 2014-04-21 06:47
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
2,186 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
5,438 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,273 by smlewis
Mon, 2014-04-21 06:47
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
6,702 by lanselibai
Fri, 2014-10-17 05:10
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
4,877 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,606 by Loki01
Thu, 2018-04-12 08:28
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
1,343 by DGR95
Wed, 2021-04-28 16:13
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
13,238 by smlewis
Mon, 2014-04-21 06:47
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
1,774 by marinok
Mon, 2020-05-11 12:48
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,509 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
5,101 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ]
by erpannec » Tue, 2022-08-09 05:42
4
424 by erpannec
Thu, 2022-09-15 05:17
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
5,318 by siciliu
Thu, 2014-04-10 09:50
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
5,738 by Anonymous
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
5,112 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
2,529 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
4,641 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
8,281 by deltag
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
3,755 by tsztain
Tue, 2018-12-11 13:41
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
5,238 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
5,256 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,390 by dantimatter
Wed, 2019-10-30 09:43
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
4,935 by felipet
Wed, 2015-02-11 05:13
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
4,465 by AmelieH
Wed, 2014-11-19 11:26
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
6,110 by rmoretti
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
3,949 by rmoretti
Mon, 2016-09-05 10:59
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
1,978 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
2,059 by brspurri
Wed, 2020-06-03 13:20
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
4,883 by justin
Mon, 2014-04-21 06:47
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
6,273 by rmoretti
Tue, 2015-03-31 08:56
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
4,717 by lanselibai
Wed, 2014-10-15 03:52
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
8,809 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
4,009 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,732 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
2,189 by everyday847
Wed, 2020-05-20 08:52
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
2,237 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
6,842 by attesor
Wed, 2015-10-21 13:53
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
3,372 by rmoretti
Thu, 2020-01-30 15:42
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
6,041 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
6,108 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
2,237 by vmulligan
Fri, 2020-04-10 02:54
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
5,412 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,399 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
2,299 by smlewis
Mon, 2019-09-23 11:42
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
5,703 by brspurri
Mon, 2014-04-21 06:47
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
3,492 by smlewis
Fri, 2017-01-20 08:14
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
4,230 by yperez
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
4,579 by wangyr
Mon, 2014-04-21 06:47
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
4,105 by rmoretti
Thu, 2017-06-01 08:52
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
4,098 by yzhou
Mon, 2014-04-21 06:47
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
3,920 by rmoretti
Mon, 2018-11-12 14:31
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
4,112 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,506 by sjyang7
Sat, 2017-06-03 06:09
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
3,402 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
4,932 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
5,203 by rmoretti
Fri, 2015-04-24 12:02
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
4,900 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
3,827 by David Weis
Mon, 2017-03-13 10:59
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
3,141 by Yero
Thu, 2019-07-18 01:39
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
4,884 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
4,319 by felipet
Fri, 2017-06-16 11:42
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
2,039 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
8,156 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
5,909 by rmoretti
Mon, 2015-10-12 15:10
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
4,595 by rmoretti
Thu, 2017-08-24 08:19
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
4,061 by rmoretti
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
5,329 by smlewis
Mon, 2014-04-21 06:47
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
3,311 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
3,530 by attesor
Thu, 2017-03-16 01:21
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
4,996 by mkoohim
Mon, 2014-04-21 06:47
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
2,315 by danpf
Tue, 2020-05-12 10:58
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
2,063 by Astghik
Thu, 2020-10-15 00:48
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
4,369 by rmoretti
Mon, 2015-02-09 12:04
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
3,596 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
5,198 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
3,903 by aroop
Mon, 2014-04-21 06:47
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
5,543 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
6,211 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
3,324 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
1,604 by nc-ring
Tue, 2021-05-04 12:26
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
3,205 by smlewis
Tue, 2017-07-11 07:53
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
6,515 by linucks
Mon, 2016-06-20 12:02
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
2,903 by rmoretti
Tue, 2019-07-09 10:13
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
4,458 by ks
Mon, 2016-09-12 03:14
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
4,604 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
6,400 by rmoretti
Tue, 2015-11-24 15:30
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
5,518 by lzx32
Mon, 2014-04-21 06:47
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
5,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
5,136 by lanselibai
Tue, 2014-11-11 15:28
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,571 by franfdez
Mon, 2014-04-21 06:47
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
7,606 by rmoretti
Fri, 2014-02-07 08:01
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
5,026 by rmoretti
Thu, 2014-11-20 10:46
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
6,561 by jarod
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
7,079 by smlewis
Mon, 2014-04-21 06:47
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