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Rosetta 3 - Applications

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Normal topic Re: Glutamic acid protonation
by bharat_46010 » Fri, 2017-02-10 03:08
4
4,382 by rmoretti
Mon, 2017-02-20 08:09
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
4,900 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Positive scores with SymmDock in helical symmetry
by kxiao » Tue, 2014-02-11 07:37
4
4,391 by kxiao
Thu, 2014-06-05 08:37
Normal topic mr_protocols with symmetry and ligand
by jhm13c » Mon, 2017-02-27 11:59
4
3,438 by jhm13c
Thu, 2017-03-02 12:01
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
5,406 by jljbbc
Mon, 2014-04-21 06:47
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
5,133 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
2,348 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
6,472 by rmoretti
Thu, 2015-04-16 11:23
Normal topic Error while running "make_fragments.pl".....[blastpgp] ERROR: Arguments must start with '-'
by AG88 » Thu, 2011-11-03 01:25
4
7,385 by weitzner
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
2,333 by brspurri
Tue, 2020-08-18 09:57
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
4,803 by rmoretti
Mon, 2014-04-21 06:47
Normal topic side chain repacking error
by malkeet.singh » Thu, 2017-12-07 04:49
4
3,626 by smlewis
Wed, 2017-12-13 09:54
Normal topic Any backrub expert?
by johnnytam100 » Fri, 2019-03-01 01:58
4
3,160 by johnnytam100
Sun, 2019-03-03 23:42
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
1,761 by nannemdp
Wed, 2021-02-03 08:52
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
4,056 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax protein with multi-conformer bound ligand
by xfradera » Thu, 2023-01-12 09:10
4
2,814 by rmoretti
Mon, 2023-02-06 15:06
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
5,426 by afmo
Thu, 2014-05-22 01:19
Normal topic simple_cycpep_predict - Design mode - The base name "ARG" was added more than once
by almeida85 » Thu, 2022-08-04 02:57
4
1,138 by almeida85
Thu, 2022-08-11 00:58
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
5,984 by lanselibai
Sun, 2015-03-01 15:00
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,958 by fred
Mon, 2014-04-21 06:47
Normal topic How to run simulations with non-canonical amino acids?
by Denise » Thu, 2017-06-08 07:50
4
3,757 by Denise
Thu, 2017-06-15 04:26
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
5,779 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
2,112 by haom
Tue, 2020-06-16 05:55
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
4,532 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
4,536 by cossio
Mon, 2015-01-19 07:10
Normal topic Can I assume the outputs from different runs are from a same batch?
by lanselibai » Mon, 2014-11-03 06:34
4
4,429 by lanselibai
Mon, 2014-11-03 13:15
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,891 by agctomer
Sun, 2021-01-31 01:06
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
2,271 by maruhuang
Thu, 2019-09-26 18:52
Normal topic Filter for fixed-bb design using RosettaScript?
by chrisHKL » Fri, 2020-02-28 19:47
4
2,200 by vmulligan
Mon, 2020-03-02 13:40
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
4,866 by fred
Mon, 2014-04-21 06:48
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
3,475 by rmoretti
Fri, 2019-03-29 09:30
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
6,731 by IAndre
Mon, 2014-04-21 06:47
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
1,602 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
5,438 by rmoretti
Mon, 2014-02-24 09:12
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
2,743 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic ligand dock question
by sacch » Sun, 2012-05-20 19:49
4
4,251 by sacch
Mon, 2014-04-21 06:47
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
2,666 by danpf
Fri, 2019-09-06 11:29
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
2,288 by smlewis
Wed, 2021-12-08 13:02
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
5,475 by rmoretti
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,709 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
3,620 by MJG
Tue, 2017-04-04 23:59
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
5,393 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
4,678 by rmoretti
Wed, 2015-09-09 12:08
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,856 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
5,210 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
4,933 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
2,117 by Corvin
Wed, 2020-11-25 02:58
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
3,433 by subha
Fri, 2017-06-09 15:42
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
5,040 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
2,486 by danpf
Fri, 2020-02-21 18:32
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
2,814 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
4,852 by smlewis
Mon, 2014-04-21 06:47
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
5,116 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
3,988 by dgront
Mon, 2014-04-21 06:47
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
4,582 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
7,121 by lanselibai
Fri, 2014-10-17 05:10
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
5,971 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
8,838 by deltag
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
3,848 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
3,679 by smlewis
Tue, 2017-07-11 07:53
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
2,220 by nc-ring
Tue, 2021-05-04 12:26
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
7,070 by linucks
Mon, 2016-06-20 12:02
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
3,580 by rmoretti
Tue, 2019-07-09 10:13
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
4,964 by ks
Mon, 2016-09-12 03:14
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
6,948 by rmoretti
Tue, 2015-11-24 15:30
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
6,656 by rmoretti
Mon, 2014-04-21 06:47
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
5,870 by siciliu
Thu, 2014-04-10 09:50
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
3,082 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
9,411 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
6,799 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
5,842 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
4,489 by tsztain
Tue, 2018-12-11 13:41
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
5,711 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
5,049 by smlewis
Mon, 2014-04-21 06:47
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
5,150 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
7,344 by attesor
Wed, 2015-10-21 13:53
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,959 by dantimatter
Wed, 2019-10-30 09:43
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
6,199 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
5,437 by felipet
Wed, 2015-02-11 05:13
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
6,133 by brspurri
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
5,767 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
4,987 by AmelieH
Wed, 2014-11-19 11:26
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
4,437 by rmoretti
Mon, 2016-09-05 10:59
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
2,711 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
6,793 by rmoretti
Tue, 2015-03-31 08:56
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
2,571 by brspurri
Wed, 2020-06-03 13:20
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
5,185 by lanselibai
Wed, 2014-10-15 03:52
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
4,452 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
2,460 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
2,658 by everyday847
Wed, 2020-05-20 08:52
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
2,766 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
4,469 by rmoretti
Thu, 2020-01-30 15:42
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
4,536 by rmoretti
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
5,829 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,899 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
2,826 by smlewis
Mon, 2019-09-23 11:42
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
5,402 by justin
Mon, 2014-04-21 06:47
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
6,638 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
2,808 by vmulligan
Fri, 2020-04-10 02:54
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
6,625 by smlewis
Mon, 2014-04-21 06:47
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