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Rosetta 3 - Applications

Topic / Topic starter Repliessort descending Views Last post
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
1,570 by agctomer
Sun, 2021-01-31 01:06
Normal topic Structure prediction using true distance and angle constraint
by maruhuang » Wed, 2019-08-21 02:29
4
1,983 by maruhuang
Thu, 2019-09-26 18:52
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
5,646 by rmoretti
Mon, 2014-04-21 06:47
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
4,614 by fred
Mon, 2014-04-21 06:48
Normal topic Specifying resfile in rosetta scripts
by johnnytam100 » Mon, 2019-03-18 02:19
4
3,101 by rmoretti
Fri, 2019-03-29 09:30
Normal topic building a protein-dna homology model via cm_rosetta
by y_atsmonraz » Wed, 2021-10-20 23:11
4
1,256 by y_atsmonraz
Tue, 2021-11-02 01:47
Normal topic Unable to understand fragment picking tutorial points.
by Danielsebas » Thu, 2019-09-05 03:44
4
2,346 by danpf
Fri, 2019-09-06 11:29
Normal topic Relaxed proteins show higher clash score in molprobity results.
by Wang Zhe » Fri, 2021-12-03 04:32
4
1,698 by smlewis
Wed, 2021-12-08 13:02
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
5,113 by rmoretti
Mon, 2014-02-24 09:12
Normal topic How to specify only design surface residues and loops by RosettaScripts?
by johnnytam100 » Sun, 2019-04-07 21:47
4
2,422 by johnnytam100
Wed, 2019-04-10 02:48
Normal topic Single Strand DNA (ssDNA) 3D structure prediction
by mkoohim » Fri, 2012-04-06 00:52
4
13,630 by smlewis
Mon, 2014-04-21 06:47
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
4,541 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
3,284 by MJG
Tue, 2017-04-04 23:59
Normal topic comparative modelling and broker
by felipet » Tue, 2013-02-05 08:33
4
3,789 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
4,407 by rmoretti
Wed, 2015-09-09 12:08
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
4,923 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
4,616 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
1,744 by Corvin
Wed, 2020-11-25 02:58
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
4,243 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
4,773 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Options "-out:prefix" didn't work
by maruhuang » Tue, 2019-09-10 05:42
4
2,162 by danpf
Fri, 2020-02-21 18:32
Normal topic Error with -patch_selectors
by subha » Tue, 2017-06-06 14:40
4
3,138 by subha
Fri, 2017-06-09 15:42
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
2,403 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
4,627 by protos_heis
Mon, 2014-04-21 06:47
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,415 by smlewis
Mon, 2014-04-21 06:47
Normal topic "OSError: [Errno 2]” in “clustering.py”
by lanselibai » Sat, 2014-10-11 14:30
4
6,842 by lanselibai
Fri, 2014-10-17 05:10
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
5,051 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
4,762 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Clustering issue
by Loki01 » Thu, 2018-03-29 10:16
4
2,744 by Loki01
Thu, 2018-04-12 08:28
Normal topic ligand_docking tutorial help: do crystal_complex.pdb files need to be prepped before using with <InterfaceScoreCalculator>
by DGR95 » Fri, 2021-04-16 19:26
4
1,542 by DGR95
Wed, 2021-04-28 16:13
Normal topic Template/Input length mismatch error during RosettaCM
by marinok » Mon, 2020-05-04 13:12
4
1,986 by marinok
Mon, 2020-05-11 12:48
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
5,081 by jljbbc
Mon, 2014-04-21 06:47
Normal topic null mutation with ddg_monomer
by fred » Fri, 2012-05-11 07:16
4
3,716 by fred
Mon, 2014-04-21 06:47
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,621 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
4,836 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
5,080 by justin
Mon, 2014-04-21 06:47
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
6,692 by linucks
Mon, 2016-06-20 12:02
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
3,140 by rmoretti
Tue, 2019-07-09 10:13
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
4,612 by ks
Mon, 2016-09-12 03:14
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
6,581 by rmoretti
Tue, 2015-11-24 15:30
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
5,501 by siciliu
Thu, 2014-04-10 09:50
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
2,704 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
6,271 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
8,516 by deltag
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
3,997 by tsztain
Tue, 2018-12-11 13:41
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
5,600 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
5,404 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
5,419 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
4,393 by yperez
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
4,727 by wangyr
Mon, 2014-04-21 06:47
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,584 by dantimatter
Wed, 2019-10-30 09:43
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
4,263 by yzhou
Mon, 2014-04-21 06:47
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
4,311 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
5,101 by felipet
Wed, 2015-02-11 05:13
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
4,625 by AmelieH
Wed, 2014-11-19 11:26
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
6,301 by rmoretti
Mon, 2014-04-21 06:47
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
4,109 by rmoretti
Mon, 2016-09-05 10:59
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
2,172 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
2,222 by brspurri
Wed, 2020-06-03 13:20
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
5,071 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
6,450 by rmoretti
Tue, 2015-03-31 08:56
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
4,861 by lanselibai
Wed, 2014-10-15 03:52
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
5,046 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
9,034 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
4,155 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,965 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
2,330 by everyday847
Wed, 2020-05-20 08:52
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
2,448 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
5,187 by mkoohim
Mon, 2014-04-21 06:47
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
7,029 by attesor
Wed, 2015-10-21 13:53
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
3,741 by rmoretti
Thu, 2020-01-30 15:42
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
2,429 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,561 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
2,480 by smlewis
Mon, 2019-09-23 11:42
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
6,266 by rmoretti
Mon, 2014-04-21 10:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
5,843 by brspurri
Mon, 2014-04-21 06:47
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
3,660 by smlewis
Fri, 2017-01-20 08:14
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
4,272 by rmoretti
Thu, 2017-06-01 08:52
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
4,096 by rmoretti
Mon, 2018-11-12 14:31
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,741 by sjyang7
Sat, 2017-06-03 06:09
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
3,648 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
6,414 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
5,370 by rmoretti
Fri, 2015-04-24 12:02
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
5,089 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
4,006 by David Weis
Mon, 2017-03-13 10:59
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
3,322 by Yero
Thu, 2019-07-18 01:39
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
4,536 by felipet
Fri, 2017-06-16 11:42
Normal topic Can the Rosetta Antibody Design (RAbD) protocol incorporate glycans?
by ccottrell » Tue, 2020-05-05 20:30
5
2,204 by jadolfbr
Wed, 2020-05-06 11:37
Normal topic Parse error while reading in XML file in ROSETTA Scripts
by rweisse » Fri, 2014-08-29 03:24
5
8,433 by a-eatemadi@razi...
Sun, 2017-08-06 03:49
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
6,114 by rmoretti
Mon, 2015-10-12 15:10
Normal topic snugdock(sequence position requested was greater than the number of residues in the pose)
by lei » Thu, 2023-01-12 01:40
5
1,435 by lei
Fri, 2023-01-20 08:11
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
4,777 by smlewis
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
4,223 by rmoretti
Mon, 2014-04-21 06:47
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
5,499 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
4,787 by rmoretti
Thu, 2017-08-24 08:19
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
5,898 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Local docking: "manually place the two proteins facing each other" ?
by mdeklotz » Fri, 2018-07-20 10:24
5
3,563 by dfcoelho
Tue, 2018-10-16 09:05
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
5,350 by smlewis
Mon, 2014-04-21 06:47
Normal topic conway2016 correction on beta-nov15?
by attesor » Wed, 2017-03-15 05:26
5
3,720 by attesor
Thu, 2017-03-16 01:21
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
2,501 by danpf
Tue, 2020-05-12 10:58
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