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Rosetta 3 - Applications

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Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
4,543 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic How to concatenate the 3-mer and 9-mer files for RosettaCM?
by lanselibai » Fri, 2020-05-08 05:38
5
1,930 by danpf
Tue, 2020-05-12 10:58
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
1,639 by Astghik
Thu, 2020-10-15 00:48
Normal topic how to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:40
5
3,034 by xinmiaohe
Fri, 2019-10-04 08:54
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
4,014 by rmoretti
Mon, 2015-02-09 12:04
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
7,897 by deltag
Mon, 2014-04-21 06:47
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
4,815 by brianmlee
Mon, 2014-11-24 19:40
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
4,615 by mkoohim
Mon, 2014-04-21 06:47
Normal topic How to minimize the decoys obtained from backrub?
by Vedasheersh » Wed, 2017-06-14 10:26
5
2,945 by SenyorDrew
Fri, 2017-06-30 09:47
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
2,884 by smlewis
Tue, 2017-07-11 07:53
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
5,744 by rmoretti
Mon, 2014-04-21 06:47
Normal topic trRosetta protocol Segmentation Fault
by nc-ring » Wed, 2021-04-28 11:57
5
1,116 by nc-ring
Tue, 2021-05-04 12:26
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
4,068 by ks
Mon, 2016-09-12 03:14
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
6,110 by linucks
Mon, 2016-06-20 12:02
Normal topic Error with talaris2014.wts, which leads to a garbade scorefunction in loop modelling for protein-protein docking
by Corvin » Wed, 2019-06-19 08:40
5
2,396 by rmoretti
Tue, 2019-07-09 10:13
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
8,340 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
5,981 by rmoretti
Tue, 2015-11-24 15:30
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
4,958 by siciliu
Thu, 2014-04-10 09:50
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
5,850 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
2,128 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic symmetric docking and constraints
by ytao » Thu, 2013-05-02 12:08
5
6,402 by attesor
Wed, 2015-10-21 13:53
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
4,286 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
5,434 by Anonymous
Mon, 2014-04-21 06:47
Normal topic molfile to params polymer python errors
by tsztain » Sun, 2018-12-02 15:38
5
3,259 by tsztain
Tue, 2018-12-11 13:41
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
4,883 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
5,402 by brspurri
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
4,723 by smlewis
Mon, 2014-04-21 06:47
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,898 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,016 by dantimatter
Wed, 2019-10-30 09:43
Normal topic modeling an extracellular loop of a transmembrane protein
by Hothman » Fri, 2016-08-12 06:16
5
3,615 by rmoretti
Mon, 2016-09-05 10:59
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
1,547 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
4,277 by smlewis
Mon, 2014-04-21 06:47
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
4,573 by felipet
Wed, 2015-02-11 05:13
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
4,121 by AmelieH
Wed, 2014-11-19 11:26
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
1,702 by brspurri
Wed, 2020-06-03 13:20
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
5,924 by rmoretti
Tue, 2015-03-31 08:56
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
4,340 by lanselibai
Wed, 2014-10-15 03:52
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
3,649 by rmoretti
Thu, 2017-01-19 09:11
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
1,269 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
1,832 by everyday847
Wed, 2020-05-20 08:52
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
3,759 by rmoretti
Mon, 2014-04-21 06:47
Normal topic how to find help informations on rosetta_scripts in rosetta3.10
by xinmiaohe » Mon, 2019-08-26 14:48
5
1,843 by xinmiaohe
Tue, 2019-08-27 08:37
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
5,010 by smlewis
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
4,518 by justin
Mon, 2014-04-21 06:47
Normal topic Error during single state design
by sujigeorge1979 » Sat, 2020-01-18 00:37
5
2,711 by rmoretti
Thu, 2020-01-30 15:42
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
5,698 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Error with the mpi version of simple_cycpep_predict
by Florent Langenfeld » Wed, 2020-02-05 05:16
5
1,883 by vmulligan
Fri, 2020-04-10 02:54
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
3,031 by cdegut
Fri, 2017-11-03 05:50
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
1,914 by smlewis
Mon, 2019-09-23 11:42
Normal topic Snugdock_input
by luicui » Wed, 2017-01-18 16:48
5
3,139 by smlewis
Fri, 2017-01-20 08:14
Normal topic How to choose designed antibody
by Sunyp_IM » Wed, 2020-06-24 10:06
5
1,789 by jadolfbr
Fri, 2020-07-24 07:24
Normal topic Ligand Docking with Rosetta Scripts memory problem
by Swillard » Thu, 2017-08-17 14:59
5
3,514 by rmoretti
Mon, 2018-11-12 14:31
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
3,732 by rmoretti
Thu, 2017-06-01 08:52
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
3,000 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
5,686 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric Minimization
by aroop » Mon, 2012-12-17 11:45
5
3,635 by aroop
Mon, 2014-04-21 06:47
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,062 by sjyang7
Sat, 2017-06-03 06:09
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
4,073 by Corvin
Tue, 2019-10-15 01:12
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
5,314 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic Loop modeling - the appropriate way to model a peptide insertion?
by xding » Thu, 2018-08-02 15:30
6
3,291 by smlewis
Wed, 2018-08-08 15:48
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
4,105 by rmoretti
Tue, 2017-07-18 09:00
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
5,779 by petrikigor
Mon, 2014-04-21 06:47
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
5,143 by tfliu
Mon, 2014-04-21 06:48
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
1,916 by rmoretti
Tue, 2020-07-14 10:54
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
4,365 by rmoretti
Mon, 2017-01-23 08:52
Normal topic jd2 quits before reaching -nstruct # in roseta_scripts.mpi.linuxgccrelease
by fradom » Mon, 2017-11-27 02:55
6
3,400 by fradom
Tue, 2017-12-05 01:52
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
6,353 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can't generate a cst file to use with ddg_monomer application
by ctqwong » Sat, 2021-03-13 03:53
6
1,365 by ctqwong
Thu, 2021-03-18 02:04
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
1,672 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
5,427 by Gerdes
Fri, 2014-02-07 06:48
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
6,158 by jarod
Mon, 2014-04-21 06:47
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
5,745 by eyong123
Mon, 2015-06-29 04:44
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
5,134 by eskici
Mon, 2014-04-21 06:47
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
1,766 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
6,014 by skovacs
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
6,685 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
4,390 by xfliu
Mon, 2014-04-21 06:47
Normal topic How to define pi-pi stacking in cst file?
by lzx32 » Mon, 2011-07-04 23:47
6
6,627 by lzx32
Mon, 2014-04-21 06:47
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
4,943 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
5,786 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
4,718 by lanselibai
Tue, 2014-11-11 15:28
Normal topic rosetta_2013wk52: make_fragments.pl failed
by fred » Thu, 2014-01-30 12:41
6
7,144 by rmoretti
Fri, 2014-02-07 08:01
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
4,627 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
5,099 by lzx32
Mon, 2014-04-21 06:47
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
4,761 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,230 by franfdez
Mon, 2014-04-21 06:47
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
4,244 by Loki01
Thu, 2018-02-15 13:54
Normal topic Missing "Bio.PDB" module when running "remove_loop_coords.py"
by lanselibai » Mon, 2014-09-29 04:34
6
8,447 by lanselibai
Wed, 2014-10-01 02:13
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
5,657 by Marius1987
Fri, 2016-02-05 07:20
Normal topic "sparks failed" error when running "make_fragments.pl"?
by Danielsebas » Tue, 2019-09-03 03:43
6
2,553 by Jacob_Verburgt
Tue, 2020-03-10 14:39
Normal topic Multistate design output
by tong » Wed, 2018-06-20 00:21
6
2,750 by tong
Sun, 2018-06-24 23:30
Normal topic Cannot get a negative score after relax
by kxiao » Tue, 2014-01-28 22:28
6
6,450 by rmoretti
Mon, 2014-04-21 06:48
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
4,085 by petrikigor
Mon, 2014-04-21 06:47
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
5,127 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
6,298 by rmoretti
Wed, 2015-09-02 12:43
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
5,883 by rmoretti
Wed, 2017-01-11 12:53
Normal topic How to model missing residues on a protein from multiple PDB files?
by cossio » Fri, 2015-08-21 07:18
6
10,805 by rmoretti
Fri, 2015-09-11 13:27
Normal topic terminal amino acids of gap has incomplete valency
by malkeet.singh » Wed, 2017-11-29 05:20
6
3,011 by rmoretti
Fri, 2017-12-01 12:05
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
4,681 by msardejani
Sat, 2016-10-01 12:55
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
5,321 by jadolfbr
Tue, 2015-04-07 10:50
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