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Rosetta 3 - Applications
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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599 |
by matteoferla Wed, 2022-07-20 10:50 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,868 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,663 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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835 |
by CameronJA Tue, 2021-06-15 20:02 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,352 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,232 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,294 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,410 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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2,037 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,283 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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1,370 |
by danpf Sun, 2020-08-30 22:23 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,723 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,530 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,620 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,250 |
by bjharris Wed, 2020-07-01 23:25 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
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2,938 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,438 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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2,028 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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1,025 |
by brspurri Wed, 2021-01-20 08:11 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,265 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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927 |
by rmoretti Fri, 2020-11-27 10:47 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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3,799 |
by rmoretti Mon, 2014-04-21 06:47 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,637 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,242 |
by matteoferla Thu, 2020-07-02 07:27 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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5,187 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,226 |
by smlewis Fri, 2018-07-27 13:32 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,152 |
by matteoferla Mon, 2020-05-04 01:43 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,605 |
by rmoretti Mon, 2014-04-21 06:48 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,274 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,612 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,243 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,126 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,613 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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1,937 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,318 |
by smlewis Tue, 2019-09-24 12:43 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,220 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,515 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,473 |
by kamau Wed, 2017-12-13 14:31 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,105 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,126 |
by everyday847 Fri, 2019-08-23 04:08 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,359 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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4,176 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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779 |
by vmulligan Wed, 2021-04-28 12:59 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,455 |
by jeliazkov Mon, 2019-06-17 06:03 |
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placing a constraint during structure prediction by cbala » Thu, 2011-04-07 08:54 |
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2,991 |
by ic3reyes Mon, 2014-04-21 06:47 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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2,073 |
by smlewis Mon, 2014-04-21 06:47 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,231 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,458 |
by Payne Tue, 2022-06-21 07:25 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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2,070 |
by rmoretti Mon, 2015-05-25 12:30 |
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FloppyTail vs. Remodel for linkers by attesor » Mon, 2014-07-07 08:36 |
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2,072 |
by smlewis Mon, 2014-07-07 11:58 |
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Error in Loop modeling and other queries by ashu4487 » Wed, 2016-05-11 18:23 |
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2,005 |
by rmoretti Fri, 2016-06-17 10:15 |
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"Angle constraint: 0-length bonds" error by purvi24 » Sun, 2019-07-28 10:09 |
1 |
1,308 |
by rmoretti Mon, 2019-08-26 12:49 |
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Destination of score.fsc file by anirbanzz » Wed, 2011-04-20 23:30 |
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2,628 |
by smlewis Mon, 2014-04-21 06:47 |
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Instructing design scripts to use noncanonical AA instead of canonical by zcrook » Tue, 2014-11-25 10:43 |
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1,886 |
by rmoretti Wed, 2014-11-26 07:51 |
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Modeling the structure of camel single domain antibody by Sunyp_IM » Mon, 2018-01-08 00:34 |
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1,987 |
by Sunyp_IM Mon, 2018-01-08 00:55 |
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Usage of the TaskOperations "RestrictToCDRsAndNeighbors" by johnnytam100 » Wed, 2019-04-10 02:58 |
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1,330 |
by rmoretti Wed, 2019-07-10 10:10 |
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Remodel: the pose does not have residue with chain=H, PDBnum=114 by lanselibai » Wed, 2019-12-25 13:35 |
1 |
1,743 |
by lanselibai Fri, 2019-12-27 09:38 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
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829 |
by smlewis Wed, 2021-03-24 14:59 |
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Disulfidize- "Extra content at the end of the document" by ldlamini » Tue, 2022-05-17 02:37 |
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749 |
by rmoretti Tue, 2022-05-17 07:29 |
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Loop modeling: KIC with fragments producing unusual models by kamau » Mon, 2015-06-01 12:06 |
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2,031 |
by rmoretti Sat, 2015-06-20 20:07 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
1,965 |
by rmoretti Fri, 2016-10-14 08:56 |
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Problem passing a list of PDB files to minimize_with_cst by dolevrahat » Sun, 2018-11-18 16:13 |
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1,550 |
by rmoretti Wed, 2018-11-21 15:31 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
1 |
2,421 |
by smlewis Mon, 2014-04-21 06:47 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
1 |
2,554 |
by smlewis Mon, 2014-04-21 06:47 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
1 |
975 |
by matteoferla Mon, 2020-05-04 02:02 |
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Old Knotfind algorithm by Martin Floor » Thu, 2022-09-22 07:28 |
1 |
664 |
by rmoretti Fri, 2022-09-23 09:38 |
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Docking on mpi. by Pernille » Mon, 2014-07-28 08:40 |
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2,711 |
by rmoretti Mon, 2014-08-04 14:51 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
1,795 |
by rmoretti Fri, 2015-01-02 11:06 |
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Membrane Abinitio modeling by bharat_46010 » Mon, 2017-03-13 22:39 |
1 |
1,509 |
by benhardy Wed, 2020-09-30 04:24 |
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missing atom number 5 atom name CB by ajaniharesh » Fri, 2019-04-26 12:08 |
1 |
1,568 |
by rmoretti Fri, 2019-04-26 12:13 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
1 |
1,137 |
by jadolfbr Tue, 2020-01-28 09:13 |
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molfile_to_params script error by pablogalazdavison » Tue, 2015-07-07 21:22 |
1 |
2,236 |
by rmoretti Tue, 2015-07-14 14:59 |
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Threading with Ligand by ekwan » Thu, 2018-12-06 15:10 |
1 |
1,312 |
by rmoretti Fri, 2019-03-29 13:21 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
1 |
1,215 |
by jadolfbr Thu, 2019-09-19 08:53 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
0 |
806 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
0 |
1,148 |
by benhardy Wed, 2020-09-30 08:42 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
860 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
0 |
1,169 |
by rtorquato Fri, 2022-11-25 12:05 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
0 |
1,052 |
by evo_umich Mon, 2018-04-02 12:13 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
477 |
by zmfowler Thu, 2022-07-14 05:34 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
0 |
1,636 |
by David Hoover Mon, 2014-04-21 06:47 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
651 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
0 |
1,483 |
by shaunmk Mon, 2015-04-27 02:33 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
587 |
by sam_dc Sat, 2021-10-09 05:38 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
672 |
by brspurri Fri, 2020-08-28 09:11 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,396 |
by Marius1987 Sun, 2016-04-10 12:09 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
810 |
by Corvin Thu, 2020-04-02 00:16 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
0 |
816 |
by engand93 Wed, 2019-03-27 02:43 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,211 |
by G Mustafa Wed, 2018-10-17 05:41 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
754 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
629 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
482 |
by GebauerJ Tue, 2022-08-16 07:44 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,555 |
by Sandy Tue, 2016-05-31 18:48 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
812 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
0 |
564 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
868 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
769 |
by Corvin Wed, 2020-12-30 09:21 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
723 |
by memilton Thu, 2021-12-16 09:09 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
0 |
807 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
0 |
486 |
by nrollins Mon, 2021-07-26 14:16 |
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