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Rosetta 3 - Applications
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,397 |
by rmoretti Wed, 2018-02-21 15:21 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,042 |
by danpf Fri, 2020-02-21 18:23 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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481 |
by adriancmf25 Thu, 2022-07-28 02:09 |
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Ligand docking cannot open the protein file by swarekwood » Tue, 2017-10-17 08:17 |
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1,294 |
by rmoretti Tue, 2017-10-17 09:03 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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1,695 |
by jeliazkov Fri, 2018-12-07 12:51 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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993 |
by nannemdp Sun, 2020-06-07 08:01 |
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Make Fragments by Run » Mon, 2013-11-11 05:31 |
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2,412 |
by smlewis Mon, 2014-04-21 06:48 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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1,144 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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Python2 script in Rosetta3.13 by ddhoyo » Wed, 2021-09-15 04:05 |
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771 |
by matteoferla Wed, 2021-09-15 06:04 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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2,741 |
by smlewis Mon, 2014-05-12 08:32 |
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Symmetry definition for apolar helix by vanrooyenjason » Tue, 2016-01-05 05:20 |
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2,826 |
by rmoretti Fri, 2016-04-29 09:21 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
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1,231 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Expected density by GabrielDucrocq » Thu, 2022-07-14 06:38 |
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432 |
by matteoferla Wed, 2022-07-20 10:50 |
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No interface for protein - Interface Analyzer by aloshbau » Tue, 2013-05-21 21:00 |
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2,519 |
by jarod Mon, 2014-04-21 06:47 |
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AbinitioRelax Disulfide Bonds are not being retained by brspurri » Wed, 2011-09-28 13:55 |
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4,001 |
by parmef Mon, 2014-04-21 06:47 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,791 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,591 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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743 |
by CameronJA Tue, 2021-06-15 20:02 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,250 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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2,121 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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2,198 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,297 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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1,957 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,205 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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1,197 |
by danpf Sun, 2020-08-30 22:23 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,648 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,456 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,552 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,177 |
by bjharris Wed, 2020-07-01 23:25 |
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trouble in floppytail modelling by ytao » Thu, 2013-06-27 13:15 |
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2,182 |
by ytao Mon, 2014-04-21 06:48 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,953 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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947 |
by brspurri Wed, 2021-01-20 08:11 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,191 |
by smlewis Mon, 2014-04-21 06:47 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,187 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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836 |
by rmoretti Fri, 2020-11-27 10:47 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
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3,004 |
by jadolfbr Mon, 2014-04-21 06:47 |
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relax VS. backrub by jiongzhang » Mon, 2012-07-02 14:52 |
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2,277 |
by smlewis Mon, 2014-04-21 06:47 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,563 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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1,151 |
by matteoferla Thu, 2020-07-02 07:27 |
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error mesages from RosettaDock by AlanZhao » Mon, 2011-03-21 11:42 |
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2,274 |
by smlewis Mon, 2014-04-21 06:47 |
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Surface accessible residue as a constraint. by arthuc01 » Fri, 2012-03-09 23:27 |
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1,997 |
by smlewis Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,148 |
by smlewis Fri, 2018-07-27 13:32 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,050 |
by matteoferla Mon, 2020-05-04 01:43 |
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Representing Cross-linked nitrogens by jjlee2 » Sat, 2011-11-26 18:42 |
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2,189 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,543 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,175 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
1 |
1,044 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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modeling 4 linkers between 2 domains by pdbb » Thu, 2013-05-16 08:23 |
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2,168 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
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3,589 |
by smlewis Mon, 2014-04-21 06:47 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,539 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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1,850 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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1,222 |
by smlewis Tue, 2019-09-24 12:43 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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3,135 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,422 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,390 |
by kamau Wed, 2017-12-13 14:31 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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2,023 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,053 |
by everyday847 Fri, 2019-08-23 04:08 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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698 |
by vmulligan Wed, 2021-04-28 12:59 |
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FlexPepDock in RosettaScripts keeps running by gw » Tue, 2012-08-21 12:31 |
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2,354 |
by smlewis Mon, 2014-04-21 06:47 |
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interface_delta ligand_docking by Prasanth Kumar » Tue, 2013-06-18 08:37 |
1 |
2,343 |
by rmoretti Mon, 2014-04-21 06:48 |
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Flexible peptide docking with flexible receptor backbone by tevang » Fri, 2012-09-14 11:18 |
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2,486 |
by smlewis Mon, 2014-04-21 06:47 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,154 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
2,121 |
by Payne Tue, 2022-06-21 07:25 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,993 |
by rmoretti Mon, 2015-05-25 12:30 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,365 |
by jeliazkov Mon, 2019-06-17 06:03 |
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Urgent issue: Error with submitting a new Rosetta-Vienna RNP-ddG job by eyaaaan » Sun, 2022-08-07 22:03 |
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344 |
by eyaaaan Tue, 2022-08-09 21:59 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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593 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
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800 |
by Ruska322 Sat, 2019-09-07 05:21 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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493 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
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1,586 |
by David Hoover Mon, 2014-04-21 06:47 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
0 |
526 |
by code_Monkey Mon, 2021-04-05 10:40 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,016 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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913 |
by sn Thu, 2017-10-05 17:07 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
0 |
626 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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487 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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758 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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1,072 |
by benhardy Wed, 2020-09-30 08:42 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
0 |
739 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
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1,021 |
by rtorquato Fri, 2022-11-25 12:05 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
0 |
994 |
by evo_umich Mon, 2018-04-02 12:13 |
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Error with RNA_denovo by zmfowler » Thu, 2022-07-14 05:34 |
0 |
331 |
by zmfowler Thu, 2022-07-14 05:34 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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605 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,438 |
by shaunmk Mon, 2015-04-27 02:33 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
0 |
522 |
by sam_dc Sat, 2021-10-09 05:38 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
0 |
624 |
by brspurri Fri, 2020-08-28 09:11 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
0 |
1,345 |
by Marius1987 Sun, 2016-04-10 12:09 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
0 |
755 |
by Corvin Thu, 2020-04-02 00:16 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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763 |
by engand93 Wed, 2019-03-27 02:43 |
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Molecular Replacement with multiple chains by brspurri » Fri, 2011-06-10 08:25 |
0 |
1,957 |
by brspurri Mon, 2014-04-21 06:47 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
1,133 |
by G Mustafa Wed, 2018-10-17 05:41 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
698 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
547 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Docking HeparinSulfate to proteins using GlycanDock by GebauerJ » Tue, 2022-08-16 07:44 |
0 |
300 |
by GebauerJ Tue, 2022-08-16 07:44 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,496 |
by Sandy Tue, 2016-05-31 18:48 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
750 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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402 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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DNA Interface design by zadie1118 » Wed, 2011-06-22 07:05 |
0 |
1,958 |
by zadie1118 Mon, 2014-04-21 06:47 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
0 |
782 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
0 |
700 |
by Corvin Wed, 2020-12-30 09:21 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
557 |
by memilton Thu, 2021-12-16 09:09 |
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