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Rosetta 3 - Applications
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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1,780 |
by rmoretti Mon, 2014-05-26 09:29 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,023 |
by rmoretti Mon, 2019-06-24 14:39 |
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density scoring by Tianyang89 » Sat, 2020-08-29 04:54 |
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912 |
by danpf Sun, 2020-08-30 22:23 |
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Is it possible to restart the ddg_monomer.linuxgccrelease? by lanselibai » Mon, 2015-09-07 03:46 |
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1,622 |
by rmoretti Wed, 2015-09-09 12:01 |
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Rosetta failed in making score.fsc by josdee » Sun, 2017-02-05 21:58 |
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1,391 |
by smlewis Mon, 2017-02-06 06:57 |
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different value of score from rna_denovo and rna_score? by yikanzhang » Wed, 2021-02-03 07:17 |
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522 |
by CameronJA Tue, 2021-06-15 20:02 |
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Alanine Scanning by gjbartlett » Mon, 2013-08-05 07:02 |
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3,036 |
by rmoretti Mon, 2014-04-21 06:48 |
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Enzyme Design with additional covalent backbone bonds by mwfranklin » Wed, 2016-08-03 10:23 |
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1,930 |
by rmoretti Mon, 2016-09-05 11:29 |
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Getting error with Rosetta "antibody.linuxgccrelease" command by Sunyp_IM » Mon, 2017-08-07 19:40 |
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1,951 |
by smlewis Tue, 2017-08-15 23:19 |
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can anyone help me correct this script to do alanine scanning by xinmiaohe » Mon, 2019-08-26 17:23 |
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1,087 |
by xinmiaohe Mon, 2019-08-26 18:16 |
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ERROR: unrecognized residue name 'GLY_p:RepulsiveOnly' by smiruthi » Mon, 2011-12-12 14:27 |
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2,341 |
by rmoretti Mon, 2014-04-21 06:47 |
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Files for Spatial Constraints by Derek » Tue, 2016-04-12 01:00 |
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1,476 |
by Derek Wed, 2016-04-27 01:31 |
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Partial Active Site Design for a Novel Substrate by Derek » Wed, 2017-05-17 19:41 |
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1,276 |
by rmoretti Thu, 2017-05-18 13:51 |
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Calbur vs Energy Based Clustering by Swillard » Sun, 2018-07-01 13:24 |
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1,385 |
by rmoretti Fri, 2018-08-03 08:26 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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987 |
by bjharris Wed, 2020-07-01 23:25 |
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Enzyme design output silent file and score file by deltag » Fri, 2012-09-28 13:07 |
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1,970 |
by rmoretti Mon, 2014-04-21 06:47 |
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number of structures in homology modeling for cluster analysis by pdbb » Fri, 2013-04-12 08:52 |
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2,220 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,795 |
by rmoretti Fri, 2015-10-02 12:30 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
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747 |
by brspurri Wed, 2021-01-20 08:11 |
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Flexible docking using rosetta density-fitting for DNA by helm » Thu, 2012-06-14 23:43 |
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2,276 |
by smlewis Mon, 2014-04-21 06:47 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,011 |
by rmoretti Wed, 2018-11-21 15:10 |
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polymer docking using rosetta scripts by syntekabio2019 » Fri, 2020-11-27 01:51 |
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632 |
by rmoretti Fri, 2020-11-27 10:47 |
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FloppyTail options error by DmitriiN » Fri, 2016-11-11 02:54 |
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1,388 |
by smlewis Fri, 2016-11-11 08:33 |
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LoopModeler mover unable to determine cut point by gszwabowski » Mon, 2020-06-01 13:12 |
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941 |
by matteoferla Thu, 2020-07-02 07:27 |
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docking with constraints by talavera » Tue, 2013-05-07 01:50 |
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3,558 |
by rmoretti Mon, 2014-04-21 06:47 |
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ArchiveManager -- spinning down by Marius1987 » Fri, 2016-12-23 03:10 |
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1,365 |
by smlewis Fri, 2016-12-23 07:04 |
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Abinitio error: std::out_of_range: basic_string by Harley Worthy » Tue, 2017-10-31 15:20 |
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1,634 |
by Harley Worthy Thu, 2017-11-02 08:53 |
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how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot? by Danielsebas » Tue, 2019-09-24 03:51 |
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985 |
by smlewis Tue, 2019-09-24 12:43 |
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problem when exact pdb from silent file by wenchangyu2008 » Mon, 2011-04-18 00:42 |
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2,670 |
by wenchangyu2008 Mon, 2014-04-21 06:47 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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984 |
by smlewis Fri, 2018-07-27 13:32 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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821 |
by matteoferla Mon, 2020-05-04 01:43 |
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Binding energy contribution broken down by residue by brspurri » Tue, 2013-07-23 12:47 |
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2,359 |
by rmoretti Mon, 2014-04-21 06:48 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,364 |
by rmoretti Fri, 2017-03-24 13:39 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,002 |
by rmoretti Wed, 2019-07-10 09:24 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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857 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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Protein-DNA Docking using RosettaScripts? by brspurri » Fri, 2013-06-07 09:06 |
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3,894 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
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488 |
by vmulligan Wed, 2021-04-28 12:59 |
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Ab-initio modeling on part of the protein by xiayanlawrence » Thu, 2013-12-19 07:45 |
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2,967 |
by rmoretti Mon, 2014-04-21 06:48 |
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latest version of rosetta unable to build models by pramod » Mon, 2014-11-03 11:31 |
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2,161 |
by rmoretti Tue, 2014-11-04 10:33 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
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1,216 |
by kamau Wed, 2017-12-13 14:31 |
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Adding 'virtual' residues for N- and C-terminal optimisation by Derek Smith » Thu, 2014-08-14 23:18 |
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1,838 |
by jadolfbr Fri, 2014-10-31 09:00 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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856 |
by everyday847 Fri, 2019-08-23 04:08 |
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VH-VL Orientation in antibody by sujigeorge1979 » Mon, 2019-06-17 01:23 |
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1,133 |
by jeliazkov Mon, 2019-06-17 06:03 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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4,852 |
by smlewis Mon, 2014-04-21 06:47 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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967 |
by rmoretti Fri, 2019-03-29 09:45 |
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Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0. by daniloboskovic » Fri, 2019-11-08 08:24 |
1 |
1,547 |
by Payne Tue, 2022-06-21 07:25 |
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Holes output interpretation by lah435 » Mon, 2012-06-04 15:02 |
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2,016 |
by smlewis Mon, 2014-04-21 06:47 |
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Loopmodel with DNA has no energy score by Nicky_Learning_... » Sun, 2015-05-10 19:31 |
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1,801 |
by rmoretti Mon, 2015-05-25 12:30 |
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extract docking pose from ligand docking silent file by Ruska322 » Sat, 2019-09-07 05:21 |
0 |
677 |
by Ruska322 Sat, 2019-09-07 05:21 |
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How to apply cartesian_ddg to multi-metric enzyme? by Wang Zhe » Wed, 2021-12-08 10:07 |
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200 |
by Wang Zhe Wed, 2021-12-08 10:07 |
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How many iterations of remodel is enough? by daniloboskovic » Thu, 2020-07-16 08:07 |
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473 |
by daniloboskovic Thu, 2020-07-16 08:14 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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894 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Dock two domains using topology broker by sn » Thu, 2017-10-05 17:07 |
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786 |
by sn Thu, 2017-10-05 17:07 |
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"Residue 7 was disulfide bonded but had no partner" with antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-06-04 05:53 |
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497 |
by Sunyp_IM Thu, 2020-06-04 05:54 |
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Protein design: Ligand binding between two units of a homodimer by chemotaxis_123 » Sun, 2022-01-02 16:01 |
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198 |
by chemotaxis_123 Sun, 2022-01-02 16:01 |
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PDB Clustering by code_Monkey » Mon, 2021-04-05 10:40 |
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382 |
by code_Monkey Mon, 2021-04-05 10:40 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
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868 |
by evo_umich Mon, 2018-04-02 12:13 |
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RNP structure prediction flags by daniloboskovic » Fri, 2019-08-16 11:10 |
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648 |
by daniloboskovic Fri, 2019-08-16 11:17 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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885 |
by benhardy Wed, 2020-09-30 08:42 |
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Topobuilder segmentation fault by tatsiana.bylund » Mon, 2021-08-09 07:10 |
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505 |
by tatsiana.bylund Mon, 2021-08-09 07:10 |
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RosettaAntibody3 - How can I model an extended H3? by brspurri » Fri, 2020-08-28 09:11 |
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500 |
by brspurri Fri, 2020-08-28 09:11 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
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481 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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Pepspec options by shaunmk » Mon, 2015-04-27 02:33 |
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1,325 |
by shaunmk Mon, 2015-04-27 02:33 |
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Linker Building in scFv by sam_dc » Sat, 2021-10-09 05:38 |
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253 |
by sam_dc Sat, 2021-10-09 05:38 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,219 |
by Marius1987 Sun, 2016-04-10 12:09 |
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What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001." by Corvin » Thu, 2020-04-02 00:16 |
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637 |
by Corvin Thu, 2020-04-02 00:16 |
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help surface_docking peptide on ice by engand93 » Wed, 2019-03-27 02:43 |
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640 |
by engand93 Wed, 2019-03-27 02:43 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
0 |
967 |
by G Mustafa Wed, 2018-10-17 05:41 |
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ligand_docking: ligand preparation by Alison_Yajie » Thu, 2020-05-21 09:42 |
0 |
523 |
by Alison_Yajie Thu, 2020-05-21 09:42 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
0 |
272 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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Problems with mpi version of antibody.linuxgccrelease by Sunyp_IM » Thu, 2020-05-28 23:06 |
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627 |
by Sunyp_IM Thu, 2020-05-28 23:07 |
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Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)? by Corvin » Wed, 2020-12-16 04:58 |
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509 |
by Corvin Wed, 2020-12-30 09:21 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
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231 |
by memilton Thu, 2021-12-16 09:09 |
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fragment_picker bug by David Hoover » Wed, 2012-02-29 11:43 |
0 |
1,474 |
by David Hoover Mon, 2014-04-21 06:47 |
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Helical Symmetry Axis by Sandy » Tue, 2016-05-31 18:48 |
0 |
1,361 |
by Sandy Tue, 2016-05-31 18:48 |
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RosettaAntibody3 core.pose.util error by linhhoang157 » Tue, 2020-07-28 12:40 |
0 |
604 |
by linhhoang157 Tue, 2020-07-28 12:40 |
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IL-2 gets better binding with beta / gamma by tonycheng1688 » Wed, 2022-05-25 10:23 |
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69 |
by tonycheng1688 Wed, 2022-05-25 10:23 |
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Design of multimeric protein by ldlamini » Mon, 2021-01-11 07:23 |
0 |
404 |
by ldlamini Mon, 2021-01-11 07:23 |
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ligand dock into HEM containg pdb by syntekabio2019 » Thu, 2022-01-20 03:05 |
0 |
245 |
by syntekabio2019 Thu, 2022-01-20 03:05 |
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new BUNS for FunFolDes run by tatsiana.bylund » Wed, 2019-08-14 20:57 |
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648 |
by tatsiana.bylund Wed, 2019-08-14 20:57 |
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FlexPepDock ab initio: behavior without fragment files by nrollins » Mon, 2021-07-26 14:16 |
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269 |
by nrollins Mon, 2021-07-26 14:16 |
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Using GlycanDock and the Antibody Affinity Maturation protocol. by tbelec » Mon, 2022-02-28 12:37 |
0 |
204 |
by tbelec Mon, 2022-02-28 12:37 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
0 |
1,186 |
by msk Tue, 2014-06-03 11:09 |
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Extracting top score PIPER models by almeida85 » Mon, 2020-08-31 07:17 |
0 |
571 |
by almeida85 Mon, 2020-08-31 07:17 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
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888 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
0 |
777 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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zero standard deviation of I_sc in protein-protein docking by rohi » Fri, 2020-07-03 22:19 |
0 |
451 |
by rohi Fri, 2020-07-03 22:20 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
0 |
358 |
by almeida85 Thu, 2021-02-11 02:56 |
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snugdock run error: Sequence for partner1 does not match first member of ensemble1 by pagumaaaaa » Fri, 2022-03-25 01:21 |
0 |
103 |
by pagumaaaaa Fri, 2022-03-25 01:21 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
0 |
454 |
by Kazu Wed, 2020-05-20 08:49 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
0 |
669 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
0 |
694 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
0 |
1,090 |
by felipet Wed, 2014-07-02 10:23 |
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Error Implementing Match Style Constraints by pwging13 » Thu, 2019-12-19 09:53 |
0 |
626 |
by pwging13 Thu, 2019-12-19 09:53 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
0 |
1,478 |
by petrikigor Mon, 2014-04-21 06:47 |
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Weighted scores?? by sizhang » Wed, 2018-12-05 15:22 |
0 |
669 |
by sizhang Wed, 2018-12-05 15:22 |
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flexpepdcok of lipid conjugated peptide with glyco protein. by ravi.thakkkar369 » Fri, 2020-12-18 13:00 |
0 |
395 |
by ravi.thakkkar369 Fri, 2020-12-18 13:00 |
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membrane ab-initio modeling, is the quality comparable to comparative modeling of 20% id template? by fglaser » Thu, 2011-04-07 07:57 |
0 |
1,890 |
by fglaser Mon, 2014-04-21 06:47 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
0 |
809 |
by ksteczk Sat, 2020-04-11 11:23 |
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Pepspec Anchor Dock by Soler » Wed, 2020-09-16 19:08 |
0 |
422 |
by Soler Wed, 2020-09-16 19:08 |
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