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Rosetta 3 - Applications

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Normal topic Expected density
by GabrielDucrocq » Thu, 2022-07-14 06:38
1
599 by matteoferla
Wed, 2022-07-20 10:50
Normal topic Is it possible to restart the ddg_monomer.linuxgccrelease?
by lanselibai » Mon, 2015-09-07 03:46
1
1,868 by rmoretti
Wed, 2015-09-09 12:01
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
1,663 by smlewis
Mon, 2017-02-06 06:57
Normal topic different value of score from rna_denovo and rna_score?
by yikanzhang » Wed, 2021-02-03 07:17
1
835 by CameronJA
Tue, 2021-06-15 20:02
Normal topic Alanine Scanning
by gjbartlett » Mon, 2013-08-05 07:02
1
3,352 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Enzyme Design with additional covalent backbone bonds
by mwfranklin » Wed, 2016-08-03 10:23
1
2,232 by rmoretti
Mon, 2016-09-05 11:29
Normal topic Getting error with Rosetta "antibody.linuxgccrelease" command
by Sunyp_IM » Mon, 2017-08-07 19:40
1
2,294 by smlewis
Tue, 2017-08-15 23:19
Normal topic can anyone help me correct this script to do alanine scanning
by xinmiaohe » Mon, 2019-08-26 17:23
1
1,410 by xinmiaohe
Mon, 2019-08-26 18:16
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
2,037 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Membrane ab-initio modelling of a beta-strand
by hzhekova » Mon, 2019-06-10 14:22
1
1,283 by rmoretti
Mon, 2019-06-24 14:39
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
1,370 by danpf
Sun, 2020-08-30 22:23
Normal topic Files for Spatial Constraints
by Derek » Tue, 2016-04-12 01:00
1
1,723 by Derek
Wed, 2016-04-27 01:31
Normal topic Partial Active Site Design for a Novel Substrate
by Derek » Wed, 2017-05-17 19:41
1
1,530 by rmoretti
Thu, 2017-05-18 13:51
Normal topic Calbur vs Energy Based Clustering
by Swillard » Sun, 2018-07-01 13:24
1
1,620 by rmoretti
Fri, 2018-08-03 08:26
Normal topic kcenters_clustering_of_fragments
by bjharris » Mon, 2019-07-01 16:16
1
1,250 by bjharris
Wed, 2020-07-01 23:25
Normal topic problem when exact pdb from silent file
by wenchangyu2008 » Mon, 2011-04-18 00:42
1
2,938 by wenchangyu2008
Mon, 2014-04-21 06:47
Normal topic number of structures in homology modeling for cluster analysis
by pdbb » Fri, 2013-04-12 08:52
1
2,438 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
2,028 by rmoretti
Fri, 2015-10-02 12:30
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
1
1,025 by brspurri
Wed, 2021-01-20 08:11
Normal topic ProteinInterfaceMS
by rbjacob » Wed, 2018-10-24 11:31
1
1,265 by rmoretti
Wed, 2018-11-21 15:10
Normal topic polymer docking using rosetta scripts
by syntekabio2019 » Fri, 2020-11-27 01:51
1
927 by rmoretti
Fri, 2020-11-27 10:47
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,799 by rmoretti
Mon, 2014-04-21 06:47
Normal topic FloppyTail options error
by DmitriiN » Fri, 2016-11-11 02:54
1
1,637 by smlewis
Fri, 2016-11-11 08:33
Normal topic LoopModeler mover unable to determine cut point
by gszwabowski » Mon, 2020-06-01 13:12
1
1,242 by matteoferla
Thu, 2020-07-02 07:27
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
5,187 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB moves after relaxing
by Hr13b » Fri, 2018-07-27 13:12
1
1,226 by smlewis
Fri, 2018-07-27 13:32
Normal topic can remodel add loops in one chain in multichain PDB structure?
by ksteczk » Fri, 2020-05-01 06:26
1
1,152 by matteoferla
Mon, 2020-05-04 01:43
Normal topic Binding energy contribution broken down by residue
by brspurri » Tue, 2013-07-23 12:47
1
2,605 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Holes output interpretation
by lah435 » Mon, 2012-06-04 15:02
1
2,274 by smlewis
Mon, 2014-04-21 06:47
Normal topic score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059'
by sn » Fri, 2017-03-24 12:26
1
1,612 by rmoretti
Fri, 2017-03-24 13:39
Normal topic protein interction design
by Negarsardar » Wed, 2019-05-15 12:01
1
1,243 by rmoretti
Wed, 2019-07-10 09:24
Normal topic get an increased energy after energy minimization when using different score functions for repacking and energy minimization
by xinmiaohe » Fri, 2020-02-07 11:59
1
1,126 by xinmiaohe
Fri, 2020-02-07 13:52
Normal topic ArchiveManager -- spinning down
by Marius1987 » Fri, 2016-12-23 03:10
1
1,613 by smlewis
Fri, 2016-12-23 07:04
Normal topic Abinitio error: std::out_of_range: basic_string
by Harley Worthy » Tue, 2017-10-31 15:20
1
1,937 by Harley Worthy
Thu, 2017-11-02 08:53
Normal topic how to "rescore" the models using lowest energy model from rosetta run as native, for RMSD vs Score plot?
by Danielsebas » Tue, 2019-09-24 03:51
1
1,318 by smlewis
Tue, 2019-09-24 12:43
Normal topic Ab-initio modeling on part of the protein
by xiayanlawrence » Thu, 2013-12-19 07:45
1
3,220 by rmoretti
Mon, 2014-04-21 06:48
Normal topic latest version of rosetta unable to build models
by pramod » Mon, 2014-11-03 11:31
1
2,515 by rmoretti
Tue, 2014-11-04 10:33
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,473 by kamau
Wed, 2017-12-13 14:31
Normal topic Adding 'virtual' residues for N- and C-terminal optimisation
by Derek Smith » Thu, 2014-08-14 23:18
1
2,105 by jadolfbr
Fri, 2014-10-31 09:00
Normal topic Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo
by zharmad » Fri, 2019-08-23 01:16
1
1,126 by everyday847
Fri, 2019-08-23 04:08
Normal topic relax VS. backrub
by jiongzhang » Mon, 2012-07-02 14:52
1
2,359 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-DNA Docking using RosettaScripts?
by brspurri » Fri, 2013-06-07 09:06
1
4,176 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
779 by vmulligan
Wed, 2021-04-28 12:59
Normal topic VH-VL Orientation in antibody
by sujigeorge1979 » Mon, 2019-06-17 01:23
1
1,455 by jeliazkov
Mon, 2019-06-17 06:03
Normal topic placing a constraint during structure prediction
by cbala » Thu, 2011-04-07 08:54
1
2,991 by ic3reyes
Mon, 2014-04-21 06:47
Normal topic Surface accessible residue as a constraint.
by arthuc01 » Fri, 2012-03-09 23:27
1
2,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic hybrid approach - comparative and ab initio modelling
by eprates » Wed, 2019-03-20 11:58
1
1,231 by rmoretti
Fri, 2019-03-29 09:45
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
1
2,458 by Payne
Tue, 2022-06-21 07:25
Normal topic Loopmodel with DNA has no energy score
by Nicky_Learning_... » Sun, 2015-05-10 19:31
1
2,070 by rmoretti
Mon, 2015-05-25 12:30
Normal topic FloppyTail vs. Remodel for linkers
by attesor » Mon, 2014-07-07 08:36
1
2,072 by smlewis
Mon, 2014-07-07 11:58
Normal topic Error in Loop modeling and other queries
by ashu4487 » Wed, 2016-05-11 18:23
1
2,005 by rmoretti
Fri, 2016-06-17 10:15
Normal topic "Angle constraint: 0-length bonds" error
by purvi24 » Sun, 2019-07-28 10:09
1
1,308 by rmoretti
Mon, 2019-08-26 12:49
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,628 by smlewis
Mon, 2014-04-21 06:47
Normal topic Instructing design scripts to use noncanonical AA instead of canonical
by zcrook » Tue, 2014-11-25 10:43
1
1,886 by rmoretti
Wed, 2014-11-26 07:51
Normal topic Modeling the structure of camel single domain antibody
by Sunyp_IM » Mon, 2018-01-08 00:34
1
1,987 by Sunyp_IM
Mon, 2018-01-08 00:55
Normal topic Usage of the TaskOperations "RestrictToCDRsAndNeighbors"
by johnnytam100 » Wed, 2019-04-10 02:58
1
1,330 by rmoretti
Wed, 2019-07-10 10:10
Normal topic Remodel: the pose does not have residue with chain=H, PDBnum=114
by lanselibai » Wed, 2019-12-25 13:35
1
1,743 by lanselibai
Fri, 2019-12-27 09:38
Normal topic Should I be stripping water molecules from my input structure for Rosetta Design?
by chrisHKL » Wed, 2021-03-24 14:22
1
829 by smlewis
Wed, 2021-03-24 14:59
Normal topic Disulfidize- "Extra content at the end of the document"
by ldlamini » Tue, 2022-05-17 02:37
1
749 by rmoretti
Tue, 2022-05-17 07:29
Normal topic Loop modeling: KIC with fragments producing unusual models
by kamau » Mon, 2015-06-01 12:06
1
2,031 by rmoretti
Sat, 2015-06-20 20:07
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
1,965 by rmoretti
Fri, 2016-10-14 08:56
Normal topic Problem passing a list of PDB files to minimize_with_cst
by dolevrahat » Sun, 2018-11-18 16:13
1
1,550 by rmoretti
Wed, 2018-11-21 15:31
Normal topic FlexPepDock in RosettaScripts keeps running
by gw » Tue, 2012-08-21 12:31
1
2,421 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible peptide docking with flexible receptor backbone
by tevang » Fri, 2012-09-14 11:18
1
2,554 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ligand docking at specific orientation
by ShiranBZ » Mon, 2020-04-13 20:46
1
975 by matteoferla
Mon, 2020-05-04 02:02
Normal topic Old Knotfind algorithm
by Martin Floor » Thu, 2022-09-22 07:28
1
664 by rmoretti
Fri, 2022-09-23 09:38
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,711 by rmoretti
Mon, 2014-08-04 14:51
Normal topic score application
by Hongtham » Tue, 2014-12-23 06:38
1
1,795 by rmoretti
Fri, 2015-01-02 11:06
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,509 by benhardy
Wed, 2020-09-30 04:24
Normal topic missing atom number 5 atom name CB
by ajaniharesh » Fri, 2019-04-26 12:08
1
1,568 by rmoretti
Fri, 2019-04-26 12:13
Normal topic fixing sequence during grafting in antibody_designer
by COM » Fri, 2020-01-24 11:38
1
1,137 by jadolfbr
Tue, 2020-01-28 09:13
Normal topic molfile_to_params script error
by pablogalazdavison » Tue, 2015-07-07 21:22
1
2,236 by rmoretti
Tue, 2015-07-14 14:59
Normal topic Threading with Ligand
by ekwan » Thu, 2018-12-06 15:10
1
1,312 by rmoretti
Fri, 2019-03-29 13:21
Normal topic Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease
by bdzhh » Tue, 2019-09-17 17:02
1
1,215 by jadolfbr
Thu, 2019-09-19 08:53
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
806 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
1,148 by benhardy
Wed, 2020-09-30 08:42
Normal topic Topobuilder segmentation fault
by tatsiana.bylund » Mon, 2021-08-09 07:10
0
860 by tatsiana.bylund
Mon, 2021-08-09 07:10
Normal topic Help to understand docking results
by rtorquato » Fri, 2022-11-25 12:05
0
1,169 by rtorquato
Fri, 2022-11-25 12:05
Normal topic FlexPepDock Multi chain receptor
by evo_umich » Mon, 2018-04-02 12:13
0
1,052 by evo_umich
Mon, 2018-04-02 12:13
Normal topic Error with RNA_denovo
by zmfowler » Thu, 2022-07-14 05:34
0
477 by zmfowler
Thu, 2022-07-14 05:34
Normal topic fragment_picker bug
by David Hoover » Wed, 2012-02-29 11:43
0
1,636 by David Hoover
Mon, 2014-04-21 06:47
Normal topic Scoring after HBNet
by HHL_SIUC » Wed, 2020-07-01 10:49
0
651 by HHL_SIUC
Wed, 2020-07-01 10:49
Normal topic Pepspec options
by shaunmk » Mon, 2015-04-27 02:33
0
1,483 by shaunmk
Mon, 2015-04-27 02:33
Normal topic Linker Building in scFv
by sam_dc » Sat, 2021-10-09 05:38
0
587 by sam_dc
Sat, 2021-10-09 05:38
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
672 by brspurri
Fri, 2020-08-28 09:11
Normal topic Finding lowest energy structure among generated structures
by Marius1987 » Sun, 2016-04-10 11:38
0
1,396 by Marius1987
Sun, 2016-04-10 12:09
Normal topic What means "[ ERROR ] TIME_STAMP: AbrelaxMover: finished ...NO_BATCH S_0001."
by Corvin » Thu, 2020-04-02 00:16
0
810 by Corvin
Thu, 2020-04-02 00:16
Normal topic help surface_docking peptide on ice
by engand93 » Wed, 2019-03-27 02:43
0
816 by engand93
Wed, 2019-03-27 02:43
Normal topic pmut_scan_parallel
by G Mustafa » Wed, 2018-10-17 05:41
0
1,211 by G Mustafa
Wed, 2018-10-17 05:41
Normal topic ligand_docking: ligand preparation
by Alison_Yajie » Thu, 2020-05-21 09:42
0
754 by Alison_Yajie
Thu, 2020-05-21 09:42
Normal topic constraining different chains together in rosetta_cm
by y_atsmonraz » Thu, 2021-11-18 02:59
0
629 by y_atsmonraz
Thu, 2021-11-18 03:01
Normal topic Docking HeparinSulfate to proteins using GlycanDock
by GebauerJ » Tue, 2022-08-16 07:44
0
482 by GebauerJ
Tue, 2022-08-16 07:44
Normal topic Helical Symmetry Axis
by Sandy » Tue, 2016-05-31 18:48
0
1,555 by Sandy
Tue, 2016-05-31 18:48
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
812 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic IL-2 gets better binding with beta / gamma
by tonycheng1688 » Wed, 2022-05-25 10:23
0
564 by tonycheng1688
Wed, 2022-05-25 10:23
Normal topic Problems with mpi version of antibody.linuxgccrelease
by Sunyp_IM » Thu, 2020-05-28 23:06
0
868 by Sunyp_IM
Thu, 2020-05-28 23:07
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
769 by Corvin
Wed, 2020-12-30 09:21
Normal topic Segfault error while running MR Rosetta in Phenix
by memilton » Thu, 2021-12-16 09:09
0
723 by memilton
Thu, 2021-12-16 09:09
Normal topic new BUNS for FunFolDes run
by tatsiana.bylund » Wed, 2019-08-14 20:57
0
807 by tatsiana.bylund
Wed, 2019-08-14 20:57
Normal topic FlexPepDock ab initio: behavior without fragment files
by nrollins » Mon, 2021-07-26 14:16
0
486 by nrollins
Mon, 2021-07-26 14:16
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