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Rosetta 3 - Applications

Topic / Topic starter Replies Views Last postsort descending
Normal topic Segmentation Fault during prepacking
by Sunyp_IM » Fri, 2020-06-12 11:24
4
3,451 by Sunyp_IM
Thu, 2020-07-09 18:40
Normal topic Problem with mpirun/mpiexec
by ahansel » Fri, 2020-07-10 08:37
1
3,876 by rmoretti
Fri, 2020-07-10 09:59
Normal topic Warning: Fold tree is not set properly for density scoring
by ahansel » Mon, 2020-07-13 10:50
1
1,426 by danpf
Tue, 2020-07-14 10:27
Normal topic Translate mover chain X doesnot exist.
by surya » Thu, 2020-07-09 08:36
6
3,556 by rmoretti
Tue, 2020-07-14 10:54
Normal topic How many iterations of remodel is enough?
by daniloboskovic » Thu, 2020-07-16 08:07
0
884 by daniloboskovic
Thu, 2020-07-16 08:14
Normal topic Comparative modeling of metalloproteins
by ctqwong » Sun, 2020-07-12 13:51
3
2,206 by ctqwong
Mon, 2020-07-27 01:48
Normal topic clean_pdb not working
by Andre Serobian » Thu, 2020-07-23 04:48
3
2,680 by rmoretti
Tue, 2020-07-28 08:24
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
1,046 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic Zero residues error in docking
by cjy318 » Tue, 2020-07-28 19:47
0
1,182 by cjy318
Tue, 2020-07-28 19:47
Normal topic pepspec anchor dock
by Andre Serobian » Tue, 2020-07-28 05:51
1
1,290 by Andre Serobian
Tue, 2020-07-28 23:26
Normal topic Bug Report - Encoding issue
by daniloboskovic » Tue, 2020-08-04 07:02
0
809 by daniloboskovic
Tue, 2020-08-04 07:02
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
1,882 by matteoferla
Tue, 2020-08-04 09:30
Normal topic how to know the precedure of solving a actural bio problem? like interface design?
by qq7678500549 » Thu, 2020-08-06 18:45
2
1,650 by qq7678500549
Sun, 2020-08-09 18:59
Normal topic Error when trying docking protocol with different ligand
by scyphs » Wed, 2020-08-05 04:37
2
1,675 by scyphs
Mon, 2020-08-10 08:09
Normal topic Docking-RMS value nan
by jlawrie » Wed, 2020-08-12 07:03
2
1,978 by jlawrie
Wed, 2020-08-12 07:27
Normal topic Modeling-Using RosettaCM
by jlawrie » Wed, 2020-08-12 08:46
1
1,174 by jlawrie
Wed, 2020-08-12 08:47
Normal topic Homology Modeling-no PDB output
by jlawrie » Wed, 2020-08-12 06:30
2
1,956 by jlawrie
Wed, 2020-08-12 08:56
Normal topic Docking-I_sc values do not correlate
by jlawrie » Wed, 2020-08-12 08:08
2
1,860 by jlawrie
Wed, 2020-08-12 08:57
Normal topic mpirun docking_protocol
by NanB » Mon, 2020-08-03 11:38
1
2,981 by ssrb
Fri, 2020-08-14 09:18
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
1,576 by jlawrie
Fri, 2020-08-14 14:09
Normal topic clustering output file has few structures
by fabiotrovato » Mon, 2020-08-17 11:37
0
820 by fabiotrovato
Mon, 2020-08-17 11:37
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
2,922 by brspurri
Tue, 2020-08-18 09:57
Normal topic Fewer than expected structures in clustering output
by fabiotrovato » Thu, 2020-08-20 00:59
0
872 by fabiotrovato
Thu, 2020-08-20 00:59
Normal topic Successful RosettaCM?
by jlawrie » Wed, 2020-08-19 06:53
2
1,887 by jlawrie
Thu, 2020-08-20 11:00
Normal topic Global Docking with carbohydrates
by ChiauShu » Sat, 2020-08-22 20:16
0
1,009 by ChiauShu
Sat, 2020-08-22 20:16
Normal topic Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB
by rlwoltz » Thu, 2019-01-24 19:43
3
4,467 by bjharris
Sun, 2020-08-23 14:03
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
908 by brspurri
Fri, 2020-08-28 09:11
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
1,955 by danpf
Sun, 2020-08-30 22:23
Normal topic Extracting top score PIPER models
by almeida85 » Mon, 2020-08-31 07:17
0
1,074 by almeida85
Mon, 2020-08-31 07:17
Normal topic make_fragments.pl error
by almeida85 » Mon, 2020-08-31 04:39
2
2,095 by almeida85
Tue, 2020-09-01 01:29
Normal topic Scoring docking error
by almeida85 » Wed, 2020-09-02 01:32
2
1,767 by almeida85
Wed, 2020-09-02 06:14
Normal topic 'standard.wts' does not exist
by almeida85 » Mon, 2020-09-14 02:26
1
1,409 by rmoretti
Mon, 2020-09-14 06:36
Normal topic FlexPepDocking
by jlawrie » Tue, 2020-09-15 12:52
0
971 by jlawrie
Tue, 2020-09-15 12:52
Normal topic Pepspec Anchor Dock
by Soler » Wed, 2020-09-16 19:08
0
887 by Soler
Wed, 2020-09-16 19:08
Normal topic FASTA for Octopus
by Smbat » Wed, 2020-09-16 05:40
1
1,583 by rmoretti
Wed, 2020-09-16 22:11
Normal topic Pepspec Anchor Dock
by Soler » Fri, 2020-09-18 08:09
0
1,081 by Soler
Fri, 2020-09-18 08:09
Normal topic Building loop extensions in a membrane protein with Remodel
by benhardy » Tue, 2020-06-02 08:21
2
2,285 by benhardy
Sun, 2020-09-20 11:15
Normal topic When using "screening job files" in small molecule-docking I get: Residue type already exists in the cache Error
by Martin Floor » Thu, 2020-09-17 06:01
4
2,960 by Martin Floor
Tue, 2020-09-22 00:48
Normal topic I need some help for using pHDock applications(histidine protonation / pH-dependent binding)
by leygkn » Tue, 2020-09-22 18:40
1
1,387 by leygkn
Tue, 2020-09-22 22:46
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
5,811 by fede
Wed, 2020-09-23 11:24
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
2,281 by danpf
Thu, 2020-09-24 13:44
Normal topic Trouble running MPI docking protocol, please help!
by Rob_Barringer » Tue, 2020-08-18 06:40
2
3,079 by Rob_Barringer
Fri, 2020-09-25 05:45
Normal topic NCAA Rotamers for Cyclosporin
by marinok » Mon, 2020-09-28 14:11
0
1,274 by marinok
Mon, 2020-09-28 14:11
Normal topic Input structure
by Soler » Mon, 2020-09-28 13:18
1
1,191 by ssrb
Tue, 2020-09-29 12:37
Normal topic Membrane Abinitio modeling
by bharat_46010 » Mon, 2017-03-13 22:39
1
1,821 by benhardy
Wed, 2020-09-30 04:24
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
1,413 by benhardy
Wed, 2020-09-30 08:42
Normal topic minimize_with_cst and convert_to_cst_file for ddG_monomer issues/confusion
by Kharlamov1317a » Mon, 2020-09-21 08:46
1
2,068 by Kharlamov1317a
Wed, 2020-10-07 08:26
Normal topic Modelling of multi-component symmetrical structures
by LanMei » Wed, 2020-10-07 09:58
0
1,070 by LanMei
Wed, 2020-10-07 09:58
Normal topic neutral N-term and C-term
by nawsad » Sun, 2013-06-09 10:20
7
9,337 by helenah
Thu, 2020-10-08 05:29
Normal topic Scoring functions: talaris2013 incompatible versions
by Smbat » Tue, 2020-10-13 06:18
5
3,342 by Astghik
Thu, 2020-10-15 00:48
Normal topic not knowing which one of three ways to run rosettascript
by xinmiaohe » Tue, 2020-10-13 13:52
2
2,233 by xinmiaohe
Mon, 2020-10-19 13:18
Normal topic antibody.mpi.linuxgccrelease some antibodies failing to model
by drewaight » Mon, 2020-11-02 17:07
0
1,277 by drewaight
Mon, 2020-11-02 17:07
Normal topic Speed problem when running RosettaLigand ligand docking
by Nicole Deng » Tue, 2019-10-08 04:29
2
2,334 by Nicole Deng
Tue, 2020-11-03 19:07
Normal topic How to add additional rounds of design and optimization in Rosetta scripts?
by Nicole Deng » Tue, 2020-11-03 19:05
2
1,635 by Nicole Deng
Thu, 2020-11-05 03:04
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
0
1,427 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic Using Rmsd RosettaScripts filter with alignment files
by bjharris » Sun, 2020-11-08 15:51
1
1,255 by rmoretti
Sun, 2020-11-08 18:56
Normal topic Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading
by Corvin » Tue, 2020-06-30 00:36
12
9,367 by Corvin
Tue, 2020-11-10 01:22
Normal topic Membrane Abinitio modeling error
by jkyan007 » Thu, 2020-10-29 03:30
1
1,248 by noahC_noahDo
Tue, 2020-11-17 10:35
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
1
1,563 by neelamraju.srid...
Wed, 2020-11-18 05:47
Normal topic How to use MHC Epitope energy (mhc_epitope) to deimmunize a protein structure?
by Sunyp_IM » Sun, 2020-11-08 08:07
5
3,323 by Brahm Yachnin
Wed, 2020-11-18 17:21
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
3,700 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic Prevention of the negatively charged Nitrogen protonation by coupled_moves
by Corvin » Wed, 2020-11-18 02:56
4
2,770 by Corvin
Wed, 2020-11-25 02:58
Normal topic polymer docking using rosetta scripts
by syntekabio2019 » Fri, 2020-11-27 01:51
1
1,295 by rmoretti
Fri, 2020-11-27 10:47
Normal topic Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms
by Corvin » Wed, 2020-12-02 04:00
1
1,322 by rmoretti
Wed, 2020-12-02 07:27
Normal topic Error: in membrane docking : Cannot split pose by membrane jump! Quitting...
by Astghik » Tue, 2020-11-24 05:27
2
1,737 by Astghik
Thu, 2020-12-03 02:35
Normal topic Can I believe the antibody design result?
by Sunyp_IM » Mon, 2020-11-30 03:29
6
3,454 by jadolfbr
Sun, 2020-12-06 17:41
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
2,029 by everyday847
Wed, 2020-12-09 21:46
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
1,944 by zdaw
Tue, 2020-12-15 15:38
Normal topic Error when using Remodel on a protein with a chemically bound ligand
by Pappmaschee » Wed, 2020-12-16 09:23
0
1,200 by Pappmaschee
Wed, 2020-12-16 09:23
Normal topic pepspec anchor dock
by Astghik » Tue, 2020-10-20 05:31
6
3,745 by Pappmaschee
Thu, 2020-12-17 02:24
Normal topic where is generate_ligens.linuxgccrelease?
by Nicole Deng » Thu, 2020-12-03 00:00
2
1,887 by Nicole Deng
Fri, 2020-12-18 00:28
Normal topic flexpepdcok of lipid conjugated peptide with glyco protein.
by ravi.thakkkar369 » Fri, 2020-12-18 13:00
0
826 by ravi.thakkkar369
Fri, 2020-12-18 13:00
Normal topic protein-ligand docking rescoring with interfaceAnalyzer
by syntekabio2019 » Sat, 2020-12-19 03:59
2
1,544 by syntekabio2019
Sun, 2020-12-20 21:10
Normal topic RemodelMover and Input Pose
by ozyo » Tue, 2020-12-29 09:41
0
948 by ozyo
Tue, 2020-12-29 09:41
Normal topic Protonating all possible sites: the problem in MOL2 file format or the innate Rosetta feature(bug)?
by Corvin » Wed, 2020-12-16 04:58
0
1,123 by Corvin
Wed, 2020-12-30 09:21
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
0
955 by ldlamini
Mon, 2021-01-11 07:23
Normal topic constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover)
by rohi » Mon, 2021-01-11 13:32
0
1,060 by rohi
Mon, 2021-01-11 13:58
Normal topic Writing down properties for new atom types
by Corvin » Tue, 2021-01-12 04:30
0
787 by Corvin
Wed, 2021-01-13 04:00
Normal topic relax.linuxgccrelease in multiple processors
by jpfuenzalidawx » Thu, 2021-01-14 14:07
5
3,194 by jadolfbr
Fri, 2021-01-15 08:06
Normal topic A problem with "molfile_to_params.py"
by Rosettasz » Mon, 2013-08-19 19:35
10
11,570 by egecav
Mon, 2021-01-18 05:41
Normal topic [Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence
by brspurri » Mon, 2021-01-04 16:46
1
1,425 by brspurri
Mon, 2021-01-18 18:14
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
1,009 by agctomer
Tue, 2021-01-19 22:45
Normal topic manually defining CDRs in antibody modelling
by gard.nelson » Fri, 2020-07-10 13:31
1
1,346 by brspurri
Wed, 2021-01-20 08:11
Normal topic [Solved] Resetting a pose with RigidBodyTransMover
by bjharris » Wed, 2021-01-13 14:01
1
1,290 by bjharris
Fri, 2021-01-22 17:34
Normal topic Question with rosetta AbPredict tutorial
by terabithia2011 » Mon, 2021-01-25 09:24
0
878 by terabithia2011
Mon, 2021-01-25 09:24
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
913 by Poladu
Tue, 2021-01-26 07:50
Normal topic Modelling humanized camelid like antibody
by terabithia2011 » Tue, 2021-01-26 10:12
0
937 by terabithia2011
Tue, 2021-01-26 10:12
Normal topic antibody.linuxgccrelease- output models don't have the same sequence as the input fasta
by agctomer » Thu, 2021-01-21 15:35
4
2,449 by agctomer
Sun, 2021-01-31 01:06
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
2,273 by nannemdp
Wed, 2021-02-03 08:52
Normal topic hbond_sr_bb and hbond_lr_bb for different chains
by tylerborrman » Tue, 2020-10-13 13:41
2
1,961 by tylerborrman
Tue, 2021-02-09 16:33
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
1,017 by aralz
Thu, 2021-02-11 00:46
Normal topic Segfault with Pepspec
by almeida85 » Thu, 2021-02-11 02:56
0
761 by almeida85
Thu, 2021-02-11 02:56
Normal topic Number of max allowed mutations from WT sequence
by mouung » Fri, 2020-09-04 02:33
2
1,946 by amorin
Fri, 2021-02-12 08:53
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
7,210 by amorin
Sat, 2021-02-27 20:29
Normal topic antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages
by AlfredoKCL » Sun, 2021-02-28 16:42
2
1,566 by AlfredoKCL
Mon, 2021-03-01 04:07
Normal topic How to write down a connection between ligand's atom and metal ion from enzyme?
by Corvin » Mon, 2021-02-15 06:54
7
3,817 by aloshbau
Mon, 2021-03-01 20:06
Normal topic BuildPeptide - Using Phosphorylated and Sulfated Tyrosine
by jlawrie » Thu, 2020-09-03 14:29
1
1,481 by cryosky
Mon, 2021-03-01 21:37
Normal topic Error from clean_pdb.py
by code_Monkey » Mon, 2021-03-01 17:00
2
1,514 by code_Monkey
Thu, 2021-03-04 12:14
Normal topic Comparative Modeling Tutorial
by code_Monkey » Thu, 2021-03-04 12:35
1
1,118 by rmoretti
Fri, 2021-03-05 09:35
Normal topic Ab Initio folding with HEM ligand molecule
by jseco » Fri, 2021-03-05 06:49
0
831 by jseco
Mon, 2021-03-08 03:40
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