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Rosetta 3 - Applications

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Normal topic Repeatability of DDG calculation
by jennifer » Wed, 2015-04-08 05:29
0
1,673 by jennifer
Wed, 2015-04-08 05:29
Normal topic ReplicaDock 2.0 Native vs Input Structure Flags Confusion
by katherinemccoy » Tue, 2022-12-27 06:42
2
4,949 by katherinemccoy
Tue, 2023-02-28 18:19
Normal topic ReplicaDock2.0 demo fails with MPIFileBufJobDistributor: (1) [ ERROR ]
by erpannec » Tue, 2022-08-09 05:42
4
2,125 by erpannec
Thu, 2022-09-15 05:17
Normal topic reporting bugs? (erraser in rosetta 3.10)
by meyer » Fri, 2018-12-14 09:40
2
2,119 by everyday847
Fri, 2019-03-29 13:13
Normal topic Representing Cross-linked nitrogens
by jjlee2 » Sat, 2011-11-26 18:42
1
2,553 by smlewis
Mon, 2014-04-21 06:47
Normal topic Reproduce Robetta's ddg values of interface alanine scan using Rosetta?
by cossio » Mon, 2015-01-19 07:14
0
2,795 by cossio
Mon, 2015-01-19 07:14
Normal topic Reproducing the exact result using information from previos run
by nawsad » Thu, 2013-03-14 12:05
2
2,728 by nawsad
Mon, 2014-04-21 06:47
Normal topic Resfile as a input for InterfaceAnalyzer
by palak8669 » Sun, 2015-06-07 21:46
1
2,125 by smlewis
Mon, 2015-06-08 06:35
Normal topic Residue selector
by Alison_Yajie » Wed, 2020-06-17 19:57
0
914 by Alison_Yajie
Thu, 2020-06-18 09:47
Normal topic residues_patch_selectors CENTROID_HA
by Pernille » Fri, 2014-10-03 03:53
2
3,130 by Pernille
Wed, 2014-10-08 10:41
Normal topic residue_energy_breakdown of a protein-ligand complex.
by sam_dc » Tue, 2021-05-18 04:45
1
1,396 by rmoretti
Tue, 2021-05-18 07:21
Normal topic Residue_energy_breakdown utility
by cn » Sat, 2012-03-17 06:11
3
3,772 by cn
Mon, 2014-04-21 06:47
Normal topic restrain residues in docking
by albumns » Sat, 2013-11-02 08:52
1
2,701 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
6,764 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic revert_design_to_native app comparison to FavorNativeResidue mover
by nwhoppe » Wed, 2016-06-29 14:35
3
4,307 by rmoretti
Tue, 2016-07-12 09:30
Normal topic RIFdocking:Unable to locate database file chemical/residue_type_sets/fa_standard/residue_types/
by sia » Tue, 2022-08-02 20:06
2
1,996 by SeongRyeong Go
Mon, 2022-08-15 18:31
Normal topic RMS determination using Rosetta 3.3
by adraney » Thu, 2011-12-08 12:44
2
3,439 by mark.wilson
Mon, 2014-04-21 06:47
Normal topic RMSD calculation
by hamedkhakzad » Tue, 2016-09-13 04:56
2
4,301 by rmoretti
Wed, 2016-09-14 02:05
Normal topic Rna Denovo
by helderveras » Wed, 2020-05-06 08:40
5
3,236 by everyday847
Wed, 2020-05-20 08:52
Normal topic RNA modeling with step wise Monte Carlo error
by szcshr123 » Mon, 2020-12-07 18:08
3
2,025 by everyday847
Wed, 2020-12-09 21:46
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
6,025 by rmoretti
Mon, 2014-02-24 09:12
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
6,067 by mkoohim
Mon, 2014-04-21 06:47
Normal topic RNP structure prediction flags
by daniloboskovic » Fri, 2019-08-16 11:10
0
1,014 by daniloboskovic
Fri, 2019-08-16 11:17
Normal topic Robetta ab initio - TrRosetta for membrane proteins
by benhardy » Wed, 2020-09-30 08:42
0
1,410 by benhardy
Wed, 2020-09-30 08:42
Normal topic rosetta 3.3 - antibody
by ron amon » Mon, 2014-07-21 00:44
1
2,555 by rmoretti
Mon, 2014-07-21 10:51
Normal topic Rosetta 3.4 "Relax pdb with allatom constraints" does not work with structures containing multiple chains
by ahonegger » Tue, 2012-04-24 01:34
3
4,291 by ahonegger
Mon, 2014-04-21 06:47
Normal topic Rosetta ab initio run gives 0.00 RMSD for generated 2000 models? (run still in progress)
by Danielsebas » Mon, 2019-09-23 03:24
5
3,387 by smlewis
Mon, 2019-09-23 11:42
Normal topic Rosetta Antibody Design: Error with foldtree: problem with the fold_tree:biggest_label != num_jump 2 1
by cm21 » Wed, 2020-05-20 08:55
2
1,893 by cm21
Wed, 2020-05-20 11:22
Normal topic Rosetta antibody- modeling in the presense of an antigen
by agctomer » Mon, 2021-02-01 03:19
4
2,268 by nannemdp
Wed, 2021-02-03 08:52
Normal topic rosetta app
by MA » Wed, 2017-07-05 06:52
5
4,257 by smlewis
Tue, 2017-07-11 07:53
Normal topic rosetta backrub
by ladimafakher » Thu, 2018-10-04 08:01
4
3,614 by ladimafakher
Thu, 2018-11-01 03:47
Normal topic Rosetta DARc suboptimal dockings
by ddhoyo » Mon, 2021-10-11 06:18
0
771 by ddhoyo
Mon, 2021-10-11 06:18
Normal topic Rosetta Design: Non-canonical amino acid substrate not accepted
by Friedrich Ehinger » Fri, 2023-08-04 00:09
2
736 by Friedrich Ehinger
Fri, 2023-08-04 08:38
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
4,656 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
7,200 by rmoretti
Mon, 2015-10-12 15:10
Normal topic Rosetta failed in making score.fsc
by josdee » Sun, 2017-02-05 21:58
1
2,028 by smlewis
Mon, 2017-02-06 06:57
Normal topic Rosetta fragment tools installation error
by Danielsebas » Thu, 2019-08-29 02:17
2
2,132 by Danielsebas
Sun, 2019-09-01 02:38
Normal topic Rosetta Holes
by zsun12 » Wed, 2015-09-30 11:40
1
4,235 by rmoretti
Mon, 2015-10-12 15:20
Normal topic Rosetta Ligand Ensemble
by malfonsoprieto » Wed, 2021-05-26 10:21
3
2,117 by vizcarra
Thu, 2021-08-26 10:16
Normal topic Rosetta make_fragments.pl error?
by Danielsebas » Mon, 2019-09-02 07:51
3
2,544 by Danielsebas
Thu, 2019-09-05 03:35
Normal topic Rosetta Matcher not recognizing protonation forms of CST files like CYZ, HIS_D, etc
by Hirbond » Tue, 2022-03-01 13:16
0
1,156 by Hirbond
Tue, 2022-03-01 13:16
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
7,300 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
5,689 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic Rosetta Remodel - Error in core::conformation::Conformation::residue(): The sequence position requested was 0.
by daniloboskovic » Fri, 2019-11-08 08:24
1
3,430 by Payne
Tue, 2022-06-21 07:25
Normal topic Rosetta remodel - including an RNA ligand
by daniloboskovic » Fri, 2020-04-10 04:24
0
1,027 by daniloboskovic
Fri, 2020-04-10 04:24
Normal topic rosetta remodel and designing helix extension
by dhirajks » Thu, 2018-12-13 19:34
0
1,280 by dhirajks
Thu, 2018-12-13 19:34
Normal topic Rosetta residue design for DNA binding
by deltag » Wed, 2012-12-12 11:35
5
9,335 by deltag
Mon, 2014-04-21 06:47
Normal topic Rosetta RNA denovo huge memory usage (probable memory leak)
by cdegut » Mon, 2017-10-30 16:41
5
4,488 by cdegut
Fri, 2017-11-03 05:50
Normal topic rosetta scores for mutated structures
by harshkhare » Wed, 2011-11-23 09:30
1
2,927 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta scoring
by Dimitrov » Thu, 2012-09-20 01:54
7
10,208 by attesor
Mon, 2014-04-21 06:47
Normal topic Rosetta Script for ddg_monomer protocol 16
by cossio » Thu, 2018-01-25 08:23
2
2,761 by cossio
Sun, 2018-03-11 09:12
Normal topic Rosetta scripts crash in CM workflow
by jlburkhead » Tue, 2019-12-03 22:55
1
1,711 by danpf
Fri, 2020-02-21 18:37
Hot topic Rosetta Scripts: Loop Modeling w. Selective Repacking
by aroop » Mon, 2013-01-07 08:45
24
20,236 by aroop
Mon, 2014-04-21 06:47
Normal topic Rosetta ScriptsFeatures Reporter issue
by David Weis » Sun, 2017-03-12 08:19
5
4,887 by David Weis
Mon, 2017-03-13 10:59
Normal topic rosetta's keyword list
by fred » Tue, 2014-01-21 06:03
1
2,804 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta-Holes Scoring Function
by kroberts » Fri, 2011-05-13 14:05
11
15,255 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
6,254 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic rosetta3.4 fragment file problem
by David Hoover » Wed, 2012-05-16 14:42
4
4,378 by dgront
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
5,140 by jianqing
Mon, 2014-04-21 06:47
Normal topic RosettaAntibody - No matching templates for CDR1
by agctomer » Tue, 2021-01-19 22:45
0
1,004 by agctomer
Tue, 2021-01-19 22:45
Normal topic RosettaAntibody core.pose.util error
by rishibedi » Fri, 2018-10-05 01:31
2
2,798 by esozdemir
Thu, 2019-06-13 12:19
Normal topic RosettaAntibody3 - How can I model an extended H3?
by brspurri » Fri, 2020-08-28 09:11
0
908 by brspurri
Fri, 2020-08-28 09:11
Normal topic RosettaAntibody3 core.pose.util error
by linhhoang157 » Tue, 2020-07-28 12:40
0
1,045 by linhhoang157
Tue, 2020-07-28 12:40
Normal topic RosettaAntibody3 is failing with "Error: no input sequences were specified!"
by brspurri » Sun, 2020-08-16 16:16
4
2,918 by brspurri
Tue, 2020-08-18 09:57
Normal topic RosettaAntibodyDesign: How can I run the protocol without allowing design?
by brspurri » Tue, 2020-05-26 08:12
5
3,117 by brspurri
Wed, 2020-06-03 13:20
Normal topic RosettaAntibodyDesign] How can I use run_relax and run_snugdock as part of my command and workflow?
by brspurri » Thu, 2020-05-14 11:15
2
1,741 by brspurri
Thu, 2020-05-14 12:24
Normal topic RosettaCM
by jlawrie » Fri, 2020-08-14 14:09
0
1,572 by jlawrie
Fri, 2020-08-14 14:09
Normal topic RosettaCM
by DmitriiN » Sun, 2017-01-22 17:52
3
3,169 by smlewis
Mon, 2017-01-23 06:26
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
5,212 by rmoretti
Thu, 2017-06-01 08:52
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
7,539 by rmoretti
Tue, 2015-11-24 15:30
Normal topic RosettaCM hybridize mover error after fragment picking
by amorin » Thu, 2018-09-06 11:03
2
2,513 by dnamkr
Thu, 2019-12-26 10:22
Normal topic RosettaCM Ignoring Ligand
by Delfosse57 » Sun, 2022-12-04 12:05
0
4,018 by Delfosse57
Sun, 2022-12-04 12:05
Normal topic RosettaCM input file for running on Stampede
by smathersc » Wed, 2017-01-18 16:12
3
3,337 by rmoretti
Thu, 2017-02-02 09:02
Hot topic rosettaCM not recognizing Mn atom
by banshee » Mon, 2016-09-12 23:33
20
17,316 by rmoretti
Wed, 2018-11-21 15:45
Normal topic RosettaCM or FastRelax?
by Tianyang89 » Wed, 2020-09-23 07:46
3
2,280 by danpf
Thu, 2020-09-24 13:44
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
4,991 by rmoretti
Thu, 2017-01-19 09:11
Normal topic RosettaCM/hybridize
by kywei » Wed, 2021-04-28 09:56
1
1,120 by vmulligan
Wed, 2021-04-28 12:59
Normal topic RosettaCM: An internal error has occurred when "Running the Hybridize mover"
by haom » Mon, 2020-06-15 05:56
4
2,597 by haom
Tue, 2020-06-16 05:55
Normal topic RosettaDesign error with Option file open failed
by xingqing326 » Sun, 2020-04-19 01:56
4
4,203 by xingqing326
Tue, 2020-04-21 19:11
Normal topic RosettaDNA error
by deltag » Fri, 2012-12-07 06:09
10
10,147 by deltag
Mon, 2014-04-21 06:47
Normal topic RosettaDock - Constraints File
by edpryor » Wed, 2012-09-19 06:23
9
13,034 by joeg
Mon, 2014-04-21 06:47
Normal topic RosettaDock 4.0 ambiguous ERROR
by sam_dc » Fri, 2022-03-18 09:36
3
2,205 by rmoretti
Tue, 2022-03-22 09:10
Normal topic RoseTTaFold
by ozsolomon » Thu, 2021-10-07 05:27
2
2,497 by ozsolomon
Thu, 2021-10-07 14:25
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
7,136 by Gerdes
Fri, 2014-02-07 06:48
Normal topic RosettaLigand Docking
by Dinesh Kumar » Mon, 2018-01-15 20:54
1
2,270 by rmoretti
Tue, 2018-01-16 07:24
Normal topic RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour()
by sam_dc » Thu, 2021-03-25 09:32
2
2,478 by sam_dc
Mon, 2021-04-12 07:24
Normal topic ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result???
by Ryhon Wang » Mon, 2016-01-04 22:36
1
3,205 by rmoretti
Tue, 2016-01-05 08:35
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
5,982 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic RosettaMatch
by xingqing326 » Mon, 2019-07-22 13:14
1
1,951 by rmoretti
Mon, 2019-08-26 12:57
Normal topic RosettaMatch and CST files
by mwfranklin » Mon, 2016-07-25 11:49
0
2,259 by mwfranklin
Mon, 2016-07-25 11:49
Normal topic RosettaMatch outputs
by mwfranklin » Tue, 2016-10-11 11:46
1
2,339 by rmoretti
Fri, 2016-10-14 08:56
Normal topic RosettaMP: issue with generating .lips4 file
by ksy141 » Mon, 2019-01-21 17:17
5
3,691 by noahC_noahDo
Fri, 2020-11-20 11:29
Normal topic RosettaRemodel
by gw » Wed, 2011-09-14 13:24
2
3,744 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
7,770 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist.
by kamau » Fri, 2017-12-01 08:42
1
1,793 by kamau
Wed, 2017-12-13 14:31
Normal topic RosettaScript Segmentation Fault (crash log attached)
by chrisHKL » Thu, 2020-03-05 07:21
2
2,555 by chrisHKL
Thu, 2020-03-05 09:11
Normal topic RosettaScripts - FastRelax loops
by jtmacd » Wed, 2015-11-18 09:32
2
4,171 by jtmacd
Fri, 2015-12-04 03:11
Normal topic RosettaScripts - SetupNCS mover
by felipet » Fri, 2016-03-25 12:42
2
2,841 by rmoretti
Fri, 2016-04-29 08:26
Normal topic RosettaScripts filter BuriedUnsatHbonds2 missing still
by zdaw » Fri, 2020-12-11 12:39
3
1,943 by zdaw
Tue, 2020-12-15 15:38
Normal topic RosettaScripts LinkResidues
by Yero » Fri, 2019-05-17 05:26
5
4,388 by Yero
Thu, 2019-07-18 01:39
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