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Rosetta 3 - Applications
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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1,084 |
by jlawrie Fri, 2020-08-14 14:09 |
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RosettaCM by DmitriiN » Sun, 2017-01-22 17:52 |
3 |
2,431 |
by smlewis Mon, 2017-01-23 06:26 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
5 |
4,132 |
by rmoretti Thu, 2017-06-01 08:52 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
6,435 |
by rmoretti Tue, 2015-11-24 15:30 |
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RosettaCM hybridize mover error after fragment picking by amorin » Thu, 2018-09-06 11:03 |
2 |
1,854 |
by dnamkr Thu, 2019-12-26 10:22 |
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RosettaCM Ignoring Ligand by Delfosse57 » Sun, 2022-12-04 12:05 |
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274 |
by Delfosse57 Sun, 2022-12-04 12:05 |
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RosettaCM input file for running on Stampede by smathersc » Wed, 2017-01-18 16:12 |
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2,625 |
by rmoretti Thu, 2017-02-02 09:02 |
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rosettaCM not recognizing Mn atom by banshee » Mon, 2016-09-12 23:33 |
20 |
13,714 |
by rmoretti Wed, 2018-11-21 15:45 |
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RosettaCM or FastRelax? by Tianyang89 » Wed, 2020-09-23 07:46 |
3 |
1,438 |
by danpf Thu, 2020-09-24 13:44 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
5 |
4,031 |
by rmoretti Thu, 2017-01-19 09:11 |
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RosettaCM/hybridize by kywei » Wed, 2021-04-28 09:56 |
1 |
647 |
by vmulligan Wed, 2021-04-28 12:59 |
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RosettaCM: An internal error has occurred when "Running the Hybridize mover" by haom » Mon, 2020-06-15 05:56 |
4 |
1,653 |
by haom Tue, 2020-06-16 05:55 |
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RosettaDesign error with Option file open failed by xingqing326 » Sun, 2020-04-19 01:56 |
4 |
2,581 |
by xingqing326 Tue, 2020-04-21 19:11 |
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RosettaDNA error by deltag » Fri, 2012-12-07 06:09 |
10 |
8,478 |
by deltag Mon, 2014-04-21 06:47 |
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RosettaDock - Constraints File by edpryor » Wed, 2012-09-19 06:23 |
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11,146 |
by joeg Mon, 2014-04-21 06:47 |
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RosettaDock 4.0 ambiguous ERROR by sam_dc » Fri, 2022-03-18 09:36 |
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784 |
by rmoretti Tue, 2022-03-22 09:10 |
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RoseTTaFold by ozsolomon » Thu, 2021-10-07 05:27 |
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1,135 |
by ozsolomon Thu, 2021-10-07 14:25 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
6 |
5,921 |
by Gerdes Fri, 2014-02-07 06:48 |
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RosettaLigand Docking by Dinesh Kumar » Mon, 2018-01-15 20:54 |
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1,772 |
by rmoretti Tue, 2018-01-16 07:24 |
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RosettaLigand ERROR: Error in core::conformation::check_good_cutpoint_neighbour() by sam_dc » Thu, 2021-03-25 09:32 |
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1,078 |
by sam_dc Mon, 2021-04-12 07:24 |
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ROSETTALIGAND: How to prepare data to plot ROC curves using rosettaligand docking result??? by Ryhon Wang » Mon, 2016-01-04 22:36 |
1 |
2,655 |
by rmoretti Tue, 2016-01-05 08:35 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
4,926 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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RosettaMatch by xingqing326 » Mon, 2019-07-22 13:14 |
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1,386 |
by rmoretti Mon, 2019-08-26 12:57 |
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RosettaMatch and CST files by mwfranklin » Mon, 2016-07-25 11:49 |
0 |
1,864 |
by mwfranklin Mon, 2016-07-25 11:49 |
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RosettaMatch outputs by mwfranklin » Tue, 2016-10-11 11:46 |
1 |
1,832 |
by rmoretti Fri, 2016-10-14 08:56 |
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RosettaMP: issue with generating .lips4 file by ksy141 » Mon, 2019-01-21 17:17 |
5 |
2,553 |
by noahC_noahDo Fri, 2020-11-20 11:29 |
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RosettaRemodel by gw » Wed, 2011-09-14 13:24 |
2 |
3,084 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
7 |
6,559 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaRemodel: ERROR: 'Replacing' an atom which doesn't currently exist. by kamau » Fri, 2017-12-01 08:42 |
1 |
1,359 |
by kamau Wed, 2017-12-13 14:31 |
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RosettaScript Segmentation Fault (crash log attached) by chrisHKL » Thu, 2020-03-05 07:21 |
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1,640 |
by chrisHKL Thu, 2020-03-05 09:11 |
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RosettaScripts - FastRelax loops by jtmacd » Wed, 2015-11-18 09:32 |
2 |
3,558 |
by jtmacd Fri, 2015-12-04 03:11 |
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RosettaScripts - SetupNCS mover by felipet » Fri, 2016-03-25 12:42 |
2 |
2,264 |
by rmoretti Fri, 2016-04-29 08:26 |
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RosettaScripts filter BuriedUnsatHbonds2 missing still by zdaw » Fri, 2020-12-11 12:39 |
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1,215 |
by zdaw Tue, 2020-12-15 15:38 |
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RosettaScripts LinkResidues by Yero » Fri, 2019-05-17 05:26 |
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3,166 |
by Yero Thu, 2019-07-18 01:39 |
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RosettaSurface in 3.4? by skovacs » Tue, 2012-07-10 16:02 |
2 |
2,618 |
by mpacella Mon, 2014-04-21 06:47 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
5,766 |
by Anonymous Mon, 2014-04-21 06:47 |
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rosetta_2013wk52: make_fragments.pl failed by fred » Thu, 2014-01-30 12:41 |
6 |
7,639 |
by rmoretti Fri, 2014-02-07 08:01 |
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Rosetta_CM error unrecognized atom 'CS' this atom is not in PDB by rlwoltz » Thu, 2019-01-24 19:43 |
3 |
3,085 |
by bjharris Sun, 2020-08-23 14:03 |
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Rosetta_cm Partial Threading Removing Parts of Sequence by gszwabowski » Thu, 2019-06-20 12:30 |
1 |
1,251 |
by rmoretti Mon, 2019-06-24 13:43 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
2 |
812 |
by rmoretti Fri, 2021-07-09 15:05 |
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Rosetta_cm Segmentation Fault by gszwabowski » Thu, 2019-06-20 12:55 |
2 |
1,921 |
by gszwabowski Wed, 2019-06-26 10:25 |
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Rosetta_scripts error, Got some signal... It is:6 by jhm13c » Fri, 2017-04-14 14:05 |
1 |
1,724 |
by rmoretti Sat, 2017-04-15 13:30 |
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rotamer library in coupled_moves by mtyras » Fri, 2015-05-29 07:46 |
2 |
3,192 |
by mtyras Mon, 2015-06-08 03:18 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
6 |
5,166 |
by lanselibai Tue, 2014-11-11 15:28 |
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Run AbinitioRelax (rosetta 3.3) on cluster by grisha » Mon, 2011-12-12 14:20 |
18 |
15,445 |
by grisha Mon, 2014-04-21 06:47 |
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Runnig Abinitio & score app by Gaurav_kumar » Wed, 2011-11-23 20:45 |
9 |
10,382 |
by rmoretti Mon, 2014-04-21 06:47 |
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running in MPI mode and multiple scores per output PDB file? by dantimatter » Wed, 2019-10-30 09:42 |
7 |
3,795 |
by dantimatter Wed, 2019-11-06 09:51 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
7 |
4,901 |
by matteoferla Mon, 2021-07-19 06:13 |
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Running RosettaHoles2 by weehee » Wed, 2013-02-13 09:35 |
3 |
3,148 |
by weehee Mon, 2014-04-21 06:47 |
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Running snugdock was crashed by "segmentation fault" by Sunyp_IM » Mon, 2017-08-21 05:03 |
3 |
2,346 |
by rmoretti Tue, 2017-08-22 09:03 |
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running structure prediction with robetta server like automation by dhirajks » Mon, 2018-01-29 21:32 |
1 |
1,723 |
by rmoretti Tue, 2018-01-30 07:51 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
2 |
864 |
by ii_cnr Mon, 2021-04-12 23:44 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
3 |
4,211 |
by fukamitka Mon, 2014-04-21 06:47 |
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Sampling a wider range of RMSD of poses by Rosetta Dock by johnnytam100 » Tue, 2019-05-21 22:28 |
1 |
1,180 |
by johnnytam100 Thu, 2019-05-23 20:52 |
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Score - Strange message by Ashafix » Wed, 2013-11-20 15:23 |
2 |
3,106 |
by Ashafix Mon, 2014-04-21 06:48 |
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score and relax by Prasanth Kumar » Thu, 2013-05-02 05:09 |
1 |
2,964 |
by jadolfbr Mon, 2014-04-21 06:47 |
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score application by Hongtham » Tue, 2014-12-23 06:38 |
1 |
1,648 |
by rmoretti Fri, 2015-01-02 11:06 |
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Score Functions for Ligand-protein Docking by ziruiw » Sun, 2021-04-25 13:41 |
4 |
1,779 |
by ziruiw Fri, 2021-04-30 12:01 |
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score is 0 in the output? - RosettaScripts by chrisHKL » Thu, 2020-03-05 09:33 |
0 |
670 |
by chrisHKL Thu, 2020-03-05 12:58 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,111 |
by weitzner Mon, 2014-04-21 06:47 |
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Score.sc file showing total score 0 for all protein structures created by aanshi » Wed, 2022-11-23 11:13 |
1 |
1,147 |
by nannemdp Mon, 2022-11-28 09:39 |
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score:weights for fixbb application in Rosetta 3.5 by tylerborrman » Tue, 2015-07-28 14:16 |
2 |
2,341 |
by tylerborrman Wed, 2015-09-23 10:51 |
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score_jd2 errors out with: ERROR: [ERROR] Error opening RBSeg file 'batch_000065_000059' by sn » Fri, 2017-03-24 12:26 |
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1,501 |
by rmoretti Fri, 2017-03-24 13:39 |
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score_jd2.linuxgccrelease documentation by fglaser » Mon, 2011-08-01 04:08 |
1 |
3,530 |
by smlewis Mon, 2014-04-21 06:47 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
2 |
4,741 |
by fred Tue, 2014-04-01 08:24 |
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Scoring after HBNet by HHL_SIUC » Wed, 2020-07-01 10:49 |
0 |
571 |
by HHL_SIUC Wed, 2020-07-01 10:49 |
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Scoring docking error by almeida85 » Wed, 2020-09-02 01:32 |
2 |
1,177 |
by almeida85 Wed, 2020-09-02 06:14 |
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Scoring functions: talaris2013 incompatible versions by Smbat » Tue, 2020-10-13 06:18 |
5 |
2,094 |
by Astghik Thu, 2020-10-15 00:48 |
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scoring input pdbs as the same as docking score by hamedkhakzad » Fri, 2016-07-01 07:15 |
3 |
3,073 |
by rmoretti Tue, 2016-07-12 09:05 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
6 |
5,058 |
by rmoretti Thu, 2014-11-20 10:46 |
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Scoring residue vs. organic ligand by almeida » Tue, 2014-04-08 12:18 |
12 |
12,029 |
by rmoretti Thu, 2014-04-24 14:43 |
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Script for loop modeling: how to define loop sequence by batch2k » Thu, 2014-10-30 12:58 |
1 |
1,879 |
by jadolfbr Fri, 2014-10-31 08:45 |
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Secondary Matching build_sets Error by enmirts » Wed, 2018-03-28 10:33 |
0 |
858 |
by enmirts Wed, 2018-03-28 10:34 |
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SecundaryStructure Filter by Soler » Sun, 2021-11-21 22:20 |
0 |
414 |
by Soler Sun, 2021-11-21 22:20 |
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Segfault error while running MR Rosetta in Phenix by memilton » Thu, 2021-12-16 09:09 |
0 |
425 |
by memilton Thu, 2021-12-16 09:09 |
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Segfault with Pepspec by almeida85 » Thu, 2021-02-11 02:56 |
0 |
443 |
by almeida85 Thu, 2021-02-11 02:56 |
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Segment File Gen - no ouput by CATarr » Wed, 2019-10-09 19:05 |
0 |
657 |
by CATarr Wed, 2019-10-09 19:05 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
4 |
4,525 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
5,873 |
by Corvin Tue, 2020-11-10 01:22 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
6,596 |
by rmoretti Mon, 2014-04-21 06:47 |
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Segmentation Fault during prepacking by Sunyp_IM » Fri, 2020-06-12 11:24 |
4 |
2,216 |
by Sunyp_IM Thu, 2020-07-09 18:40 |
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Segmentation Fault in Fragment picking by ashu4487 » Fri, 2018-07-06 20:47 |
2 |
2,657 |
by ashu4487 Mon, 2018-07-16 19:24 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
2 |
418 |
by yliang20 Tue, 2022-06-07 08:36 |
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Segmentation fault when running Abinito Relax by Hongtham » Mon, 2014-12-15 07:16 |
1 |
2,767 |
by rmoretti Fri, 2015-01-02 11:45 |
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select_best_unique_ligand_poses - Ligand docking by subha » Thu, 2018-04-19 10:36 |
4 |
2,588 |
by subha Fri, 2018-04-20 12:49 |
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select_best_unique_ligand_poses output by ast » Thu, 2013-07-11 02:33 |
2 |
2,905 |
by ast Mon, 2014-04-21 06:48 |
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sequence design to enhance Fc / Fc-g Receptor binding by jarod » Tue, 2017-05-23 09:00 |
1 |
1,400 |
by jadolfbr Thu, 2017-06-01 10:00 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
4 |
4,871 |
by fede Wed, 2020-09-23 11:24 |
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Setting pivots points for GenKIC by almeida85 » Tue, 2022-10-25 02:32 |
0 |
1,098 |
by almeida85 Tue, 2022-10-25 02:32 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
2 |
758 |
by browns02 Tue, 2021-06-29 11:41 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
5,149 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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shape complementarity by holdenj » Fri, 2022-07-15 13:24 |
1 |
266 |
by rmoretti Fri, 2022-07-15 13:50 |
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Should FastRelax be commented out in Calculate_protein_protein_ddg demo? by cossio » Mon, 2016-10-31 12:01 |
11 |
7,838 |
by cossio Mon, 2016-11-21 07:56 |
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Should I be stripping water molecules from my input structure for Rosetta Design? by chrisHKL » Wed, 2021-03-24 14:22 |
1 |
705 |
by smlewis Wed, 2021-03-24 14:59 |
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Should I trust the score output from relax used with a protein complex? by cossio » Thu, 2015-05-07 06:08 |
1 |
1,812 |
by rmoretti Mon, 2015-05-25 12:37 |
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side chain repacking error by malkeet.singh » Thu, 2017-12-07 04:49 |
4 |
3,109 |
by smlewis Wed, 2017-12-13 09:54 |
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Side-chain grafting at the fixed protein and position by Kazu » Wed, 2020-05-20 08:49 |
0 |
544 |
by Kazu Wed, 2020-05-20 08:49 |
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Simple comparative modeling (threading) example is failing with "unknown atom name: CA CB" by brspurri » Fri, 2017-03-24 10:52 |
3 |
3,082 |
by brspurri Fri, 2017-03-24 11:35 |
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simple_cycpep_predict - Design mode - The base name "ARG" was added more than once by almeida85 » Thu, 2022-08-04 02:57 |
4 |
432 |
by almeida85 Thu, 2022-08-11 00:58 |
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simple_cycpep_predict thioether_lariat option by Ken » Mon, 2022-03-14 15:14 |
0 |
298 |
by Ken Mon, 2022-03-14 15:14 |
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