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Rosetta 3 - Applications
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De novo model-building guided by exprimental density data by dee2711453 » Thu, 2016-03-10 17:28 |
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2,757 |
by dee2711453 Fri, 2016-03-11 21:32 |
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ddg_monomer: what is the theoretical solution condition for the scoring? by lanselibai » Sat, 2016-04-30 03:26 |
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3,031 |
by smlewis Mon, 2016-05-02 08:20 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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5,563 |
by rmoretti Thu, 2015-04-16 11:23 |
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Ddg_monomer: implementing disulfides by kabol » Wed, 2016-11-30 02:39 |
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1,767 |
by rmoretti Wed, 2016-11-30 07:46 |
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ddg_monomer: if MPI executable is reproducible and efficient? by lanselibai » Sun, 2015-01-11 09:48 |
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1,296 |
by lanselibai Sun, 2015-01-11 10:50 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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5,118 |
by lanselibai Sun, 2015-03-01 15:00 |
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ddg_monomer.mpi by gw » Thu, 2011-10-27 16:45 |
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3,335 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close? by cossio » Fri, 2014-12-26 13:11 |
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1,662 |
by rmoretti Tue, 2015-01-13 07:44 |
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ddg_monomer problem by deltag » Wed, 2012-04-04 07:53 |
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9,878 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer mutations list: How to specify chain ID? by cossio » Tue, 2014-12-09 14:26 |
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12,793 |
by rmoretti Thu, 2016-04-28 16:43 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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4,349 |
by rmoretti Mon, 2018-03-19 12:12 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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3,964 |
by yperez Mon, 2014-04-21 06:47 |
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DDG_monomer application by shadrinams » Mon, 2018-02-12 12:14 |
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2,232 |
by shadrinams Wed, 2018-03-14 07:46 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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4,748 |
by afmo Thu, 2014-05-22 01:19 |
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ddg_monomer "ERROR: seqpos >= 1" by cossio » Fri, 2015-10-02 12:20 |
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1,798 |
by rmoretti Fri, 2015-10-02 12:30 |
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DDG_monomer ΔΔG question by asbelx » Fri, 2018-04-20 03:31 |
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837 |
by asbelx Fri, 2018-04-20 03:33 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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3,971 |
by rmoretti Wed, 2014-07-02 16:55 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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4,269 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg monomer vs pmut scan by dave » Tue, 2014-03-04 10:18 |
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3,636 |
by smlewis Fri, 2014-03-07 13:02 |
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ddG Monomer Low Res Protocol Convergence by harshkhare » Thu, 2012-03-01 00:45 |
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3,208 |
by harshkhare Mon, 2014-04-21 06:47 |
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DDG monomer and backrub motions by yperez » Thu, 2012-06-21 08:10 |
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2,792 |
by yperez Mon, 2014-04-21 06:47 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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750 |
by rmoretti Wed, 2020-03-04 09:56 |
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ddG filter gives deltaG calculation number? by jarod » Tue, 2013-05-28 23:43 |
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3,271 |
by jarod Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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4,821 |
by smlewis Mon, 2014-04-21 06:47 |
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ddG calculations to study point mutations by N.Chopra » Fri, 2018-12-07 12:36 |
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1,428 |
by jeliazkov Fri, 2018-12-07 12:51 |
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ddG calculation by malkeet.singh » Sun, 2017-06-25 07:53 |
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17,960 |
by malkeet.singh Tue, 2017-11-14 04:33 |
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DDG and interaction score problem by a-eatemadi@razi... » Mon, 2018-04-09 22:54 |
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823 |
by a-eatemadi@razi... Mon, 2018-04-09 22:54 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
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625 |
by vmulligan Tue, 2021-07-06 08:27 |
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cyclization_type flag in simple_cycpep_predict by Florent Langenfeld » Thu, 2018-01-04 09:22 |
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3,100 |
by Florent Langenfeld Tue, 2018-03-27 11:44 |
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csrosetta.org login by jfeuva » Tue, 2014-12-09 14:49 |
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24,057 |
by jfeuva Tue, 2014-12-09 14:49 |
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CSrosetta run problem by erin_cutts » Fri, 2013-06-28 09:52 |
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3,116 |
by erin_cutts Mon, 2014-04-21 06:48 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
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5,744 |
by Marius1987 Fri, 2016-02-05 07:20 |
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cryptic error message from remodel in rosetta_scripts by petrikigor » Mon, 2012-12-03 15:13 |
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6,927 |
by petrikigor Mon, 2014-04-21 06:47 |
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cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else? by dantimatter » Wed, 2019-10-16 14:59 |
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2,099 |
by dantimatter Wed, 2019-10-30 09:43 |
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cross correlation calculation by jingwei xu » Sat, 2016-04-16 19:11 |
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2,085 |
by jingwei xu Wed, 2016-05-04 23:26 |
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Creating model of 89-90 residues by ab initio methodology-help by krlitros87 » Sun, 2014-05-25 12:12 |
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1,783 |
by rmoretti Mon, 2014-05-26 09:29 |
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Creating fragment files for proteins less than 27 aa in length by Poladu » Tue, 2021-01-26 07:50 |
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421 |
by Poladu Tue, 2021-01-26 07:50 |
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creating compound task mover by aaj » Wed, 2016-02-24 04:48 |
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1,982 |
by aaj Wed, 2016-02-24 07:37 |
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creating a model using a base pdb and extending a chain by rlwoltz » Fri, 2013-07-12 15:35 |
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2,249 |
by nawsad Mon, 2014-04-21 06:48 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,068 |
by fred Wed, 2014-12-03 12:28 |
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Coverage of sequence space? by johnnytam100 » Sun, 2019-04-21 23:25 |
4 |
2,424 |
by johnnytam100 Thu, 2019-04-25 19:28 |
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CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
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3,382 |
by amorin Sat, 2021-02-27 20:29 |
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Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex by benhardy » Mon, 2020-06-15 09:33 |
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1,238 |
by benhardy Fri, 2020-06-19 07:55 |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
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66 |
by yliang20 Wed, 2022-06-15 13:46 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
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671 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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core.optimization.LineMinimizer: [ ERROR ] Inaccurate G! by aralz » Thu, 2021-02-11 00:46 |
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499 |
by aralz Thu, 2021-02-11 00:46 |
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conway2016 correction on beta-nov15? by attesor » Wed, 2017-03-15 05:26 |
5 |
3,223 |
by attesor Thu, 2017-03-16 01:21 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
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4,444 |
by smlewis Tue, 2017-07-04 15:42 |
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contents of span file by tevang » Mon, 2013-04-15 05:01 |
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2,145 |
by smlewis Mon, 2014-04-21 06:47 |
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Constraints in RosettaCM by kbuhr » Fri, 2015-07-31 06:55 |
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3,350 |
by kbuhr Mon, 2016-03-28 01:08 |
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constraints in Rosetta ligand docking (AddorRemoveMatchCsts, Addconstraints Mover, and ConstraintSetMover) by rohi » Mon, 2021-01-11 13:32 |
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568 |
by rohi Mon, 2021-01-11 13:58 |
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Constraint generator by Alison_Yajie » Wed, 2020-06-17 20:14 |
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716 |
by Alison_Yajie Wed, 2020-06-17 20:35 |
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constraining different chains together in rosetta_cm by y_atsmonraz » Thu, 2021-11-18 02:59 |
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275 |
by y_atsmonraz Thu, 2021-11-18 03:01 |
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connecting rna strands together by y_atsmonraz » Tue, 2021-11-09 05:42 |
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294 |
by y_atsmonraz Thu, 2021-11-11 04:51 |
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Connecting linkers by Prasanth Kumar » Tue, 2014-05-06 00:53 |
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2,530 |
by smlewis Mon, 2014-05-12 08:32 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
5 |
5,992 |
by rmoretti Tue, 2015-03-31 08:56 |
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conformational sampling of multi domain protein by dhirajks » Tue, 2017-07-04 11:20 |
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2,753 |
by jrporter Wed, 2017-07-05 06:30 |
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Compiling Rosetta 3.3 on Linux Mint by proteinproteindock » Thu, 2011-09-01 16:05 |
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3,052 |
by proteinproteindock Mon, 2014-04-21 06:47 |
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comparative modelling of a complex by sdh_h » Sun, 2017-12-17 06:07 |
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753 |
by sdh_h Sun, 2017-12-17 06:07 |
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comparative modelling and broker by felipet » Tue, 2013-02-05 08:33 |
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3,462 |
by smlewis Mon, 2014-04-21 06:47 |
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Comparative modeling using a two chained template for a one chain structure by ahmadkhalifa » Mon, 2017-12-18 11:00 |
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1,112 |
by rmoretti Mon, 2018-01-15 16:14 |
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Comparative Modeling Tutorial by code_Monkey » Thu, 2021-03-04 12:35 |
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537 |
by rmoretti Fri, 2021-03-05 09:35 |
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Comparative Modeling Templates for Protein with Multiple Domains by Morrian_Lynn » Wed, 2020-03-04 10:42 |
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550 |
by Morrian_Lynn Wed, 2020-03-04 10:42 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
5,172 |
by eskici Mon, 2014-04-21 06:47 |
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comparative modeling of protein-ligand complex by tevang » Mon, 2013-09-09 09:06 |
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3,605 |
by rmoretti Mon, 2014-04-21 06:48 |
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Comparative modeling of metalloproteins by ctqwong » Sun, 2020-07-12 13:51 |
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1,258 |
by ctqwong Mon, 2020-07-27 01:48 |
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comparative modeling of a homodimer by banshee » Mon, 2017-01-09 18:34 |
1 |
1,832 |
by rmoretti Wed, 2017-01-11 13:00 |
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Comparative modeling by MRH » Mon, 2013-08-19 23:08 |
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2,054 |
by smlewis Mon, 2014-04-21 06:48 |
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Collecting all decoys from batch files by aep » Sun, 2016-08-07 12:23 |
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1,909 |
by aep Sat, 2016-08-13 13:03 |
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Coding denovo prediction from density maps in PyRosetta by ahmadkhalifa » Tue, 2018-04-10 11:43 |
1 |
1,111 |
by rmoretti Tue, 2018-04-10 15:29 |
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cm_scripts by sn » Wed, 2018-02-14 11:00 |
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1,231 |
by rmoretti Wed, 2018-02-21 15:21 |
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clustering output file has few structures by fabiotrovato » Mon, 2020-08-17 11:37 |
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434 |
by fabiotrovato Mon, 2020-08-17 11:37 |
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Clustering issue by Loki01 » Thu, 2018-03-29 10:16 |
4 |
2,363 |
by Loki01 Thu, 2018-04-12 08:28 |
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clustering in RosettaRemodel by cheyuk » Wed, 2014-04-23 03:09 |
3 |
3,296 |
by rmoretti Mon, 2014-05-12 08:45 |
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clustering by ays » Tue, 2014-09-30 08:26 |
2 |
2,647 |
by rmoretti Mon, 2014-10-06 16:00 |
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cluster.mpi.linuxgccrelease failed by fred » Mon, 2014-02-24 12:11 |
3 |
7,168 |
by fred Thu, 2014-03-27 11:29 |
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cluster.mpi running in MPI mode? by sacch » Fri, 2011-11-18 23:30 |
2 |
3,741 |
by sacch Mon, 2014-04-21 06:47 |
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cluster.linuxgccrelease Killed error by samuelrpita » Fri, 2015-11-20 05:56 |
1 |
1,863 |
by rmoretti Tue, 2015-11-24 16:07 |
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cluster,how to get the statistic data by MajorID » Wed, 2011-06-08 09:20 |
0 |
1,633 |
by MajorID Mon, 2014-04-21 06:47 |
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cluster error by sudhar » Fri, 2011-06-17 05:58 |
1 |
2,414 |
by rmoretti Mon, 2014-04-21 06:47 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
2 |
4,230 |
by lanselibai Wed, 2014-09-24 13:21 |
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clean_pdb not working by Andre Serobian » Thu, 2020-07-23 04:48 |
3 |
1,393 |
by rmoretti Tue, 2020-07-28 08:24 |
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clashes created with enzdes by listofdina » Mon, 2021-08-02 06:51 |
0 |
344 |
by listofdina Mon, 2021-08-02 06:51 |
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Choosing weight file for interface design? by johnnytam100 » Tue, 2019-05-07 00:47 |
2 |
1,425 |
by johnnytam100 Tue, 2019-05-21 22:33 |
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Chemically bound ligand connection error by tsztain » Tue, 2019-01-01 18:40 |
2 |
1,528 |
by tsztain Mon, 2019-02-18 09:55 |
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Checkpoint with rosetta3.4 by AmelieH » Mon, 2014-12-01 15:51 |
1 |
2,043 |
by rmoretti Wed, 2014-12-03 19:07 |
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charge grid in rosetta ligand docking using rosetta script by syntekabio2019 » Mon, 2022-01-17 23:53 |
0 |
227 |
by syntekabio2019 Mon, 2022-01-17 23:53 |
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Changing scoring function for fixbb protocol by mdyini » Sat, 2012-07-07 18:43 |
4 |
3,385 |
by mdyini Mon, 2014-04-21 06:47 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
1 |
694 |
by vmulligan Thu, 2020-05-21 18:33 |
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change number of output pose files written out (default=50) in ligand docking XML script by hdelrisco » Fri, 2019-10-18 13:50 |
2 |
1,123 |
by hdelrisco Fri, 2019-10-18 17:16 |
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Centroid mode minimization by Martin Floor » Tue, 2020-01-21 07:34 |
2 |
1,190 |
by Martin Floor Tue, 2020-01-21 11:15 |
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cartfrag_overlap error while running hybridize protocol by sn » Thu, 2017-12-21 10:24 |
2 |
1,559 |
by dnamkr Mon, 2019-12-30 11:43 |
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cartesian_ddg output by cossio » Thu, 2018-10-11 14:58 |
2 |
2,198 |
by cossio Fri, 2018-10-12 04:43 |
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cartesian_ddg error: "Assertion `files.size() == 1` failed." by cossio » Fri, 2018-05-11 09:59 |
2 |
2,178 |
by cossio Fri, 2018-05-18 09:51 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
0 |
698 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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CartesianRefiner compilation problem by DmitriiN » Tue, 2015-12-15 08:52 |
1 |
1,564 |
by rmoretti Tue, 2015-12-15 09:48 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
5 |
4,140 |
by sjyang7 Sat, 2017-06-03 06:09 |
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Cannot get a negative score after relax by kxiao » Tue, 2014-01-28 22:28 |
6 |
6,578 |
by rmoretti Mon, 2014-04-21 06:48 |
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Can't generate a cst file to use with ddg_monomer application by ctqwong » Sat, 2021-03-13 03:53 |
6 |
1,462 |
by ctqwong Thu, 2021-03-18 02:04 |
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Can't find RosettaRemodel in Rosetta 3.4 by petrikigor » Mon, 2012-12-03 13:56 |
0 |
1,479 |
by petrikigor Mon, 2014-04-21 06:47 |
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