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Rosetta 3 - Applications

Topic / Topic startersort ascending Replies Views Last post
Normal topic docking with constraints and flexible bb
by mintseris » Mon, 2015-06-22 09:07
2
2,784 by mintseris
Wed, 2015-06-24 22:04
Normal topic docking with constraints
by talavera » Tue, 2013-05-07 01:50
1
3,793 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Docking with constraints
by ytao » Tue, 2013-04-02 09:45
6
7,385 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking with constraint
by Hongtham » Sat, 2014-12-27 09:56
2
2,513 by rmoretti
Fri, 2015-01-02 09:43
Normal topic docking with capping groups
by xavierfradera » Sun, 2018-11-04 16:17
1
1,300 by maral.adeli-kou...
Wed, 2020-01-22 12:41
Normal topic Docking to TM protein plus lipid bilayer
by renedominik » Tue, 2019-03-12 06:58
3
2,651 by renedominik
Tue, 2020-02-18 01:36
Normal topic Docking the border segments of coiled coils in parallel orientation
by Corvin » Mon, 2019-12-02 02:00
0
798 by Corvin
Mon, 2019-12-02 02:00
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
4,330 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Docking seems to not parse the -nstruct flag
by rosend » Tue, 2015-11-17 12:01
2
3,408 by rosend
Tue, 2015-11-17 12:12
Normal topic Docking protein complexes when constrained by oligomer symmetry
by msk » Tue, 2014-06-03 11:09
0
1,334 by msk
Tue, 2014-06-03 11:09
Normal topic Docking prepack vs. relax
by David Weis » Tue, 2017-02-21 05:37
1
1,804 by smlewis
Tue, 2017-02-21 07:58
Normal topic Docking Prepack protocol working or not ?
by MJG » Mon, 2017-04-03 08:02
4
3,388 by MJG
Tue, 2017-04-04 23:59
Normal topic docking parse error
by dave » Tue, 2018-12-04 08:41
1
1,647 by rmoretti
Tue, 2018-12-04 08:55
Normal topic Docking one protein into interface between two other proteins
by Cheems » Sat, 2023-05-06 09:49
3
84 by rmoretti
Mon, 2023-05-08 13:14
Normal topic Docking on mpi.
by Pernille » Mon, 2014-07-28 08:40
1
2,701 by rmoretti
Mon, 2014-08-04 14:51
Normal topic Docking of multichain oligomers
by sdh_h » Wed, 2020-03-25 12:43
0
836 by sdh_h
Wed, 2020-03-25 12:43
Normal topic Docking membrane ions and water
by jrcf » Tue, 2017-02-07 15:47
3
2,830 by smlewis
Wed, 2017-02-15 07:43
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
5,454 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking HeparinSulfate to proteins using GlycanDock
by GebauerJ » Tue, 2022-08-16 07:44
0
471 by GebauerJ
Tue, 2022-08-16 07:44
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
4,733 by AmelieH
Wed, 2014-11-19 11:26
Normal topic docking energies - deltadeltaG calculation
by ast » Fri, 2013-07-19 07:30
5
9,128 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Docking Analysis and Metrics in RosettaLigand.
by sam_dc » Tue, 2021-04-20 03:54
1
1,303 by rmoretti
Tue, 2021-04-20 13:27
Normal topic Dock two domains using topology broker
by sn » Thu, 2017-10-05 17:07
0
962 by sn
Thu, 2017-10-05 17:07
Normal topic Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively?
by johnnytam100 » Fri, 2019-08-23 21:10
1
1,095 by rmoretti
Mon, 2019-08-26 12:03
Normal topic do mpi apps share memory?
by fred » Thu, 2014-01-23 11:49
2
3,065 by fred
Mon, 2014-04-21 06:48
Normal topic DNA-protein docking
by ksteczk » Sat, 2020-04-11 11:23
0
1,083 by ksteczk
Sat, 2020-04-11 11:23
Normal topic DNA Interface design
by zadie1118 » Wed, 2011-06-22 07:05
0
2,012 by zadie1118
Mon, 2014-04-21 06:47
Normal topic Disulfidize- "Extra content at the end of the document"
by ldlamini » Tue, 2022-05-17 02:37
1
730 by rmoretti
Tue, 2022-05-17 07:29
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
4,579 by zcrook
Tue, 2014-11-25 10:27
Normal topic Disulfide Bonds in Loop Modeling
by code_Monkey » Mon, 2021-05-03 08:27
2
1,095 by code_Monkey
Thu, 2021-05-06 07:14
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
7,399 by rmoretti
Wed, 2015-09-02 12:43
Normal topic Discrepancy between the total pose energy and sum of per residue energies
by vijayan » Tue, 2013-07-02 07:24
3
4,097 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Dimeric interface redesign
by kjs1728 » Mon, 2022-05-02 21:57
0
537 by kjs1728
Mon, 2022-05-02 21:57
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
6,510 by IAndre
Mon, 2014-04-21 06:47
Normal topic dihedral_between_bonded_children: atoms are not both my children!
by pdbb » Fri, 2013-04-05 06:40
3
2,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic different value of score from rna_denovo and rna_score?
by yikanzhang » Wed, 2021-02-03 07:17
1
819 by CameronJA
Tue, 2021-06-15 20:02
Normal topic Different scoring applications (score vs score_aln vs score_jd2, etc.)?
by cossio » Fri, 2014-12-26 07:19
3
4,052 by Patrícia Antunes
Fri, 2023-01-20 11:55
Normal topic Difference between relax and mimimize_with_cst
by basvandenberg » Thu, 2012-02-09 00:16
1
2,585 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Difference between movemap and -pivot_residues
by aloshbau » Wed, 2016-02-24 13:21
1
1,928 by rmoretti
Wed, 2016-02-24 14:39
Normal topic dG_separated values comparison
by almeida85 » Mon, 2023-04-24 03:34
0
73 by almeida85
Tue, 2023-05-16 01:02
Normal topic Destination of score.fsc file
by anirbanzz » Wed, 2011-04-20 23:30
1
2,618 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design with limited number of aminoacids at given position
by sdh_h » Sun, 2016-12-04 03:44
1
1,673 by smlewis
Thu, 2016-12-08 15:50
Normal topic Design of multimeric protein
by ldlamini » Mon, 2021-01-11 07:23
0
651 by ldlamini
Mon, 2021-01-11 07:23
Normal topic Design a peptide linked to small molecule ligand
by shaunmk » Mon, 2015-03-02 09:05
1
2,289 by rmoretti
Wed, 2015-03-25 12:39
Normal topic density scoring
by Tianyang89 » Sat, 2020-08-29 04:54
1
1,354 by danpf
Sun, 2020-08-30 22:23
Normal topic denovo_density don't output a pdb file
by ylwang » Sun, 2018-11-18 17:51
0
870 by ylwang
Sun, 2018-11-18 17:51
Normal topic denovo modelling on a virus-coat protein dimer
by aseem121 » Wed, 2019-10-16 06:55
1
1,193 by danpf
Wed, 2019-10-16 13:03
Normal topic demo of molecular replacement with rosetta (mr_rosetta)
by wenchangyu2008 » Sun, 2011-03-20 05:23
8
10,251 by astrofunk12
Mon, 2014-04-21 06:47
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
5,865 by rmoretti
Mon, 2014-04-21 06:47
Normal topic debug rosetta_scripts FunFolDes run
by tatsiana.bylund » Sun, 2019-08-18 23:17
1
1,217 by neelamraju.srid...
Wed, 2020-11-18 05:47
Normal topic De novo water predictions using SPaDES
by MNP1986 » Mon, 2019-03-25 07:53
1
1,497 by matteoferla
Tue, 2020-08-04 09:30
Normal topic De novo structure building with medium resolution map
by BuddySphinx » Tue, 2019-07-02 09:07
2
1,696 by BuddySphinx
Tue, 2019-07-02 12:03
Normal topic De novo model-building guided by exprimental density data
by dee2711453 » Thu, 2016-03-10 17:28
3
3,199 by dee2711453
Fri, 2016-03-11 21:32
Normal topic ddg_monomer: what is the theoretical solution condition for the scoring?
by lanselibai » Sat, 2016-04-30 03:26
3
3,431 by smlewis
Mon, 2016-05-02 08:20
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
6,212 by rmoretti
Thu, 2015-04-16 11:23
Normal topic Ddg_monomer: implementing disulfides
by kabol » Wed, 2016-11-30 02:39
1
2,042 by rmoretti
Wed, 2016-11-30 07:46
Normal topic ddg_monomer: if MPI executable is reproducible and efficient?
by lanselibai » Sun, 2015-01-11 09:48
0
1,478 by lanselibai
Sun, 2015-01-11 10:50
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
5,739 by lanselibai
Sun, 2015-03-01 15:00
Normal topic ddg_monomer.mpi
by gw » Thu, 2011-10-27 16:45
3
3,770 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer with -ddg::local_opt_only true, will it affect other chains that are close?
by cossio » Fri, 2014-12-26 13:11
1
1,884 by rmoretti
Tue, 2015-01-13 07:44
Normal topic ddg_monomer problem
by deltag » Wed, 2012-04-04 07:53
11
11,133 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer mutations list: How to specify chain ID?
by cossio » Tue, 2014-12-09 14:26
13
15,251 by rmoretti
Thu, 2016-04-28 16:43
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
5,298 by rmoretti
Mon, 2018-03-19 12:12
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
4,467 by yperez
Mon, 2014-04-21 06:47
Normal topic DDG_monomer application
by shadrinams » Mon, 2018-02-12 12:14
2
2,730 by shadrinams
Wed, 2018-03-14 07:46
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
5,215 by afmo
Thu, 2014-05-22 01:19
Normal topic ddg_monomer "ERROR: seqpos >= 1"
by cossio » Fri, 2015-10-02 12:20
1
2,016 by rmoretti
Fri, 2015-10-02 12:30
Normal topic DDG_monomer ΔΔG question
by asbelx » Fri, 2018-04-20 03:31
0
994 by asbelx
Fri, 2018-04-20 03:33
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
4,516 by rmoretti
Wed, 2014-07-02 16:55
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
4,903 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg monomer vs pmut scan
by dave » Tue, 2014-03-04 10:18
3
4,038 by smlewis
Fri, 2014-03-07 13:02
Normal topic ddG Monomer Low Res Protocol Convergence
by harshkhare » Thu, 2012-03-01 00:45
2
3,537 by harshkhare
Mon, 2014-04-21 06:47
Normal topic DDG monomer and backrub motions
by yperez » Thu, 2012-06-21 08:10
2
3,083 by yperez
Mon, 2014-04-21 06:47
Normal topic Ddg filter threshold value?
by chrisHKL » Fri, 2020-02-28 15:01
1
1,001 by rmoretti
Wed, 2020-03-04 09:56
Normal topic ddG filter gives deltaG calculation number?
by jarod » Tue, 2013-05-28 23:43
2
3,602 by jarod
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
5,464 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddG calculations to study point mutations
by N.Chopra » Fri, 2018-12-07 12:36
1
1,789 by jeliazkov
Fri, 2018-12-07 12:51
Hot topic ddG calculation
by malkeet.singh » Sun, 2017-06-25 07:53
32
21,291 by malkeet.singh
Tue, 2017-11-14 04:33
Normal topic DDG and interaction score problem
by a-eatemadi@razi... » Mon, 2018-04-09 22:54
0
1,012 by a-eatemadi@razi...
Mon, 2018-04-09 22:54
Normal topic D-amino acids tripeptide docking.
by sam_dc » Sat, 2021-07-03 08:48
2
1,052 by vmulligan
Tue, 2021-07-06 08:27
Normal topic cyclization_type flag in simple_cycpep_predict
by Florent Langenfeld » Thu, 2018-01-04 09:22
5
3,778 by Florent Langenfeld
Tue, 2018-03-27 11:44
Normal topic csrosetta.org login
by jfeuva » Tue, 2014-12-09 14:49
0
24,241 by jfeuva
Tue, 2014-12-09 14:49
Normal topic CSrosetta run problem
by erin_cutts » Fri, 2013-06-28 09:52
2
3,392 by erin_cutts
Mon, 2014-04-21 06:48
Normal topic CS-Rosetta cofactor
by martongadanecz » Wed, 2022-08-03 01:05
0
477 by martongadanecz
Wed, 2022-08-03 01:05
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
6,454 by Marius1987
Fri, 2016-02-05 07:20
Normal topic cryptic error message from remodel in rosetta_scripts
by petrikigor » Mon, 2012-12-03 15:13
9
7,725 by petrikigor
Mon, 2014-04-21 06:47
Normal topic cryptic error "Got some signal... It is:15" -- an issue with 'fixbb', or something else?
by dantimatter » Wed, 2019-10-16 14:59
5
2,702 by dantimatter
Wed, 2019-10-30 09:43
Normal topic cross correlation calculation
by jingwei xu » Sat, 2016-04-16 19:11
2
2,398 by jingwei xu
Wed, 2016-05-04 23:26
Normal topic Creating model of 89-90 residues by ab initio methodology-help
by krlitros87 » Sun, 2014-05-25 12:12
1
2,028 by rmoretti
Mon, 2014-05-26 09:29
Normal topic Creating fragment files for proteins less than 27 aa in length
by Poladu » Tue, 2021-01-26 07:50
0
614 by Poladu
Tue, 2021-01-26 07:50
Normal topic creating compound task mover
by aaj » Wed, 2016-02-24 04:48
2
2,298 by aaj
Wed, 2016-02-24 07:37
Normal topic creating a model using a base pdb and extending a chain
by rlwoltz » Fri, 2013-07-12 15:35
1
2,473 by nawsad
Mon, 2014-04-21 06:48
Normal topic crazy loopmodel: linear output pdbs
by fred » Wed, 2014-12-03 12:27
0
1,215 by fred
Wed, 2014-12-03 12:28
Normal topic Coverage of sequence space?
by johnnytam100 » Sun, 2019-04-21 23:25
4
3,070 by johnnytam100
Thu, 2019-04-25 19:28
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
4,873 by amorin
Sat, 2021-02-27 20:29
Normal topic Coupled Moves crash with Membrane Protein - residue_edge is undefined for root vertex
by benhardy » Mon, 2020-06-15 09:33
3
1,682 by benhardy
Fri, 2020-06-19 07:55
Normal topic Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations
by yliang20 » Wed, 2022-06-15 11:26
2
770 by yliang20
Wed, 2022-06-15 13:46
Normal topic core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by AlfredoKCL » Sat, 2020-11-07 18:21
0
937 by AlfredoKCL
Sat, 2020-11-07 18:21
Normal topic core.pose.util: (0) {0} [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard
by ldx022 » Thu, 2023-03-16 04:13
0
810 by ldx022
Thu, 2023-03-16 04:13
Normal topic core.optimization.LineMinimizer: [ ERROR ] Inaccurate G!
by aralz » Thu, 2021-02-11 00:46
0
729 by aralz
Thu, 2021-02-11 00:46
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