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Rosetta 3 - Applications
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Adding bridged water interaction in constraint file by purvi24 » Thu, 2019-02-28 07:01 |
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4,081 |
by purvi24 Mon, 2019-03-11 06:43 |
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RosettaCM Tutorials by smathersc » Wed, 2017-01-11 15:59 |
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4,095 |
by rmoretti Thu, 2017-01-19 09:11 |
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Error when running cluster by aloshbau » Wed, 2013-05-01 20:45 |
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4,108 |
by rmoretti Mon, 2014-04-21 06:47 |
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the meaning of total_score in docking by libai2098 » Mon, 2011-03-21 05:46 |
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4,137 |
by libai2098 Mon, 2014-04-21 06:47 |
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[TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed by tevang » Wed, 2013-04-10 15:07 |
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4,156 |
by rmoretti Mon, 2014-04-21 06:47 |
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favor native residue in fixBB design by ast » Mon, 2012-12-10 06:00 |
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4,171 |
by smlewis Mon, 2014-04-21 06:47 |
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How to output all iteration structures from ddg_monomer? by cossio » Fri, 2014-12-26 13:40 |
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4,185 |
by cossio Mon, 2015-01-19 07:10 |
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RosettaCM -weights, fragments and relax by jsv » Tue, 2017-05-09 10:20 |
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4,191 |
by rmoretti Thu, 2017-06-01 08:52 |
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a question about ligand docking by yzhou » Wed, 2012-05-30 18:57 |
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4,202 |
by yzhou Mon, 2014-04-21 06:47 |
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Rosetta DNA - Protein-DNA scoring function and binding energy by tanoramb » Tue, 2012-05-08 14:00 |
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4,214 |
by smlewis Mon, 2014-04-21 06:47 |
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fixbb and ncaa's by jarek » Thu, 2012-11-08 04:55 |
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4,216 |
by jcminerlanl Thu, 2017-12-21 10:13 |
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Docking structures with ligands in cryo-EM maps by galushin » Wed, 2012-07-11 12:40 |
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4,230 |
by jadolfbr Mon, 2014-04-21 06:47 |
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pair energies across interface by irini » Fri, 2012-02-10 09:17 |
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4,235 |
by Anonymous Mon, 2014-04-21 06:47 |
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FlexPepDocking with GDP-bound protein by LI » Sun, 2011-06-12 20:02 |
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4,236 |
by rmoretti Mon, 2014-04-21 06:47 |
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Ligand atom RMSD calculation by lkrathn » Wed, 2013-08-14 21:25 |
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4,252 |
by lkrathn Mon, 2014-04-21 06:48 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Thu, 2011-02-17 12:29 |
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4,267 |
by fukamitka Mon, 2014-04-21 06:47 |
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Problems with always_constrained_relax_script by wsgosal » Wed, 2013-05-29 04:39 |
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4,282 |
by rmoretti Mon, 2014-04-21 06:47 |
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H3 modeling takes 10 days more? by jessye » Fri, 2017-10-27 03:11 |
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4,290 |
by jessye Fri, 2017-11-03 20:15 |
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ddg_monomer conformational search... by yperez » Wed, 2012-05-09 11:10 |
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4,326 |
by yperez Mon, 2014-04-21 06:47 |
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ddG_monomer by cott1117 » Thu, 2014-06-12 09:53 |
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4,328 |
by rmoretti Wed, 2014-07-02 16:55 |
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InterfaceAnalyzer problem by almeida » Mon, 2014-03-03 14:56 |
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4,330 |
by smlewis Fri, 2014-03-07 14:09 |
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ERROR: Unable to fill in missing atoms. by mieczyslaw » Tue, 2020-10-20 09:43 |
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4,335 |
by rayyoung Thu, 2021-11-18 10:13 |
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Rebuilding the structure from unknown residues by sushreet » Mon, 2016-06-27 09:32 |
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4,338 |
by rmoretti Tue, 2016-07-12 09:35 |
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Multistate design on Rosetta - no generations produced by tong » Wed, 2018-06-13 00:36 |
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4,339 |
by smlewis Thu, 2018-06-14 10:26 |
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Ligand docking and protein design of an internal pocket in a protein with a cofactor by oerbilgin » Mon, 2011-06-20 13:55 |
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4,340 |
by frichter Mon, 2014-04-21 06:47 |
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Antibody modeling by Maryam_tabasinezhad » Fri, 2015-09-04 11:00 |
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4,349 |
by rmoretti Wed, 2015-09-09 12:08 |
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fa_plane enregy term in scoring weights by ytao » Fri, 2012-11-30 20:25 |
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4,364 |
by smlewis Mon, 2014-04-21 06:47 |
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make_rot_lib issue by jarek » Thu, 2013-04-11 08:21 |
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4,364 |
by smlewis Mon, 2014-04-21 06:47 |
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assymetric dymer modelling with comparative and ab initio by marcia » Mon, 2013-10-14 08:33 |
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4,377 |
by rmoretti Mon, 2014-04-21 06:48 |
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extract_pdbs fails to open silent file when -auto_setup_metals enabled by attesor » Thu, 2015-01-15 03:22 |
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4,394 |
by attesor Tue, 2015-01-27 02:20 |
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Abrelax - Dunbrack02.lib.bin missing by omirus » Sun, 2011-09-18 06:30 |
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4,405 |
by smlewis Mon, 2014-04-21 06:47 |
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CoupledMoves not altering backbone coordinates? by amorin » Wed, 2021-01-20 11:38 |
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4,415 |
by amorin Sat, 2021-02-27 20:29 |
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Homodimer interface design by petrikigor » Fri, 2012-11-16 10:57 |
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4,419 |
by rmoretti Mon, 2014-04-21 06:47 |
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domain:domain fusion by felipet » Thu, 2017-06-15 13:13 |
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4,435 |
by felipet Fri, 2017-06-16 11:42 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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4,441 |
by zcrook Tue, 2014-11-25 10:27 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
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4,464 |
by jianqing Mon, 2014-04-21 06:47 |
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Is there a way to restrict memory usage of ddg_monomer? by cossio » Fri, 2015-01-30 14:35 |
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4,466 |
by rmoretti Mon, 2015-02-09 12:04 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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4,490 |
by rmoretti Mon, 2014-04-21 06:47 |
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using Rosetta to compute pH dependent binding? by JuliusSu » Sun, 2014-06-15 20:28 |
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4,492 |
by rmoretti Tue, 2014-06-17 08:51 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
2 |
4,501 |
by lanselibai Wed, 2014-09-24 13:21 |
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enzyme design and output_matchres_only by petrikigor » Wed, 2012-10-24 18:45 |
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4,519 |
by petrikigor Mon, 2014-04-21 06:47 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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4,528 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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4,545 |
by ks Mon, 2016-09-12 03:14 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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4,545 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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4,553 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
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4,557 |
by jingwei xu Wed, 2016-05-04 23:28 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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4,560 |
by fred Mon, 2014-04-21 06:48 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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4,565 |
by AmelieH Wed, 2014-11-19 11:26 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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4,567 |
by protos_heis Mon, 2014-04-21 06:47 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
4 |
4,579 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
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4,598 |
by smlewis Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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4,602 |
by smlewis Mon, 2014-04-21 06:47 |
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Cartesian-space refinement by sjyang7 » Wed, 2017-05-31 19:34 |
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4,645 |
by sjyang7 Sat, 2017-06-03 06:09 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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4,663 |
by rmoretti Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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4,669 |
by wangyr Mon, 2014-04-21 06:47 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
5 |
4,694 |
by rmoretti Thu, 2017-08-24 08:19 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
3 |
4,705 |
by rmoretti Mon, 2014-04-21 06:48 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
4 |
4,713 |
by wsgosal Mon, 2014-04-21 06:48 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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4,717 |
by smlewis Mon, 2014-04-21 06:47 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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4,719 |
by rmoretti Tue, 2017-07-18 09:00 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
4 |
4,720 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
2 |
4,720 |
by lanselibai Thu, 2014-11-20 02:15 |
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Segmentation Fault by ajaniharesh » Fri, 2019-03-29 11:21 |
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4,734 |
by ajaniharesh Thu, 2019-04-04 07:07 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
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4,751 |
by smlewis Mon, 2014-04-21 06:47 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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4,758 |
by rmoretti Thu, 2015-04-30 16:46 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,783 |
by jadolfbr Mon, 2014-04-21 06:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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4,788 |
by rmoretti Mon, 2014-04-21 06:48 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
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4,799 |
by fred Tue, 2014-04-01 08:24 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,800 |
by lanselibai Wed, 2014-10-15 03:52 |
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InterfaceAnalyzer：“too many tries in fill_missing_atoms!” by mxp » Tue, 2019-08-06 00:41 |
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4,813 |
by mxp Mon, 2019-08-12 18:42 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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4,864 |
by Loki01 Thu, 2018-02-15 13:54 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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4,865 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
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4,880 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,932 |
by fede Wed, 2020-09-23 11:24 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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4,944 |
by rmoretti Mon, 2017-01-23 08:52 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
6 |
4,951 |
by xfliu Mon, 2014-04-21 06:47 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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4,959 |
by Corvin Tue, 2019-10-15 01:12 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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4,973 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
5 |
4,976 |
by michael_luntan Mon, 2014-04-21 06:47 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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5,004 |
by justin Mon, 2014-04-21 06:47 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
8 |
5,013 |
by smlewis Tue, 2017-07-04 15:42 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
5 |
5,015 |
by rmoretti Mon, 2014-04-21 06:47 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
5 |
5,015 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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5,017 |
by rmoretti Thu, 2017-07-06 13:00 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
5,023 |
by jljbbc Mon, 2014-04-21 06:47 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
7 |
5,031 |
by rmoretti Mon, 2018-03-19 12:12 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
7 |
5,034 |
by matteoferla Mon, 2021-07-19 06:13 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
5 |
5,034 |
by felipet Wed, 2015-02-11 05:13 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
4 |
5,043 |
by rmoretti Mon, 2014-02-24 09:12 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
5,065 |
by afmo Thu, 2014-05-22 01:19 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
1 |
5,089 |
by smlewis Mon, 2014-04-21 06:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
5,106 |
by rmoretti Mon, 2014-04-21 06:47 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
6 |
5,109 |
by lzx32 Mon, 2014-04-21 06:47 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
5,113 |
by rmoretti Tue, 2017-06-20 09:02 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
5 |
5,117 |
by mkoohim Mon, 2014-04-21 06:47 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
6 |
5,141 |
by rmoretti Thu, 2014-11-20 10:46 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
4 |
5,188 |
by jadolfbr Tue, 2014-10-07 16:05 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
5,195 |
by weitzner Mon, 2014-04-21 06:47 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
6 |
5,212 |
by msardejani Sat, 2016-10-01 12:55 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
6 |
5,241 |
by lanselibai Tue, 2014-11-11 15:28 |
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