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Rosetta 3 - Applications
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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4,124 |
by rmoretti Thu, 2017-07-06 13:00 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,132 |
by lanselibai Wed, 2014-10-15 03:52 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
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4,137 |
by yogeshkd Mon, 2014-04-21 06:47 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,151 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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4,164 |
by wsgosal Mon, 2014-04-21 06:48 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
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4,171 |
by xfliu Mon, 2014-04-21 06:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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4,206 |
by rmoretti Mon, 2014-04-21 06:48 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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4,219 |
by rmoretti Mon, 2014-04-21 06:48 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
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4,222 |
by fred Tue, 2014-04-01 08:24 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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4,252 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
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4,258 |
by justin Mon, 2014-04-21 06:47 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
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4,264 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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4,310 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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4,311 |
by michael_luntan Mon, 2014-04-21 06:47 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
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4,316 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,325 |
by fede Wed, 2020-09-23 11:24 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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4,333 |
by lanselibai Thu, 2014-11-20 02:15 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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4,345 |
by felipet Wed, 2015-02-11 05:13 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
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4,347 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
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4,357 |
by lzx32 Mon, 2014-04-21 06:47 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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4,388 |
by rmoretti Thu, 2014-11-20 10:46 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
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4,400 |
by mkoohim Mon, 2014-04-21 06:47 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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4,406 |
by Nolanm15 Tue, 2020-06-30 08:43 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
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4,407 |
by msardejani Sat, 2016-10-01 12:55 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
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4,416 |
by jljbbc Mon, 2014-04-21 06:47 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
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4,420 |
by rmoretti Mon, 2014-02-24 09:12 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
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4,441 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
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4,480 |
by smlewis Mon, 2014-04-21 06:47 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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4,483 |
by lanselibai Tue, 2014-11-11 15:28 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
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4,490 |
by rmoretti Tue, 2017-06-20 09:02 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
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4,524 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
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4,527 |
by afmo Thu, 2014-05-22 01:19 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
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4,529 |
by weitzner Mon, 2014-04-21 06:47 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
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4,577 |
by rmoretti Mon, 2014-04-21 06:47 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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4,600 |
by jadolfbr Tue, 2014-10-07 16:05 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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4,602 |
by brianmlee Mon, 2014-11-24 19:40 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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4,632 |
by rmoretti Fri, 2015-04-24 12:02 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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4,637 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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4,667 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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4,688 |
by smlewis Mon, 2014-04-21 06:47 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
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4,709 |
by rmoretti Mon, 2014-04-21 06:47 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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4,751 |
by siciliu Thu, 2014-04-10 09:50 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
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4,809 |
by smlewis Mon, 2014-04-21 06:47 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
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4,820 |
by lzx32 Mon, 2014-04-21 06:47 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
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4,833 |
by nannemdp Mon, 2014-04-21 06:47 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
4,838 |
by jadolfbr Mon, 2014-04-21 06:48 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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4,844 |
by lanselibai Sun, 2015-03-01 15:00 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
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4,857 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
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4,885 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
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4,907 |
by eskici Mon, 2014-04-21 06:47 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
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4,917 |
by syoifczeri Sat, 2015-11-07 21:42 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
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4,918 |
by Anonymous Mon, 2014-04-21 06:47 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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4,931 |
by tfliu Mon, 2014-04-21 06:48 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
5 |
4,943 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
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5,016 |
by franfdez Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
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5,022 |
by yarovoy Mon, 2014-04-21 06:47 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
5,066 |
by rmoretti Mon, 2014-04-21 06:47 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
5,066 |
by smlewis Mon, 2014-04-21 06:47 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
5,077 |
by yogeshkd Mon, 2014-04-21 06:47 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
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5,081 |
by jadolfbr Tue, 2015-04-07 10:50 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
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5,122 |
by rmoretti Mon, 2014-11-03 15:47 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
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5,148 |
by rmoretti Tue, 2015-08-18 16:47 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
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5,166 |
by Gerdes Fri, 2014-02-07 06:48 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
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5,191 |
by albumns Mon, 2014-04-21 06:47 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
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5,197 |
by brspurri Mon, 2014-04-21 06:47 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
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5,205 |
by lanselibai Tue, 2014-12-02 09:43 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
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5,243 |
by Anonymous Mon, 2014-04-21 06:47 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
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5,267 |
by rmoretti Mon, 2015-10-12 15:10 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
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5,268 |
by rmoretti Thu, 2015-04-16 11:23 |
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Including waters in RosettaCM by ajkal » Thu, 2017-04-27 11:59 |
9 |
5,292 |
by rpavlov Tue, 2017-06-06 11:45 |
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CS-HM-Rosetta by pwurm » Thu, 2013-03-07 12:56 |
6 |
5,343 |
by Marius1987 Fri, 2016-02-05 07:20 |
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How to find cluster core structure? by assignfit » Thu, 2012-03-29 20:35 |
7 |
5,382 |
by attesor Wed, 2017-06-14 07:32 |
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where is pdb2vall.py by tevang » Thu, 2013-01-24 13:35 |
7 |
5,413 |
by dktest Mon, 2014-04-21 06:47 |
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rosetta protein protein docking start up by vk » Fri, 2011-06-24 09:01 |
5 |
5,440 |
by smlewis Mon, 2014-04-21 06:47 |
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extract silent error - tag mismatch by shrutikhare » Thu, 2014-04-03 00:13 |
5 |
5,460 |
by rmoretti Mon, 2014-04-21 10:47 |
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Enzdes score file discrepancy between generated pdb and scores.out by eyong123 » Wed, 2015-03-25 08:52 |
6 |
5,463 |
by eyong123 Mon, 2015-06-29 04:44 |
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Enzyme design with variable CST blocks possible? by petrikigor » Thu, 2011-10-06 11:24 |
6 |
5,500 |
by petrikigor Mon, 2014-04-21 06:47 |
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P-P docking with suitable constraint type by Yao Wu » Tue, 2012-11-13 18:03 |
5 |
5,513 |
by rmoretti Mon, 2014-04-21 06:47 |
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ab inito memberane(error in alignblast.pl) by kingljy » Tue, 2011-05-03 23:41 |
6 |
5,524 |
by karthishanmugam Mon, 2014-04-21 06:47 |
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ligand docking, how to combine some silent.out files into a silent_all.out file by Ryhon Wang » Fri, 2013-12-06 01:53 |
6 |
5,614 |
by rmoretti Wed, 2017-01-11 12:53 |
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About scorefunction. by Run » Mon, 2013-09-09 23:08 |
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5,619 |
by rmoretti Mon, 2014-04-21 06:48 |
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Abinitio Relax Error from -kill_hairpins by attesor » Tue, 2014-10-28 05:33 |
7 |
5,626 |
by rmoretti Tue, 2014-11-04 10:28 |
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Surface Docking Application Crash by dkozuch » Sat, 2017-09-02 18:32 |
12 |
5,633 |
by Anpu Tue, 2018-09-25 19:06 |
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Using MoveMap within Relax Application? by m_grisewood » Mon, 2012-08-13 12:21 |
5 |
5,647 |
by m_grisewood Mon, 2014-04-21 06:47 |
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Dimer of dimers by smiruthi » Fri, 2011-04-15 10:41 |
4 |
5,652 |
by IAndre Mon, 2014-04-21 06:47 |
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Abinitio (3.4) Error: no fragment to compute secondary structure by skovacs » Tue, 2012-09-18 13:49 |
6 |
5,688 |
by skovacs Mon, 2014-04-21 06:47 |
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RosettaCM Biological Assembly by jrcf » Mon, 2015-10-26 11:01 |
5 |
5,696 |
by rmoretti Tue, 2015-11-24 15:30 |
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Conformers in EnzDes by JorickF » Fri, 2015-03-06 04:41 |
5 |
5,712 |
by rmoretti Tue, 2015-03-31 08:56 |
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How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"? by lanselibai » Tue, 2014-11-04 14:56 |
7 |
5,750 |
by lanselibai Wed, 2014-11-12 11:17 |
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RosettaRemodel can not work now? by myputer » Tue, 2013-08-13 16:56 |
7 |
5,792 |
by rmoretti Mon, 2014-04-21 06:48 |
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analysis of clustering by loris.moretti » Thu, 2012-04-19 02:52 |
3 |
5,850 |
by rmoretti Mon, 2014-04-21 06:47 |
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mover "RepackMinimize" does not support chains > 2? by jarod » Mon, 2013-05-20 02:17 |
6 |
5,851 |
by jarod Mon, 2014-04-21 06:47 |
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problem creating lips4 file using run_lips.pl by adva » Sun, 2015-02-15 06:22 |
5 |
5,862 |
by linucks Mon, 2016-06-20 12:02 |
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[SOLVED]core.io.silent: [ WARNING ] ... by fred » Wed, 2011-10-05 07:38 |
8 |
5,904 |
by fred Mon, 2014-04-21 06:47 |
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Why do non proten ligands get a very high score in kinematic loop modeling/ in general? by a_s_a » Wed, 2011-06-15 00:03 |
8 |
5,921 |
by a_s_a Mon, 2014-04-21 06:47 |
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segmentation fault after core.kinematics.FoldTree in homology modeling by pdbb » Mon, 2012-10-08 14:27 |
7 |
5,925 |
by rmoretti Mon, 2014-04-21 06:47 |
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Problem about energy score by tfliu » Tue, 2013-11-05 02:09 |
7 |
5,948 |
by Ora Schueler-Furman Mon, 2014-04-21 06:48 |
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Distinctions between InterfaceAnalyzer and RosettaScript by achambe » Wed, 2015-06-17 10:14 |
6 |
5,982 |
by rmoretti Wed, 2015-09-02 12:43 |
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protein structure prediction using relax -- high-powered jobs by rfieldhouse » Mon, 2011-05-30 18:29 |
7 |
5,993 |
by dimaio Mon, 2014-04-21 06:47 |
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Incorrect Jump being set in RosettaScripts docking mover by weehee » Fri, 2012-06-08 10:23 |
6 |
6,079 |
by rmoretti Mon, 2014-04-21 06:47 |
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