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Rosetta 3 - Applications

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Normal topic Adding bridged water interaction in constraint file
by purvi24 » Thu, 2019-02-28 07:01
8
4,081 by purvi24
Mon, 2019-03-11 06:43
Normal topic RosettaCM Tutorials
by smathersc » Wed, 2017-01-11 15:59
5
4,095 by rmoretti
Thu, 2017-01-19 09:11
Normal topic Error when running cluster
by aloshbau » Wed, 2013-05-01 20:45
3
4,108 by rmoretti
Mon, 2014-04-21 06:47
Normal topic the meaning of total_score in docking
by libai2098 » Mon, 2011-03-21 05:46
2
4,137 by libai2098
Mon, 2014-04-21 06:47
Normal topic [TopologyBroker Exception]: BBTorsion at pos 468unitialized...unclaimed
by tevang » Wed, 2013-04-10 15:07
5
4,156 by rmoretti
Mon, 2014-04-21 06:47
Normal topic favor native residue in fixBB design
by ast » Mon, 2012-12-10 06:00
4
4,171 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to output all iteration structures from ddg_monomer?
by cossio » Fri, 2014-12-26 13:40
4
4,185 by cossio
Mon, 2015-01-19 07:10
Normal topic RosettaCM -weights, fragments and relax
by jsv » Tue, 2017-05-09 10:20
5
4,191 by rmoretti
Thu, 2017-06-01 08:52
Normal topic a question about ligand docking
by yzhou » Wed, 2012-05-30 18:57
5
4,202 by yzhou
Mon, 2014-04-21 06:47
Normal topic Rosetta DNA - Protein-DNA scoring function and binding energy
by tanoramb » Tue, 2012-05-08 14:00
1
4,214 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb and ncaa's
by jarek » Thu, 2012-11-08 04:55
4
4,216 by jcminerlanl
Thu, 2017-12-21 10:13
Normal topic Docking structures with ligands in cryo-EM maps
by galushin » Wed, 2012-07-11 12:40
1
4,230 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic pair energies across interface
by irini » Fri, 2012-02-10 09:17
5
4,235 by Anonymous
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking with GDP-bound protein
by LI » Sun, 2011-06-12 20:02
3
4,236 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Ligand atom RMSD calculation
by lkrathn » Wed, 2013-08-14 21:25
2
4,252 by lkrathn
Mon, 2014-04-21 06:48
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Thu, 2011-02-17 12:29
3
4,267 by fukamitka
Mon, 2014-04-21 06:47
Normal topic Problems with always_constrained_relax_script
by wsgosal » Wed, 2013-05-29 04:39
3
4,282 by rmoretti
Mon, 2014-04-21 06:47
Normal topic H3 modeling takes 10 days more?
by jessye » Fri, 2017-10-27 03:11
7
4,290 by jessye
Fri, 2017-11-03 20:15
Normal topic ddg_monomer conformational search...
by yperez » Wed, 2012-05-09 11:10
5
4,326 by yperez
Mon, 2014-04-21 06:47
Normal topic ddG_monomer
by cott1117 » Thu, 2014-06-12 09:53
3
4,328 by rmoretti
Wed, 2014-07-02 16:55
Normal topic InterfaceAnalyzer problem
by almeida » Mon, 2014-03-03 14:56
3
4,330 by smlewis
Fri, 2014-03-07 14:09
Normal topic ERROR: Unable to fill in missing atoms.
by mieczyslaw » Tue, 2020-10-20 09:43
7
4,335 by rayyoung
Thu, 2021-11-18 10:13
Normal topic Rebuilding the structure from unknown residues
by sushreet » Mon, 2016-06-27 09:32
4
4,338 by rmoretti
Tue, 2016-07-12 09:35
Normal topic Multistate design on Rosetta - no generations produced
by tong » Wed, 2018-06-13 00:36
8
4,339 by smlewis
Thu, 2018-06-14 10:26
Normal topic Ligand docking and protein design of an internal pocket in a protein with a cofactor
by oerbilgin » Mon, 2011-06-20 13:55
2
4,340 by frichter
Mon, 2014-04-21 06:47
Normal topic Antibody modeling
by Maryam_tabasinezhad » Fri, 2015-09-04 11:00
4
4,349 by rmoretti
Wed, 2015-09-09 12:08
Normal topic fa_plane enregy term in scoring weights
by ytao » Fri, 2012-11-30 20:25
4
4,364 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_rot_lib issue
by jarek » Thu, 2013-04-11 08:21
4
4,364 by smlewis
Mon, 2014-04-21 06:47
Normal topic assymetric dymer modelling with comparative and ab initio
by marcia » Mon, 2013-10-14 08:33
3
4,377 by rmoretti
Mon, 2014-04-21 06:48
Normal topic extract_pdbs fails to open silent file when -auto_setup_metals enabled
by attesor » Thu, 2015-01-15 03:22
4
4,394 by attesor
Tue, 2015-01-27 02:20
Normal topic Abrelax - Dunbrack02.lib.bin missing
by omirus » Sun, 2011-09-18 06:30
3
4,405 by smlewis
Mon, 2014-04-21 06:47
Hot topic CoupledMoves not altering backbone coordinates?
by amorin » Wed, 2021-01-20 11:38
15
4,415 by amorin
Sat, 2021-02-27 20:29
Normal topic Homodimer interface design
by petrikigor » Fri, 2012-11-16 10:57
3
4,419 by rmoretti
Mon, 2014-04-21 06:47
Normal topic domain:domain fusion
by felipet » Thu, 2017-06-15 13:13
5
4,435 by felipet
Fri, 2017-06-16 11:42
Normal topic Disulfide prediction from primary sequence
by zcrook » Wed, 2014-11-12 14:44
2
4,441 by zcrook
Tue, 2014-11-25 10:27
Normal topic RosettaAntibody
by mpendleton » Mon, 2011-04-04 10:27
3
4,464 by jianqing
Mon, 2014-04-21 06:47
Normal topic Is there a way to restrict memory usage of ddg_monomer?
by cossio » Fri, 2015-01-30 14:35
5
4,466 by rmoretti
Mon, 2015-02-09 12:04
Normal topic ligand_docking_analysis
by Prasanth Kumar » Thu, 2013-05-09 23:51
4
4,490 by rmoretti
Mon, 2014-04-21 06:47
Normal topic using Rosetta to compute pH dependent binding?
by JuliusSu » Sun, 2014-06-15 20:28
3
4,492 by rmoretti
Tue, 2014-06-17 08:51
Normal topic clean_pdb.py of Rosetta VS cleanATOM of PyRosetta
by lanselibai » Wed, 2014-09-24 03:02
2
4,501 by lanselibai
Wed, 2014-09-24 13:21
Normal topic enzyme design and output_matchres_only
by petrikigor » Wed, 2012-10-24 18:45
6
4,519 by petrikigor
Mon, 2014-04-21 06:47
Normal topic "Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application
by xfliu » Thu, 2012-06-21 09:07
4
4,528 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax with native fragments
by ks » Mon, 2016-09-05 03:03
5
4,545 by ks
Mon, 2016-09-12 03:14
Normal topic fixbb algorithm reference?
by tylerborrman » Wed, 2015-09-23 10:20
4
4,545 by tylerborrman
Mon, 2015-09-28 09:30
Normal topic Using Rosetta Docking for nucleic acids
by Adrien Guilhot » Thu, 2011-04-28 06:16
3
4,553 by Adrien Guilhot
Mon, 2014-04-21 06:47
Normal topic Rosetta relax problem
by jingwei xu » Wed, 2016-03-09 21:41
2
4,557 by jingwei xu
Wed, 2016-05-04 23:28
Normal topic minirosetta: weird behavior
by fred » Wed, 2014-01-22 05:57
4
4,560 by fred
Mon, 2014-04-21 06:48
Normal topic Docking flags
by AmelieH » Thu, 2014-11-13 08:46
5
4,565 by AmelieH
Wed, 2014-11-19 11:26
Normal topic Backrub Params Files
by protos_heis » Tue, 2012-09-18 06:15
4
4,567 by protos_heis
Mon, 2014-04-21 06:47
Normal topic Error while running RosettaLigand
by Ryhon Wang » Tue, 2013-07-30 02:51
4
4,579 by Ryhon Wang
Mon, 2014-04-21 06:48
Normal topic Missing common atom definitions in constraints
by ic3reyes » Sat, 2011-06-11 13:09
3
4,598 by smlewis
Mon, 2014-04-21 06:47
Normal topic make fragment
by zadie1118 » Thu, 2012-08-30 07:45
3
4,602 by smlewis
Mon, 2014-04-21 06:47
Normal topic Cartesian-space refinement
by sjyang7 » Wed, 2017-05-31 19:34
5
4,645 by sjyang7
Sat, 2017-06-03 06:09
Normal topic ddg with ligands
by bhaines1 » Mon, 2011-12-05 14:32
4
4,663 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How do you use two patches simulataneously with ab initio folding?
by smiruthi » Wed, 2011-12-21 15:24
5
4,669 by wangyr
Mon, 2014-04-21 06:47
Normal topic extract_pdb application parse error with silent file
by staciekim » Tue, 2017-08-22 12:39
5
4,694 by rmoretti
Thu, 2017-08-24 08:19
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
4,705 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
4,713 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Does linker modeling exist?
by aroop » Wed, 2012-02-22 07:34
5
4,717 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error src/core/scoring/MembraneTopology.cc line: 139
by Daniel Hall » Thu, 2017-07-13 04:58
6
4,719 by rmoretti
Tue, 2017-07-18 09:00
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
4,720 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic Syntax for python-based (.py) command line on cluster
by lanselibai » Fri, 2014-11-14 09:32
2
4,720 by lanselibai
Thu, 2014-11-20 02:15
Normal topic Segmentation Fault
by ajaniharesh » Fri, 2019-03-29 11:21
4
4,734 by ajaniharesh
Thu, 2019-04-04 07:07
Normal topic -score_app:linmin flag not working
by fglaser » Tue, 2011-03-01 06:04
5
4,751 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error while reading in silent file
by rweisse » Mon, 2015-04-20 00:31
4
4,758 by rmoretti
Thu, 2015-04-30 16:46
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
4,783 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
4,788 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
4,799 by fred
Tue, 2014-04-01 08:24
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
4,800 by lanselibai
Wed, 2014-10-15 03:52
Normal topic InterfaceAnalyzer:“too many tries in fill_missing_atoms!”
by mxp » Tue, 2019-08-06 00:41
8
4,813 by mxp
Mon, 2019-08-12 18:42
Normal topic Line search failed even after resetting Hessian
by Loki01 » Wed, 2017-12-13 16:52
6
4,864 by Loki01
Thu, 2018-02-15 13:54
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
4,865 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
4,880 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
4,932 by fede
Wed, 2020-09-23 11:24
Normal topic Abinitio doesn't run but does not give output or error
by Irving » Fri, 2016-10-28 10:04
6
4,944 by rmoretti
Mon, 2017-01-23 08:52
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
4,951 by xfliu
Mon, 2014-04-21 06:47
Normal topic Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database
by Corvin » Tue, 2019-10-01 02:04
6
4,959 by Corvin
Tue, 2019-10-15 01:12
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
4,973 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
4,976 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
5,004 by justin
Mon, 2014-04-21 06:47
Normal topic Converting -patch replonly residues to original sequence
by subha » Mon, 2017-06-26 13:39
8
5,013 by smlewis
Tue, 2017-07-04 15:42
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
5,015 by rmoretti
Mon, 2014-04-21 06:47
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
5,015 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
5,017 by rmoretti
Thu, 2017-07-06 13:00
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
5,023 by jljbbc
Mon, 2014-04-21 06:47
Normal topic ddg_monomer consumes massive RAM
by cossio » Fri, 2018-03-09 17:02
7
5,031 by rmoretti
Mon, 2018-03-19 12:12
Normal topic Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring
by brspurri » Wed, 2017-03-29 13:19
7
5,034 by matteoferla
Mon, 2021-07-19 06:13
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
5,034 by felipet
Wed, 2015-02-11 05:13
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
5,043 by rmoretti
Mon, 2014-02-24 09:12
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
5,065 by afmo
Thu, 2014-05-22 01:19
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
5,089 by smlewis
Mon, 2014-04-21 06:47
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
5,106 by rmoretti
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
5,109 by lzx32
Mon, 2014-04-21 06:47
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
5,113 by rmoretti
Tue, 2017-06-20 09:02
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
5,117 by mkoohim
Mon, 2014-04-21 06:47
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
5,141 by rmoretti
Thu, 2014-11-20 10:46
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
5,188 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
5,195 by weitzner
Mon, 2014-04-21 06:47
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
5,212 by msardejani
Sat, 2016-10-01 12:55
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
5,241 by lanselibai
Tue, 2014-11-11 15:28
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