You are here

Rosetta 3 - Applications

Topic / Topic starter Replies Viewssort descending Last post
Normal topic SnugDocking a VHH:antigen complex possible?
by David Weis » Thu, 2017-02-16 05:57
7
4,124 by rmoretti
Thu, 2017-07-06 13:00
Normal topic How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"?
by lanselibai » Mon, 2014-10-13 10:26
5
4,132 by lanselibai
Wed, 2014-10-15 03:52
Normal topic Multiple ligands in enzyme design application
by yogeshkd » Mon, 2013-02-11 10:13
4
4,137 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic How to estimate the effect of a mutation on the binding energy?
by ltrabuco » Tue, 2011-02-15 08:02
4
4,151 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Loop modelling before peptide docking
by wsgosal » Tue, 2013-10-01 07:24
4
4,164 by wsgosal
Mon, 2014-04-21 06:48
Normal topic Problem with hotspot constraints.
by jarek » Wed, 2012-10-17 03:22
6
4,171 by xfliu
Mon, 2014-04-21 06:47
Normal topic SymDock for docking only the ligand?
by ast » Mon, 2013-06-17 09:53
4
4,206 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Why is proline hydroxylated?
by kwonglynn » Tue, 2013-06-25 02:38
3
4,219 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score_jd2.mpi.linuxgccrelease failed
by fred » Wed, 2014-03-26 13:54
2
4,222 by fred
Tue, 2014-04-01 08:24
Normal topic Relax with protein+complex
by Prasanth Kumar » Wed, 2013-05-08 23:16
4
4,252 by Prasanth Kumar
Mon, 2014-04-21 06:47
Normal topic ab initio protein prediction using homologs
by justin » Mon, 2012-02-13 07:52
5
4,258 by justin
Mon, 2014-04-21 06:47
Normal topic how to fix the ATP HETATM by using movemap or constraint file?
by ziqi1234 » Mon, 2017-11-20 06:43
9
4,264 by ziqi1234
Wed, 2017-11-22 06:21
Normal topic fixbb with symmetry error
by Prasanth Kumar » Sun, 2014-01-26 10:56
4
4,310 by Prasanth Kumar
Mon, 2014-04-21 06:48
Normal topic flexpep docking problem
by michael_luntan » Mon, 2011-04-18 17:15
5
4,311 by michael_luntan
Mon, 2014-04-21 06:47
Normal topic RosettaLigand: How to score native pose in protein-ligand docking experiment?
by Ryhon Wang » Tue, 2015-11-10 01:30
5
4,316 by Ryhon Wang
Mon, 2016-01-04 19:59
Normal topic Sequence design with mixed fixbb-relax protocol
by kszczepaniak » Thu, 2013-10-03 08:11
4
4,325 by fede
Wed, 2020-09-23 11:24
Normal topic Syntax for python-based (.py) command line on cluster
by lanselibai » Fri, 2014-11-14 09:32
2
4,333 by lanselibai
Thu, 2014-11-20 02:15
Normal topic Pmut_scan with symmetry
by felipet » Thu, 2015-02-05 08:53
5
4,345 by felipet
Wed, 2015-02-11 05:13
Normal topic Unable to run Rosetta LoopModeling application
by BDBorrillo » Tue, 2011-07-19 14:06
2
4,347 by BDBorrillo
Mon, 2014-04-21 06:47
Normal topic loop modeling during enzyme design?
by lzx32 » Wed, 2011-11-16 00:30
6
4,357 by lzx32
Mon, 2014-04-21 06:47
Normal topic scoring of beta sandwich protein
by attesor » Mon, 2014-11-17 08:24
6
4,388 by rmoretti
Thu, 2014-11-20 10:46
Normal topic rna structure prediction
by cbala » Thu, 2011-04-14 07:42
5
4,400 by mkoohim
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acids
by wsgosal » Tue, 2014-03-18 05:29
5
4,406 by Nolanm15
Tue, 2020-06-30 08:43
Normal topic symmetric design in the presence of a nonsymmetric ligand
by msardejani » Fri, 2016-09-30 15:17
6
4,407 by msardejani
Sat, 2016-10-01 12:55
Normal topic Problem readin .ccp4 map file
by jljbbc » Tue, 2011-05-03 11:29
4
4,416 by jljbbc
Mon, 2014-04-21 06:47
Normal topic RNA structure prediction
by emaghdam » Sat, 2014-02-08 01:30
4
4,420 by rmoretti
Mon, 2014-02-24 09:12
Normal topic Over-docking with FlexPepDock
by gw » Fri, 2012-07-20 13:10
5
4,441 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ddg dG_separate
by gw » Wed, 2012-08-22 11:25
5
4,480 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rotamers used in fixbb
by lanselibai » Thu, 2014-11-06 02:47
6
4,483 by lanselibai
Tue, 2014-11-11 15:28
Normal topic Up to date Vall database
by JadAbbass » Sat, 2013-06-29 10:35
3
4,490 by rmoretti
Tue, 2017-06-20 09:02
Normal topic docking in rosetta 3.3
by Ammu » Thu, 2012-03-15 12:03
6
4,524 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg_monomer and membrane proteins
by afmo » Tue, 2014-05-20 02:37
4
4,527 by afmo
Thu, 2014-05-22 01:19
Normal topic score to use for picking top docking solutions?
by sudhar » Tue, 2011-06-14 06:47
3
4,529 by weitzner
Mon, 2014-04-21 06:47
Normal topic homology modelling with DNA
by zadie1118 » Fri, 2012-09-28 06:35
4
4,577 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Abinitio.relax problem on centos
by krlitros87 » Wed, 2014-09-24 11:27
4
4,600 by jadolfbr
Tue, 2014-10-07 16:05
Normal topic Steric clashes in RNA minimization
by brianmlee » Tue, 2014-11-18 18:29
5
4,602 by brianmlee
Mon, 2014-11-24 19:40
Normal topic Enzdes: increase weight of energy term for steric clashes with ligand
by eyong123 » Wed, 2015-03-25 09:12
5
4,632 by rmoretti
Fri, 2015-04-24 12:02
Normal topic symmetrical membrane modeling
by rlwoltz » Tue, 2013-10-29 03:41
5
4,637 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic Antibody protocol: unusual antibodies, and chainbreaks
by Cyril Cros » Mon, 2014-07-21 17:03
5
4,667 by Cyril Cros
Tue, 2014-11-25 08:21
Normal topic Standalone alanine scanning protocol
by exchhattu » Thu, 2011-10-13 19:40
1
4,688 by smlewis
Mon, 2014-04-21 06:47
Normal topic protein docking failed
by albumns » Thu, 2012-11-08 02:59
6
4,709 by rmoretti
Mon, 2014-04-21 06:47
Normal topic matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302
by siciliu » Fri, 2014-03-21 17:51
5
4,751 by siciliu
Thu, 2014-04-10 09:50
Normal topic too many constraints result in no output pose
by Yao Wu » Sun, 2012-11-18 23:45
5
4,809 by smlewis
Mon, 2014-04-21 06:47
Normal topic Help with enzyme design
by lzx32 » Fri, 2011-04-08 22:29
6
4,820 by lzx32
Mon, 2014-04-21 06:47
Normal topic relax with resfile
by gw » Fri, 2011-08-05 10:57
3
4,833 by nannemdp
Mon, 2014-04-21 06:47
Normal topic rosetta.script segmentation fault
by felipet » Wed, 2013-10-02 10:41
4
4,838 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used?
by lanselibai » Tue, 2015-02-24 02:38
4
4,844 by lanselibai
Sun, 2015-03-01 15:00
Normal topic flexpep docking problem-----How to do with phosphorylation peptide?
by MajorID » Thu, 2011-06-02 00:37
4
4,857 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetry definition for coiled-coil dimer and trimer
by kszczepaniak » Fri, 2013-10-11 05:33
2
4,885 by kszczepaniak
Mon, 2014-04-21 06:48
Normal topic Comparative modeling stops with "no more batches to process... " / no output
by eskici » Tue, 2012-08-28 12:13
6
4,907 by eskici
Mon, 2014-04-21 06:47
Normal topic FloppyTail :How to specify range of design(mutation)
by syoifczeri » Mon, 2015-11-02 04:14
6
4,917 by syoifczeri
Sat, 2015-11-07 21:42
Normal topic ndruns and nstruct in fixbb
by Anonymous » Tue, 2012-08-07 01:52
5
4,918 by Anonymous
Mon, 2014-04-21 06:47
Normal topic the flexpepdock refinement and ab-initio
by tfliu » Mon, 2013-12-23 19:17
6
4,931 by tfliu
Mon, 2014-04-21 06:48
Normal topic Problems with ligand when running RosettaLigand
by Cat » Mon, 2013-05-20 15:58
5
4,943 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Relax a structure with >1 copy of a modified residue fails [Solved]
by franfdez » Wed, 2012-02-08 00:47
6
5,016 by franfdez
Mon, 2014-04-21 06:47
Normal topic Fragment files for membrane_abinitio application
by sumukh21 » Sun, 2011-02-13 20:34
7
5,022 by yarovoy
Mon, 2014-04-21 06:47
Normal topic deltaG calculations
by Prasanth Kumar » Wed, 2013-05-15 07:06
3
5,066 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Write one's own constraint type
by djpittdj » Thu, 2012-11-08 12:29
7
5,066 by smlewis
Mon, 2014-04-21 06:47
Normal topic Results of enzyme_design not consistent with Resfile
by yogeshkd » Thu, 2013-02-14 15:56
6
5,077 by yogeshkd
Mon, 2014-04-21 06:47
Normal topic the ddg of mutant is same as the wt
by deepanshuiitb » Wed, 2015-03-04 11:56
6
5,081 by jadolfbr
Tue, 2015-04-07 10:50
Normal topic suppress pdb output from backrub
by attesor » Mon, 2014-10-27 11:16
7
5,122 by rmoretti
Mon, 2014-11-03 15:47
Normal topic variable length fragments for Ab initio
by attesor » Wed, 2015-07-01 06:13
7
5,148 by rmoretti
Tue, 2015-08-18 16:47
Normal topic RosettaLigand - strange score behavior
by Gerdes » Mon, 2014-02-03 02:24
6
5,166 by Gerdes
Fri, 2014-02-07 06:48
Normal topic fix the left part doesn't work
by albumns » Wed, 2012-11-07 00:02
9
5,191 by albumns
Mon, 2014-04-21 06:47
Normal topic PDB format for RosettaDNA
by brspurri » Thu, 2013-05-30 11:21
5
5,197 by brspurri
Mon, 2014-04-21 06:47
Normal topic If "clustering.py" can be used for PDBs contain two chains?
by lanselibai » Wed, 2014-11-05 06:05
7
5,205 by lanselibai
Tue, 2014-12-02 09:43
Normal topic RosettaVIP: ERROR: seqpos <= size()
by Anonymous » Thu, 2012-07-26 07:30
5
5,243 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Rosetta dock irmsd
by Pernille » Sun, 2015-04-26 13:51
5
5,267 by rmoretti
Mon, 2015-10-12 15:10
Normal topic ddg_monomer: what is the meaning of "total score" and "score"?
by lanselibai » Tue, 2015-01-13 14:49
4
5,268 by rmoretti
Thu, 2015-04-16 11:23
Normal topic Including waters in RosettaCM
by ajkal » Thu, 2017-04-27 11:59
9
5,292 by rpavlov
Tue, 2017-06-06 11:45
Normal topic CS-HM-Rosetta
by pwurm » Thu, 2013-03-07 12:56
6
5,343 by Marius1987
Fri, 2016-02-05 07:20
Normal topic How to find cluster core structure?
by assignfit » Thu, 2012-03-29 20:35
7
5,382 by attesor
Wed, 2017-06-14 07:32
Normal topic where is pdb2vall.py
by tevang » Thu, 2013-01-24 13:35
7
5,413 by dktest
Mon, 2014-04-21 06:47
Normal topic rosetta protein protein docking start up
by vk » Fri, 2011-06-24 09:01
5
5,440 by smlewis
Mon, 2014-04-21 06:47
Normal topic extract silent error - tag mismatch
by shrutikhare » Thu, 2014-04-03 00:13
5
5,460 by rmoretti
Mon, 2014-04-21 10:47
Normal topic Enzdes score file discrepancy between generated pdb and scores.out
by eyong123 » Wed, 2015-03-25 08:52
6
5,463 by eyong123
Mon, 2015-06-29 04:44
Normal topic Enzyme design with variable CST blocks possible?
by petrikigor » Thu, 2011-10-06 11:24
6
5,500 by petrikigor
Mon, 2014-04-21 06:47
Normal topic P-P docking with suitable constraint type
by Yao Wu » Tue, 2012-11-13 18:03
5
5,513 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ab inito memberane(error in alignblast.pl)
by kingljy » Tue, 2011-05-03 23:41
6
5,524 by karthishanmugam
Mon, 2014-04-21 06:47
Normal topic ligand docking, how to combine some silent.out files into a silent_all.out file
by Ryhon Wang » Fri, 2013-12-06 01:53
6
5,614 by rmoretti
Wed, 2017-01-11 12:53
Normal topic About scorefunction.
by Run » Mon, 2013-09-09 23:08
7
5,619 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Abinitio Relax Error from -kill_hairpins
by attesor » Tue, 2014-10-28 05:33
7
5,626 by rmoretti
Tue, 2014-11-04 10:28
Normal topic Surface Docking Application Crash
by dkozuch » Sat, 2017-09-02 18:32
12
5,633 by Anpu
Tue, 2018-09-25 19:06
Normal topic Using MoveMap within Relax Application?
by m_grisewood » Mon, 2012-08-13 12:21
5
5,647 by m_grisewood
Mon, 2014-04-21 06:47
Normal topic Dimer of dimers
by smiruthi » Fri, 2011-04-15 10:41
4
5,652 by IAndre
Mon, 2014-04-21 06:47
Normal topic Abinitio (3.4) Error: no fragment to compute secondary structure
by skovacs » Tue, 2012-09-18 13:49
6
5,688 by skovacs
Mon, 2014-04-21 06:47
Normal topic RosettaCM Biological Assembly
by jrcf » Mon, 2015-10-26 11:01
5
5,696 by rmoretti
Tue, 2015-11-24 15:30
Normal topic Conformers in EnzDes
by JorickF » Fri, 2015-03-06 04:41
5
5,712 by rmoretti
Tue, 2015-03-31 08:56
Normal topic How can I prevent coordinates shift when using "loopmodel.linuxgccrelease"?
by lanselibai » Tue, 2014-11-04 14:56
7
5,750 by lanselibai
Wed, 2014-11-12 11:17
Normal topic RosettaRemodel can not work now?
by myputer » Tue, 2013-08-13 16:56
7
5,792 by rmoretti
Mon, 2014-04-21 06:48
Normal topic analysis of clustering
by loris.moretti » Thu, 2012-04-19 02:52
3
5,850 by rmoretti
Mon, 2014-04-21 06:47
Normal topic mover "RepackMinimize" does not support chains > 2?
by jarod » Mon, 2013-05-20 02:17
6
5,851 by jarod
Mon, 2014-04-21 06:47
Normal topic problem creating lips4 file using run_lips.pl
by adva » Sun, 2015-02-15 06:22
5
5,862 by linucks
Mon, 2016-06-20 12:02
Normal topic [SOLVED]core.io.silent: [ WARNING ] ...
by fred » Wed, 2011-10-05 07:38
8
5,904 by fred
Mon, 2014-04-21 06:47
Normal topic Why do non proten ligands get a very high score in kinematic loop modeling/ in general?
by a_s_a » Wed, 2011-06-15 00:03
8
5,921 by a_s_a
Mon, 2014-04-21 06:47
Normal topic segmentation fault after core.kinematics.FoldTree in homology modeling
by pdbb » Mon, 2012-10-08 14:27
7
5,925 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Problem about energy score
by tfliu » Tue, 2013-11-05 02:09
7
5,948 by Ora Schueler-Furman
Mon, 2014-04-21 06:48
Normal topic Distinctions between InterfaceAnalyzer and RosettaScript
by achambe » Wed, 2015-06-17 10:14
6
5,982 by rmoretti
Wed, 2015-09-02 12:43
Normal topic protein structure prediction using relax -- high-powered jobs
by rfieldhouse » Mon, 2011-05-30 18:29
7
5,993 by dimaio
Mon, 2014-04-21 06:47
Normal topic Incorrect Jump being set in RosettaScripts docking mover
by weehee » Fri, 2012-06-08 10:23
6
6,079 by rmoretti
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - Applications