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Rosetta 3 - Applications
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AbinitioRelax with native fragments by ks » Mon, 2016-09-05 03:03 |
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4,149 |
by ks Mon, 2016-09-12 03:14 |
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Disulfide prediction from primary sequence by zcrook » Wed, 2014-11-12 14:44 |
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4,160 |
by zcrook Tue, 2014-11-25 10:27 |
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"Problem in calculating overlap between atoms" error occurred in Point Mutant Scan application by xfliu » Thu, 2012-06-21 09:07 |
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4,162 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta relax problem by jingwei xu » Wed, 2016-03-09 21:41 |
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4,164 |
by jingwei xu Wed, 2016-05-04 23:28 |
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extract_pdb application parse error with silent file by staciekim » Tue, 2017-08-22 12:39 |
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4,167 |
by rmoretti Thu, 2017-08-24 08:19 |
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RosettaAntibody by mpendleton » Mon, 2011-04-04 10:27 |
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4,175 |
by jianqing Mon, 2014-04-21 06:47 |
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fixbb algorithm reference? by tylerborrman » Wed, 2015-09-23 10:20 |
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4,181 |
by tylerborrman Mon, 2015-09-28 09:30 |
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Error src/core/scoring/MembraneTopology.cc line: 139 by Daniel Hall » Thu, 2017-07-13 04:58 |
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4,191 |
by rmoretti Tue, 2017-07-18 09:00 |
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ligand_docking_analysis by Prasanth Kumar » Thu, 2013-05-09 23:51 |
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4,192 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking flags by AmelieH » Thu, 2014-11-13 08:46 |
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4,193 |
by AmelieH Wed, 2014-11-19 11:26 |
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Make error during installation of updated ncbi-blast-2.9.0+-src plus error with nr-database by Corvin » Tue, 2019-10-01 02:04 |
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4,196 |
by Corvin Tue, 2019-10-15 01:12 |
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Running Rosetta CM Hybridize step errors with: Scorefunction not set up for nonideal/Cartesian scoring by brspurri » Wed, 2017-03-29 13:19 |
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4,215 |
by matteoferla Mon, 2021-07-19 06:13 |
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clean_pdb.py of Rosetta VS cleanATOM of PyRosetta by lanselibai » Wed, 2014-09-24 03:02 |
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4,224 |
by lanselibai Wed, 2014-09-24 13:21 |
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Using Rosetta Docking for nucleic acids by Adrien Guilhot » Thu, 2011-04-28 06:16 |
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4,234 |
by Adrien Guilhot Mon, 2014-04-21 06:47 |
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Backrub Params Files by protos_heis » Tue, 2012-09-18 06:15 |
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4,236 |
by protos_heis Mon, 2014-04-21 06:47 |
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minirosetta: weird behavior by fred » Wed, 2014-01-22 05:57 |
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4,248 |
by fred Mon, 2014-04-21 06:48 |
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Error while running RosettaLigand by Ryhon Wang » Tue, 2013-07-30 02:51 |
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4,255 |
by Ryhon Wang Mon, 2014-04-21 06:48 |
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ddg with ligands by bhaines1 » Mon, 2011-12-05 14:32 |
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4,263 |
by rmoretti Mon, 2014-04-21 06:47 |
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How do you use two patches simulataneously with ab initio folding? by smiruthi » Wed, 2011-12-21 15:24 |
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4,287 |
by wangyr Mon, 2014-04-21 06:47 |
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make fragment by zadie1118 » Thu, 2012-08-30 07:45 |
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4,295 |
by smlewis Mon, 2014-04-21 06:47 |
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Missing common atom definitions in constraints by ic3reyes » Sat, 2011-06-11 13:09 |
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4,296 |
by smlewis Mon, 2014-04-21 06:47 |
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Does linker modeling exist? by aroop » Wed, 2012-02-22 07:34 |
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4,338 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer consumes massive RAM by cossio » Fri, 2018-03-09 17:02 |
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4,341 |
by rmoretti Mon, 2018-03-19 12:12 |
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-score_app:linmin flag not working by fglaser » Tue, 2011-03-01 06:04 |
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4,349 |
by smlewis Mon, 2014-04-21 06:47 |
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Line search failed even after resetting Hessian by Loki01 » Wed, 2017-12-13 16:52 |
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4,354 |
by Loki01 Thu, 2018-02-15 13:54 |
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Error while reading in silent file by rweisse » Mon, 2015-04-20 00:31 |
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4,382 |
by rmoretti Thu, 2015-04-30 16:46 |
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Multiple ligands in enzyme design application by yogeshkd » Mon, 2013-02-11 10:13 |
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4,395 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Loop modelling before peptide docking by wsgosal » Tue, 2013-10-01 07:24 |
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4,410 |
by wsgosal Mon, 2014-04-21 06:48 |
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How to only constructure the tail conformation when using "FloppyTail.linuxgccrelease"? by lanselibai » Mon, 2014-10-13 10:26 |
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4,413 |
by lanselibai Wed, 2014-10-15 03:52 |
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Why is proline hydroxylated？ by kwonglynn » Tue, 2013-06-25 02:38 |
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4,432 |
by rmoretti Mon, 2014-04-21 06:48 |
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Converting -patch replonly residues to original sequence by subha » Mon, 2017-06-26 13:39 |
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4,433 |
by smlewis Tue, 2017-07-04 15:42 |
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score_jd2.mpi.linuxgccrelease failed by fred » Wed, 2014-03-26 13:54 |
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4,434 |
by fred Tue, 2014-04-01 08:24 |
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How to estimate the effect of a mutation on the binding energy? by ltrabuco » Tue, 2011-02-15 08:02 |
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4,437 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Abinitio doesn't run but does not give output or error by Irving » Fri, 2016-10-28 10:04 |
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4,450 |
by rmoretti Mon, 2017-01-23 08:52 |
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Problem with hotspot constraints. by jarek » Wed, 2012-10-17 03:22 |
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4,468 |
by xfliu Mon, 2014-04-21 06:47 |
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SymDock for docking only the ligand? by ast » Mon, 2013-06-17 09:53 |
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4,483 |
by rmoretti Mon, 2014-04-21 06:48 |
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Syntax for python-based (.py) command line on cluster by lanselibai » Fri, 2014-11-14 09:32 |
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4,497 |
by lanselibai Thu, 2014-11-20 02:15 |
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SnugDocking a VHH:antigen complex possible? by David Weis » Thu, 2017-02-16 05:57 |
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4,525 |
by rmoretti Thu, 2017-07-06 13:00 |
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SEWING and motif file generation by rbjacob » Thu, 2018-07-12 07:28 |
10 |
4,527 |
by zhangying1990 Tue, 2019-06-04 18:04 |
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fixbb with symmetry error by Prasanth Kumar » Sun, 2014-01-26 10:56 |
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4,562 |
by Prasanth Kumar Mon, 2014-04-21 06:48 |
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ab initio protein prediction using homologs by justin » Mon, 2012-02-13 07:52 |
5 |
4,579 |
by justin Mon, 2014-04-21 06:47 |
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Unable to run Rosetta LoopModeling application by BDBorrillo » Tue, 2011-07-19 14:06 |
2 |
4,598 |
by BDBorrillo Mon, 2014-04-21 06:47 |
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flexpep docking problem by michael_luntan » Mon, 2011-04-18 17:15 |
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4,598 |
by michael_luntan Mon, 2014-04-21 06:47 |
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Relax with protein+complex by Prasanth Kumar » Wed, 2013-05-08 23:16 |
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4,603 |
by Prasanth Kumar Mon, 2014-04-21 06:47 |
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Sequence design with mixed fixbb-relax protocol by kszczepaniak » Thu, 2013-10-03 08:11 |
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4,605 |
by fede Wed, 2020-09-23 11:24 |
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RosettaLigand: How to score native pose in protein-ligand docking experiment? by Ryhon Wang » Tue, 2015-11-10 01:30 |
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4,614 |
by Ryhon Wang Mon, 2016-01-04 19:59 |
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Pmut_scan with symmetry by felipet » Thu, 2015-02-05 08:53 |
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4,637 |
by felipet Wed, 2015-02-11 05:13 |
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Problem readin .ccp4 map file by jljbbc » Tue, 2011-05-03 11:29 |
4 |
4,658 |
by jljbbc Mon, 2014-04-21 06:47 |
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Over-docking with FlexPepDock by gw » Fri, 2012-07-20 13:10 |
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4,672 |
by rmoretti Mon, 2014-04-21 06:47 |
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RNA structure prediction by emaghdam » Sat, 2014-02-08 01:30 |
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4,679 |
by rmoretti Mon, 2014-02-24 09:12 |
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rna structure prediction by cbala » Thu, 2011-04-14 07:42 |
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4,684 |
by mkoohim Mon, 2014-04-21 06:47 |
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loop modeling during enzyme design? by lzx32 » Wed, 2011-11-16 00:30 |
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4,694 |
by lzx32 Mon, 2014-04-21 06:47 |
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scoring of beta sandwich protein by attesor » Mon, 2014-11-17 08:24 |
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4,716 |
by rmoretti Thu, 2014-11-20 10:46 |
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symmetric design in the presence of a nonsymmetric ligand by msardejani » Fri, 2016-09-30 15:17 |
6 |
4,735 |
by msardejani Sat, 2016-10-01 12:55 |
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ddg_monomer and membrane proteins by afmo » Tue, 2014-05-20 02:37 |
4 |
4,737 |
by afmo Thu, 2014-05-22 01:19 |
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SnugDock - What protocol should I use? by dfcoelho » Tue, 2018-11-27 07:32 |
8 |
4,737 |
by dfcoelho Wed, 2018-11-28 08:07 |
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Up to date Vall database by JadAbbass » Sat, 2013-06-29 10:35 |
3 |
4,761 |
by rmoretti Tue, 2017-06-20 09:02 |
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homology modelling with DNA by zadie1118 » Fri, 2012-09-28 06:35 |
4 |
4,772 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rotamers used in fixbb by lanselibai » Thu, 2014-11-06 02:47 |
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4,799 |
by lanselibai Tue, 2014-11-11 15:28 |
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how to fix the ATP HETATM by using movemap or constraint file? by ziqi1234 » Mon, 2017-11-20 06:43 |
9 |
4,810 |
by ziqi1234 Wed, 2017-11-22 06:21 |
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ddg dG_separate by gw » Wed, 2012-08-22 11:25 |
5 |
4,812 |
by smlewis Mon, 2014-04-21 06:47 |
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score to use for picking top docking solutions? by sudhar » Tue, 2011-06-14 06:47 |
3 |
4,824 |
by weitzner Mon, 2014-04-21 06:47 |
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docking in rosetta 3.3 by Ammu » Thu, 2012-03-15 12:03 |
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4,826 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio.relax problem on centos by krlitros87 » Wed, 2014-09-24 11:27 |
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4,832 |
by jadolfbr Tue, 2014-10-07 16:05 |
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Standalone alanine scanning protocol by exchhattu » Thu, 2011-10-13 19:40 |
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4,850 |
by smlewis Mon, 2014-04-21 06:47 |
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Segmentation fault (core dumped) in rosetta_scripts.default.linuxgccrelease after blueprint file reading by Corvin » Tue, 2020-06-30 00:36 |
12 |
4,883 |
by Corvin Tue, 2020-11-10 01:22 |
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Steric clashes in RNA minimization by brianmlee » Tue, 2014-11-18 18:29 |
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4,891 |
by brianmlee Mon, 2014-11-24 19:40 |
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Noncanonical amino acids by wsgosal » Tue, 2014-03-18 05:29 |
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4,893 |
by e3lm Thu, 2022-05-26 12:51 |
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Enzdes: increase weight of energy term for steric clashes with ligand by eyong123 » Wed, 2015-03-25 09:12 |
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4,901 |
by rmoretti Fri, 2015-04-24 12:02 |
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Antibody protocol: unusual antibodies, and chainbreaks by Cyril Cros » Mon, 2014-07-21 17:03 |
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4,944 |
by Cyril Cros Tue, 2014-11-25 08:21 |
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symmetrical membrane modeling by rlwoltz » Tue, 2013-10-29 03:41 |
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4,964 |
by jadolfbr Mon, 2014-04-21 06:48 |
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protein docking failed by albumns » Thu, 2012-11-08 02:59 |
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5,007 |
by rmoretti Mon, 2014-04-21 06:47 |
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matdes_design: ERROR]EXCN_utility_exit has been thrown from: src/core/io/silent/SilentFileData.cc line: 302 by siciliu » Fri, 2014-03-21 17:51 |
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5,022 |
by siciliu Thu, 2014-04-10 09:50 |
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Symmetry definition for coiled-coil dimer and trimer by kszczepaniak » Fri, 2013-10-11 05:33 |
2 |
5,053 |
by kszczepaniak Mon, 2014-04-21 06:48 |
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too many constraints result in no output pose by Yao Wu » Sun, 2012-11-18 23:45 |
5 |
5,059 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg_monomer: How the ddG is actually calculated based on the 50 trajectories? What scorefunction is used? by lanselibai » Tue, 2015-02-24 02:38 |
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5,114 |
by lanselibai Sun, 2015-03-01 15:00 |
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rosetta.script segmentation fault by felipet » Wed, 2013-10-02 10:41 |
4 |
5,115 |
by jadolfbr Mon, 2014-04-21 06:48 |
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relax with resfile by gw » Fri, 2011-08-05 10:57 |
3 |
5,117 |
by nannemdp Mon, 2014-04-21 06:47 |
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flexpep docking problem-----How to do with phosphorylation peptide? by MajorID » Thu, 2011-06-02 00:37 |
4 |
5,137 |
by rmoretti Mon, 2014-04-21 06:47 |
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Help with enzyme design by lzx32 » Fri, 2011-04-08 22:29 |
6 |
5,154 |
by lzx32 Mon, 2014-04-21 06:47 |
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ndruns and nstruct in fixbb by Anonymous » Tue, 2012-08-07 01:52 |
5 |
5,156 |
by Anonymous Mon, 2014-04-21 06:47 |
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Comparative modeling stops with "no more batches to process... " / no output by eskici » Tue, 2012-08-28 12:13 |
6 |
5,171 |
by eskici Mon, 2014-04-21 06:47 |
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the flexpepdock refinement and ab-initio by tfliu » Mon, 2013-12-23 19:17 |
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5,199 |
by tfliu Mon, 2014-04-21 06:48 |
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FloppyTail :How to specify range of design(mutation) by syoifczeri » Mon, 2015-11-02 04:14 |
6 |
5,205 |
by syoifczeri Sat, 2015-11-07 21:42 |
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Problems with ligand when running RosettaLigand by Cat » Mon, 2013-05-20 15:58 |
5 |
5,231 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Relax a structure with >1 copy of a modified residue fails [Solved] by franfdez » Wed, 2012-02-08 00:47 |
6 |
5,280 |
by franfdez Mon, 2014-04-21 06:47 |
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deltaG calculations by Prasanth Kumar » Wed, 2013-05-15 07:06 |
3 |
5,338 |
by rmoretti Mon, 2014-04-21 06:47 |
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Results of enzyme_design not consistent with Resfile by yogeshkd » Thu, 2013-02-14 15:56 |
6 |
5,375 |
by yogeshkd Mon, 2014-04-21 06:47 |
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Write one's own constraint type by djpittdj » Thu, 2012-11-08 12:29 |
7 |
5,393 |
by smlewis Mon, 2014-04-21 06:47 |
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Fragment files for membrane_abinitio application by sumukh21 » Sun, 2011-02-13 20:34 |
7 |
5,400 |
by yarovoy Mon, 2014-04-21 06:47 |
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the ddg of mutant is same as the wt by deepanshuiitb » Wed, 2015-03-04 11:56 |
6 |
5,407 |
by jadolfbr Tue, 2015-04-07 10:50 |
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PDB format for RosettaDNA by brspurri » Thu, 2013-05-30 11:21 |
5 |
5,445 |
by brspurri Mon, 2014-04-21 06:47 |
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RosettaVIP: ERROR: seqpos <= size() by Anonymous » Thu, 2012-07-26 07:30 |
5 |
5,507 |
by Anonymous Mon, 2014-04-21 06:47 |
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suppress pdb output from backrub by attesor » Mon, 2014-10-27 11:16 |
7 |
5,509 |
by rmoretti Mon, 2014-11-03 15:47 |
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variable length fragments for Ab initio by attesor » Wed, 2015-07-01 06:13 |
7 |
5,513 |
by rmoretti Tue, 2015-08-18 16:47 |
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RosettaLigand - strange score behavior by Gerdes » Mon, 2014-02-03 02:24 |
6 |
5,513 |
by Gerdes Fri, 2014-02-07 06:48 |
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fix the left part doesn't work by albumns » Wed, 2012-11-07 00:02 |
9 |
5,548 |
by albumns Mon, 2014-04-21 06:47 |
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ddg_monomer: what is the meaning of "total score" and "score"? by lanselibai » Tue, 2015-01-13 14:49 |
4 |
5,549 |
by rmoretti Thu, 2015-04-16 11:23 |
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Rosetta dock irmsd by Pernille » Sun, 2015-04-26 13:51 |
5 |
5,580 |
by rmoretti Mon, 2015-10-12 15:10 |
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If "clustering.py" can be used for PDBs contain two chains? by lanselibai » Wed, 2014-11-05 06:05 |
7 |
5,629 |
by lanselibai Tue, 2014-12-02 09:43 |
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