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Topic / Topic starter | Replies | Views | Last post | |
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Could not open file /Rosetta/rosetta_bin_linux_2020.08.61146_bundle/main/database/citations/rosetta_citations by yliang20 » Wed, 2022-06-15 11:26 |
2 |
1,586 |
by yliang20 Wed, 2022-06-15 13:46 |
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docking with capping groups by xavierfradera » Sun, 2018-11-04 16:17 |
1 |
1,584 |
by maral.adeli-kou... Wed, 2020-01-22 12:41 |
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Error when trying docking protocol with different ligand by scyphs » Wed, 2020-08-05 04:37 |
2 |
1,581 |
by scyphs Mon, 2020-08-10 08:09 |
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Disulfide Bonds in Loop Modeling by code_Monkey » Mon, 2021-05-03 08:27 |
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1,579 |
by code_Monkey Thu, 2021-05-06 07:14 |
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loop design for Conformational bias by dhirajks » Thu, 2019-05-09 21:22 |
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1,578 |
by jadolfbr Fri, 2019-05-10 07:53 |
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Finding lowest energy structure among generated structures by Marius1987 » Sun, 2016-04-10 11:38 |
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1,572 |
by Marius1987 Sun, 2016-04-10 12:09 |
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Question on restraining receptor symmetry when docking ligand by subha » Fri, 2018-07-06 21:59 |
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1,562 |
by rmoretti Fri, 2018-08-03 08:16 |
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how to know the precedure of solving a actural bio problem? like interface design? by qq7678500549 » Thu, 2020-08-06 18:45 |
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1,562 |
by qq7678500549 Sun, 2020-08-09 18:59 |
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ProteinInterfaceMS by rbjacob » Wed, 2018-10-24 11:31 |
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1,550 |
by rmoretti Wed, 2018-11-21 15:10 |
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How to add additional rounds of design and optimization in Rosetta scripts? by Nicole Deng » Tue, 2020-11-03 19:05 |
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1,544 |
by Nicole Deng Thu, 2020-11-05 03:04 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Mon, 2016-01-04 11:26 |
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1,541 |
by achambe Mon, 2016-01-04 11:26 |
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Membrane ab-initio modelling of a beta-strand by hzhekova » Mon, 2019-06-10 14:22 |
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1,541 |
by rmoretti Mon, 2019-06-24 14:39 |
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How do I change the default Compiler for Rosetta? by pagumaaaaa » Wed, 2022-03-16 00:23 |
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1,539 |
by pagumaaaaa Thu, 2022-03-24 22:40 |
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Predicting the part of protein strcutrue by ksy141 » Tue, 2018-10-16 11:47 |
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1,538 |
by jadolfbr Fri, 2018-11-09 14:28 |
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"install_dependencies.pl" script: an optimization of HDD space during nr-pfilt data extracting and formatting stage by Corvin » Thu, 2019-10-10 02:20 |
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1,532 |
by danpf Thu, 2019-10-10 09:55 |
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Protein Ensemble RosettaLigand Docking by sam_dc » Fri, 2021-03-26 10:18 |
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1,527 |
by sam_dc Fri, 2021-03-26 12:04 |
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kcenters_clustering_of_fragments by bjharris » Mon, 2019-07-01 16:16 |
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1,523 |
by bjharris Wed, 2020-07-01 23:25 |
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GeneralizedKIC loop closure error by chenna » Sat, 2021-04-10 00:21 |
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1,520 |
by chenna Mon, 2021-04-12 22:08 |
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remodel: what are the exact meanings of notations for secondary structure? by lanselibai » Sat, 2015-01-17 04:53 |
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1,520 |
by lanselibai Sat, 2015-01-17 07:57 |
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Docking protein complexes when constrained by oligomer symmetry by msk » Tue, 2014-06-03 11:09 |
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1,516 |
by msk Tue, 2014-06-03 11:09 |
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PDB moves after relaxing by Hr13b » Fri, 2018-07-27 13:12 |
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1,510 |
by smlewis Fri, 2018-07-27 13:32 |
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Relax evaluates protein-DNA complexes? by pablogalazdavison » Thu, 2022-05-12 12:05 |
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1,507 |
by pablogalazdavison Fri, 2022-05-20 12:27 |
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RosettaCM by jlawrie » Fri, 2020-08-14 14:09 |
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1,506 |
by jlawrie Fri, 2020-08-14 14:09 |
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D-amino acids tripeptide docking. by sam_dc » Sat, 2021-07-03 08:48 |
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1,501 |
by vmulligan Tue, 2021-07-06 08:27 |
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debug rosetta_scripts FunFolDes run by tatsiana.bylund » Sun, 2019-08-18 23:17 |
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1,501 |
by neelamraju.srid... Wed, 2020-11-18 05:47 |
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hybrid approach - comparative and ab initio modelling by eprates » Wed, 2019-03-20 11:58 |
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1,499 |
by rmoretti Fri, 2019-03-29 09:45 |
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protein interction design by Negarsardar » Wed, 2019-05-15 12:01 |
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1,493 |
by rmoretti Wed, 2019-07-10 09:24 |
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FASTA for Octopus by Smbat » Wed, 2020-09-16 05:40 |
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1,492 |
by rmoretti Wed, 2020-09-16 22:11 |
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input file for loop modeling by Negarsardar » Tue, 2019-04-16 10:21 |
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1,491 |
by rmoretti Tue, 2019-04-16 11:07 |
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Element 'trRosettaProtocol': This element is not expected. by csaylan » Tue, 2021-04-20 14:21 |
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1,487 |
by csaylan Tue, 2021-04-20 16:13 |
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Help to understand docking results by rtorquato » Fri, 2022-11-25 12:05 |
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1,483 |
by rtorquato Fri, 2022-11-25 12:05 |
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Can I use rosetta binaries built in one linux system to another linux system? by Danielsebas » Wed, 2019-09-18 06:49 |
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1,483 |
by rmoretti Wed, 2019-09-18 10:36 |
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remodel ERROR: unrecognized mm_atom_type_name RGU by daniloboskovic » Sat, 2020-02-22 11:55 |
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1,482 |
by daniloboskovic Tue, 2020-02-25 08:28 |
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Error with RosettaAntibodyDesign when running antibody_designer.linuxgccrelease by bdzhh » Tue, 2019-09-17 17:02 |
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1,476 |
by jadolfbr Thu, 2019-09-19 08:53 |
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Symmetric assembly and output reconstruction by felipet » Wed, 2014-07-02 10:23 |
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1,476 |
by felipet Wed, 2014-07-02 10:23 |
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antibody protocol fails by hamedkhakzad » Mon, 2019-08-19 07:43 |
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1,467 |
by smlewis Tue, 2019-10-22 09:45 |
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denovo modelling on a virus-coat protein dimer by aseem121 » Wed, 2019-10-16 06:55 |
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1,466 |
by danpf Wed, 2019-10-16 13:03 |
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Segmentation Fault in Rosetta CM Hybridize by yliang20 » Mon, 2022-06-06 17:25 |
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1,465 |
by yliang20 Tue, 2022-06-07 08:36 |
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The energy terms in InterfaceAnalyzer by Sunyp_IM » Tue, 2021-11-02 18:43 |
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1,464 |
by zivben Sat, 2021-11-13 04:49 |
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can remodel add loops in one chain in multichain PDB structure? by ksteczk » Fri, 2020-05-01 06:26 |
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1,457 |
by matteoferla Mon, 2020-05-04 01:43 |
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protein-ligand docking rescoring with interfaceAnalyzer by syntekabio2019 » Sat, 2020-12-19 03:59 |
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1,456 |
by syntekabio2019 Sun, 2020-12-20 21:10 |
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The relax qustion of Rosetta VIP by asbelx » Mon, 2019-06-10 07:52 |
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1,456 |
by rmoretti Mon, 2019-06-24 14:42 |
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AddHelixSequenceConstraints Mover2 by Negarsardar » Sat, 2019-06-01 01:54 |
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1,456 |
by vmulligan Thu, 2019-06-13 15:01 |
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pmut_scan_parallel by G Mustafa » Wed, 2018-10-17 05:41 |
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1,451 |
by G Mustafa Wed, 2018-10-17 05:41 |
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r_frag_quality by ii_cnr » Mon, 2021-04-12 03:06 |
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1,451 |
by ii_cnr Mon, 2021-04-12 23:44 |
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PlaceStub filter by a-eatemadi@razi... » Wed, 2017-11-15 04:19 |
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1,441 |
by a-eatemadi@razi... Mon, 2017-12-04 23:52 |
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Modelling at defined pH - for pmutscan - pH:mode not working by cagfa1 » Tue, 2022-03-15 04:05 |
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1,440 |
by Rituparna_Saman... Wed, 2022-03-23 11:21 |
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How to analyse multiple silent files from "Abinitiorelax" output to find best models? by Danielsebas » Tue, 2019-09-10 10:01 |
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1,438 |
by smlewis Mon, 2019-09-16 12:22 |
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wallpaper symmetry definition file by aaj » Fri, 2016-02-26 08:40 |
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1,438 |
by aaj Fri, 2016-02-26 08:40 |
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Generalized KIC loop closure affects downstream residues without perturbations by chenna » Mon, 2021-04-26 02:16 |
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1,430 |
by chenna Wed, 2021-04-28 07:18 |
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antibody H3 modelling protocol for nanobody gives "[ ERROR ] Inaccurate G!" messages by AlfredoKCL » Sun, 2021-02-28 16:42 |
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1,426 |
by AlfredoKCL Mon, 2021-03-01 04:07 |
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FloppyTail as a rosettascripts file by tiagogomes89 » Mon, 2015-01-19 02:45 |
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1,421 |
by tiagogomes89 Mon, 2015-01-19 02:45 |
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cartesian_ddg crashes when the mutfile contains multiple mutations to non-canonical residues by ValentinaSora » Sun, 2020-05-24 12:32 |
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1,420 |
by ValentinaSora Sun, 2020-05-24 12:32 |
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Adding positional restraints to pure RNA system in DRRAFTER and rna_denovo by zharmad » Fri, 2019-08-23 01:16 |
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1,416 |
by everyday847 Fri, 2019-08-23 04:08 |
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algebric library for rosetta by yigallah » Mon, 2014-12-15 08:46 |
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1,415 |
by yigallah Mon, 2014-12-15 08:46 |
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Error from clean_pdb.py by code_Monkey » Mon, 2021-03-01 17:00 |
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1,410 |
by code_Monkey Thu, 2021-03-04 12:14 |
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BuildPeptide - Using Phosphorylated and Sulfated Tyrosine by jlawrie » Thu, 2020-09-03 14:29 |
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1,410 |
by cryosky Mon, 2021-03-01 21:37 |
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EMERALD method not working, Rosetta version not available for download by seba » Thu, 2023-05-04 08:14 |
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1,407 |
by rmoretti Mon, 2023-07-10 08:57 |
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fixing sequence during grafting in antibody_designer by COM » Fri, 2020-01-24 11:38 |
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1,405 |
by jadolfbr Tue, 2020-01-28 09:13 |
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crazy loopmodel: linear output pdbs by fred » Wed, 2014-12-03 12:27 |
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1,404 |
by fred Wed, 2014-12-03 12:28 |
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Do partner1 and partner2 in mover BackrubDD mean chain1 and chain2 respectively? by johnnytam100 » Fri, 2019-08-23 21:10 |
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1,399 |
by rmoretti Mon, 2019-08-26 12:03 |
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get an increased energy after energy minimization when using different score functions for repacking and energy minimization by xinmiaohe » Fri, 2020-02-07 11:59 |
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1,397 |
by xinmiaohe Fri, 2020-02-07 13:52 |
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/database folder after running "install_dependencies.pl" size 657 GB? by Danielsebas » Tue, 2019-09-03 03:32 |
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1,394 |
by danpf Tue, 2019-09-03 10:15 |
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Issue with Rosetta LinkResidues Script by adityapadhi » Wed, 2019-11-20 22:00 |
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1,390 |
by JackMaguire Fri, 2019-11-22 13:45 |
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DNA-protein docking by ksteczk » Sat, 2020-04-11 11:23 |
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1,379 |
by ksteczk Sat, 2020-04-11 11:23 |
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PDB file name too long to be handled by file system by dave » Thu, 2019-08-08 03:10 |
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1,378 |
by rmoretti Mon, 2019-08-26 12:17 |
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rosetta_cm segfault by browns02 » Fri, 2021-07-09 13:35 |
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1,378 |
by rmoretti Fri, 2021-07-09 15:05 |
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Protein-Protein Docking or Comparative Modeling by Morrian_Lynn » Wed, 2020-01-29 19:01 |
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1,371 |
by danpf Fri, 2020-02-21 18:23 |
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Symmetry definition question by mrconde96 » Sun, 2022-10-02 05:34 |
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1,359 |
by mrconde96 Sun, 2022-10-02 05:34 |
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Robetta ab initio - TrRosetta for membrane proteins by benhardy » Wed, 2020-09-30 08:42 |
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1,355 |
by benhardy Wed, 2020-09-30 08:42 |
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Using abinition to predict a new (previously unsolved) structure. by ac.research » Mon, 2017-01-09 00:59 |
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1,351 |
by ac.research Mon, 2017-01-09 00:59 |
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Warning: Fold tree is not set properly for density scoring by ahansel » Mon, 2020-07-13 10:50 |
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1,349 |
by danpf Tue, 2020-07-14 10:27 |
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[Solved] RosettaAntibody3 - Grafting step is failing to detect H3 from the input sequence by brspurri » Mon, 2021-01-04 16:46 |
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1,347 |
by brspurri Mon, 2021-01-18 18:14 |
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The difference between the H1 regions of modeled camelid antibody and the crystal structure. by Sunyp_IM » Sun, 2020-06-07 02:34 |
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1,346 |
by nannemdp Sun, 2020-06-07 08:01 |
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Unknown Element "SE" when generating NCAA params file containing selenium by liuwenxi » Thu, 2022-08-04 16:24 |
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1,341 |
by liuwenxi Fri, 2022-08-05 09:50 |
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setup_RosettaCM.py by browns02 » Mon, 2021-06-28 07:13 |
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1,341 |
by browns02 Tue, 2021-06-29 11:41 |
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ERROR: Assertion `static_cast< size_type >( i - l_ ) < super::size()` failed. ERROR:: Exit from: src/utility/vectorL.hh line: 42 by yliang20 » Wed, 2022-06-15 22:22 |
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1,326 |
by jxw Wed, 2023-10-11 10:04 |
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[LoopModelerMover] ERROR: Can't build a fold tree from a loop with an unspecified cut point. by dgm3 » Sun, 2021-12-26 18:32 |
1 |
1,320 |
by dgm3 Fri, 2021-12-31 17:42 |
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'standard.wts' does not exist by almeida85 » Mon, 2020-09-14 02:26 |
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1,312 |
by rmoretti Mon, 2020-09-14 06:36 |
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core.pose.util: [ ERROR ] Can't find residue type 'UNK' in type set of mode fa_standard by AlfredoKCL » Sat, 2020-11-07 18:21 |
0 |
1,305 |
by AlfredoKCL Sat, 2020-11-07 18:21 |
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residue_energy_breakdown of a protein-ligand complex. by sam_dc » Tue, 2021-05-18 04:45 |
1 |
1,303 |
by rmoretti Tue, 2021-05-18 07:21 |
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using piper-flexpepdock by syntekabio2019 » Thu, 2019-12-12 01:22 |
0 |
1,303 |
by syntekabio2019 Thu, 2019-12-12 01:22 |
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Ddg filter threshold value? by chrisHKL » Fri, 2020-02-28 15:01 |
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1,287 |
by rmoretti Wed, 2020-03-04 09:56 |
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backrub application, resfile, and pivot_residues by tylerborrman » Tue, 2016-12-06 14:46 |
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1,286 |
by tylerborrman Tue, 2016-12-06 14:46 |
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Energy function and iteration script files by michelleqyh » Fri, 2019-09-27 09:06 |
1 |
1,286 |
by smlewis Fri, 2019-09-27 11:54 |
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I need some help for using pHDock applications(histidine protonation / pH-dependent binding) by leygkn » Tue, 2020-09-22 18:40 |
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1,282 |
by leygkn Tue, 2020-09-22 22:46 |
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manually defining CDRs in antibody modelling by gard.nelson » Fri, 2020-07-10 13:31 |
1 |
1,279 |
by brspurri Wed, 2021-01-20 08:11 |
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Can anybody suggests some flags to run Rifdock? by Hyunmi Song » Sun, 2022-01-23 16:45 |
0 |
1,278 |
by Hyunmi Song Sun, 2022-01-23 16:45 |
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How can I model ligands in comparative modeling by Morrian_Lynn » Thu, 2020-02-20 09:57 |
1 |
1,270 |
by danpf Fri, 2020-02-21 17:05 |
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antibody - sequence position requested was 0 by jremmel » Mon, 2021-09-27 12:26 |
1 |
1,263 |
by nannemdp Mon, 2021-09-27 14:22 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:30 |
1 |
1,256 |
by taylorjones Wed, 2021-06-09 16:38 |
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Symmetry mode in Remodel for N-terminal extension by yvonne.chan2 » Mon, 2019-11-04 13:41 |
0 |
1,251 |
by yvonne.chan2 Mon, 2019-11-04 13:41 |
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Undesirable behaviour of PoseFromSFRBuilder regarding Hydrogen atoms by Corvin » Wed, 2020-12-02 04:00 |
1 |
1,241 |
by rmoretti Wed, 2020-12-02 07:27 |
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mp_transform optimize with franklin2019 scoring by benhardy » Thu, 2020-05-28 08:35 |
0 |
1,236 |
by benhardy Thu, 2020-05-28 08:45 |
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Ligand docking at specific orientation by ShiranBZ » Mon, 2020-04-13 20:46 |
1 |
1,235 |
by matteoferla Mon, 2020-05-04 02:02 |
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FlexPepDock Multi chain receptor by evo_umich » Mon, 2018-04-02 12:13 |
0 |
1,235 |
by evo_umich Mon, 2018-04-02 12:13 |
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Pepspec error by almeida85 » Mon, 2022-05-02 04:07 |
1 |
1,227 |
by almeida85 Mon, 2022-05-02 05:05 |
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How to design the anitgen-antibody interface by Sunyp_IM » Tue, 2017-12-12 18:44 |
0 |
1,226 |
by Sunyp_IM Tue, 2017-12-12 18:44 |
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Changing rosetta scoring to favour less hydrophobic areas by daniloboskovic » Thu, 2020-05-21 03:03 |
1 |
1,226 |
by vmulligan Thu, 2020-05-21 18:33 |
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pepspec anchor dock by Andre Serobian » Tue, 2020-07-28 05:51 |
1 |
1,226 |
by Andre Serobian Tue, 2020-07-28 23:26 |
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