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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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7,144 |
by admin Fri, 2015-09-04 16:17 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,074 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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378 |
by cryosky Sun, 2021-09-26 13:24 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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531 |
by matteoferla Fri, 2021-02-26 07:12 |
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AddMembrane Mover Segmentation Fault by csvajda » Thu, 2022-04-14 14:02 |
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111 |
by csvajda Thu, 2022-04-14 14:02 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,557 |
by joseph Mon, 2014-04-21 06:47 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
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1,204 |
by justin Mon, 2014-04-21 06:47 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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945 |
by Jhreed Fri, 2016-07-08 13:44 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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543 |
by matteoferla Wed, 2020-07-22 03:08 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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1,783 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
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1,628 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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706 |
by matteoferla Fri, 2020-04-10 02:40 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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270 |
by lsong2 Thu, 2021-11-18 10:31 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,041 |
by fmerino Mon, 2017-10-16 04:02 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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227 |
by hanzhiz Thu, 2021-12-16 09:32 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
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1,292 |
by abhishek Mon, 2014-04-21 06:47 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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697 |
by pmit Thu, 2018-05-03 01:48 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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587 |
by nferruz Fri, 2020-08-28 06:05 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,246 |
by justin Mon, 2014-04-21 06:47 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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531 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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52 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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770 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,031 |
by sayan500 Tue, 2019-07-30 22:20 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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1,119 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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562 |
by ate Sat, 2021-05-01 02:52 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
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1,507 |
by jurkm Mon, 2014-04-21 06:47 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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96 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
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1,201 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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566 |
by LTJ Mon, 2020-07-06 14:13 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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354 |
by ate Wed, 2021-06-16 19:19 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,352 |
by DanielK Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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640 |
by matteoferla Sun, 2020-03-22 05:29 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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76 |
by rlwoltz Fri, 2022-04-29 15:15 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,587 |
by Trentage Mon, 2014-04-21 06:47 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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629 |
by rohi Thu, 2020-10-15 10:28 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,213 |
by IgaK Mon, 2014-04-21 06:47 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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576 |
by YuFei Wed, 2020-04-22 17:27 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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687 |
by fgomes Fri, 2019-11-22 19:12 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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425 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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602 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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890 |
by wentlewi Sat, 2020-05-16 08:06 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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531 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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464 |
by Corvin Wed, 2021-05-19 07:54 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,362 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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789 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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799 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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466 |
by rvandamme Mon, 2021-02-01 13:39 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,293 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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527 |
by adityapadhi Wed, 2020-06-24 01:29 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,441 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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883 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,029 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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567 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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116 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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756 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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556 |
by matteoferla Tue, 2020-07-14 01:51 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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226 |
by hanzhiz Thu, 2021-12-16 09:18 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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642 |
by jmaly Wed, 2020-09-02 16:16 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,153 |
by coxford Mon, 2014-04-21 06:47 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,267 |
by tevang Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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973 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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575 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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609 |
by haom Wed, 2020-09-09 09:19 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
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1,190 |
by exchhattu Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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1,157 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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517 |
by ate Sat, 2021-05-01 02:22 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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398 |
by dkesar Fri, 2021-06-04 19:09 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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3,789 |
by xujc Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,201 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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355 |
by Antonia Wed, 2021-06-16 12:30 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,151 |
by DanielK Mon, 2014-04-21 06:47 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,224 |
by albumns Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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427 |
by whiteqiu Mon, 2021-03-01 18:32 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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91 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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263 |
by Wenithor Sat, 2021-10-09 07:23 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,003 |
by jferrie Mon, 2018-04-23 15:25 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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356 |
by rohi Fri, 2021-06-25 10:29 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
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2,029 |
by wtscrystal Mon, 2014-04-21 06:47 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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632 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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519 |
by Sunidhi Sun, 2020-11-01 11:01 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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336 |
by Soler Sat, 2021-11-20 23:41 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
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1,484 |
by anirbanzz Mon, 2014-04-21 06:47 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
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1,276 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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295 |
by Soler Sat, 2022-01-15 22:09 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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994 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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633 |
by yinasun Fri, 2019-07-26 02:17 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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563 |
by haom Tue, 2020-09-01 18:50 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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498 |
by rlwoltz Tue, 2021-08-03 23:26 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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501 |
by pci112 Mon, 2021-04-12 08:12 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
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25 |
by guowuchen Thu, 2022-06-23 04:43 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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766 |
by rlwoltz Mon, 2019-03-11 18:32 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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812 |
by hajar Wed, 2020-06-10 11:17 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,275 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,181 |
by lanselibai Sun, 2014-11-16 10:44 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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507 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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510 |
by jeanramos Mon, 2020-07-13 00:56 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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504 |
by rohi Mon, 2021-03-15 06:31 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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228 |
by tisozaki Tue, 2021-12-14 17:16 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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704 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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534 |
by michelleqyh Fri, 2020-08-21 09:00 |
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