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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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7,738 |
by admin Fri, 2015-09-04 16:17 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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422 |
by almeida85 Thu, 2022-11-17 01:04 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,465 |
by lanselibai Sun, 2014-11-16 10:44 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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1,085 |
by rlwoltz Mon, 2019-03-11 18:32 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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1,229 |
by hajar Wed, 2020-06-10 11:17 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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429 |
by Karthik Wed, 2022-07-13 23:45 |
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Problem with sugar parameters by Martin Floor » Sat, 2023-10-07 10:17 |
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328 |
by Martin Floor Sat, 2023-10-07 10:17 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
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1,453 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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784 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Methodology Feedback with As(III) and Pb(II) Binding by rnogy » Mon, 2023-11-06 17:05 |
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85 |
by rnogy Mon, 2023-11-06 17:06 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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877 |
by rohi Mon, 2021-03-15 06:31 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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232 |
by JasonIsaac Tue, 2023-05-02 03:39 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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517 |
by mgupta Fri, 2022-12-09 01:03 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,857 |
by Trentage Mon, 2014-04-21 06:47 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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763 |
by jeanramos Mon, 2020-07-13 00:56 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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969 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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810 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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854 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
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232 |
by mrosam Thu, 2023-05-25 05:14 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,478 |
by IgaK Mon, 2014-04-21 06:47 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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656 |
by tisozaki Tue, 2021-12-14 17:16 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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1,102 |
by zhoubin Fri, 2019-01-04 13:14 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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932 |
by Kazu Wed, 2020-05-20 11:58 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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875 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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1,745 |
by hltorresvera Tue, 2021-02-09 10:44 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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355 |
by JasonIsaac Wed, 2023-02-22 18:36 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,561 |
by DanielK Mon, 2014-04-21 06:47 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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1,064 |
by bio_james Wed, 2017-12-13 09:13 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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1,047 |
by bazzoli Wed, 2018-10-10 01:59 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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461 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
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235 |
by wwwmrzkwww Sun, 2023-04-23 14:25 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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875 |
by kalabharath Mon, 2020-06-29 06:59 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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656 |
by CameronJA Mon, 2021-06-14 16:12 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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1,008 |
by BioPython Sun, 2019-05-12 20:07 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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753 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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1,039 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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786 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
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536 |
by guowuchen Thu, 2022-06-23 04:43 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,513 |
by tevang Mon, 2014-04-21 06:47 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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553 |
by tlopes Wed, 2022-01-05 18:19 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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1,179 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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1,138 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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1,049 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Replacing a single residue in a structure by Wexter300 » Sat, 2023-09-16 14:23 |
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367 |
by Wexter300 Sat, 2023-09-16 14:23 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
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1,444 |
by exchhattu Mon, 2014-04-21 06:47 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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974 |
by Anpu Thu, 2018-09-27 23:36 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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422 |
by Hyun Tue, 2022-03-29 19:53 |
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protein-protein docking by LUOD » Thu, 2023-11-02 18:23 |
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93 |
by LUOD Thu, 2023-11-02 18:25 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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1,004 |
by yangshen12 Fri, 2018-10-26 12:34 |
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Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
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242 |
by wwwmrzkwww Wed, 2023-04-26 12:35 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,450 |
by albumns Mon, 2014-04-21 06:47 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
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463 |
by mb0261 Tue, 2022-12-06 10:16 |
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Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
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226 |
by seamoon Wed, 2023-05-24 07:46 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
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2,302 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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939 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,524 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
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1,753 |
by anirbanzz Mon, 2014-04-21 06:47 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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1,047 |
by ac.research Mon, 2018-05-14 08:27 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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1,041 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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290 |
by Brian Wiley Sat, 2023-02-04 23:43 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,424 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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721 |
by cryosky Sun, 2021-09-26 13:24 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
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299 |
by xuezhi Wed, 2023-02-15 14:00 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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970 |
by matteoferla Fri, 2021-02-26 07:12 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
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449 |
by Robertofg Tue, 2022-11-22 00:34 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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1,218 |
by Jhreed Fri, 2016-07-08 13:44 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
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402 |
by NingNing Tue, 2022-08-09 17:36 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,154 |
by matteoferla Fri, 2020-04-10 02:40 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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600 |
by lsong2 Thu, 2021-11-18 10:31 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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835 |
by matteoferla Wed, 2020-07-22 03:08 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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965 |
by pmit Thu, 2018-05-03 01:48 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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854 |
by nferruz Fri, 2020-08-28 06:05 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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444 |
by almeida85 Mon, 2022-09-19 07:22 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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835 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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Questions about gen_apo_grids by JasonIsaac » Sat, 2023-06-17 00:20 |
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215 |
by JasonIsaac Sat, 2023-06-17 00:20 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,562 |
by myang Mon, 2014-04-21 06:47 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,336 |
by fmerino Mon, 2017-10-16 04:02 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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608 |
by hanzhiz Thu, 2021-12-16 09:32 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,412 |
by sayan500 Tue, 2019-07-30 22:20 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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1,475 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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891 |
by ate Sat, 2021-05-01 02:52 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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1,060 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
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316 |
by Brian Wiley Sun, 2023-02-12 20:46 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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390 |
by mrosam Mon, 2022-08-08 01:37 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,783 |
by jurkm Mon, 2014-04-21 06:47 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,472 |
by ctaylor Mon, 2014-04-21 06:47 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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451 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,635 |
by DanielK Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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944 |
by matteoferla Sun, 2020-03-22 05:29 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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952 |
by rohi Thu, 2020-10-15 10:28 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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465 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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964 |
by LTJ Mon, 2020-07-06 14:13 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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666 |
by ate Wed, 2021-06-16 19:19 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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871 |
by YuFei Wed, 2020-04-22 17:27 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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715 |
by jackzzs Mon, 2023-05-15 03:17 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,634 |
by exchhattu Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,471 |
by gobli033 Mon, 2014-04-21 06:47 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,487 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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746 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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397 |
by biotech Wed, 2022-10-26 11:17 |
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