You are here
Rosetta 3 - General
Log in to post new content in the forum.
| Topic / Topic starter |
Replies |
Views | Last post | |
|---|---|---|---|---|
|
Sticky:
FAQ by admin » Mon, 2010-08-30 04:16 |
0 |
7,555 |
by admin Fri, 2015-09-04 16:17 |
|
|
Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
0 |
329 |
by mgupta Fri, 2022-12-09 01:03 |
|
|
cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,290 |
by albumns Mon, 2014-04-21 06:47 |
|
|
To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
0 |
1,386 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
0 |
667 |
by jeanramos Mon, 2020-07-13 00:56 |
|
|
Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
0 |
741 |
by rohi Mon, 2021-03-15 06:31 |
|
|
How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
0 |
66 |
by JasonIsaac Tue, 2023-05-02 03:39 |
|
|
Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
0 |
735 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
|
|
Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
0 |
36 |
by mrosam Thu, 2023-05-25 05:14 |
|
|
Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
0 |
514 |
by tisozaki Tue, 2021-12-14 17:16 |
|
|
benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
0 |
1,352 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
0 |
862 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
|
|
Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
0 |
706 |
by michelleqyh Fri, 2020-08-21 09:00 |
|
|
Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
0 |
982 |
by zhoubin Fri, 2019-01-04 13:14 |
|
|
Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
0 |
816 |
by Kazu Wed, 2020-05-20 11:58 |
|
|
Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
0 |
771 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
|
|
ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
0 |
1,410 |
by hltorresvera Tue, 2021-02-09 10:44 |
|
|
Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
0 |
191 |
by JasonIsaac Wed, 2023-02-22 18:36 |
|
|
Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
0 |
743 |
by kalabharath Mon, 2020-06-29 06:59 |
|
|
Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
0 |
547 |
by CameronJA Mon, 2021-06-14 16:12 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
0 |
1,475 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
0 |
951 |
by bio_james Wed, 2017-12-13 09:13 |
|
|
env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
931 |
by bazzoli Wed, 2018-10-10 01:59 |
|
|
Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
0 |
340 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
|
|
how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
0 |
65 |
by wwwmrzkwww Sun, 2023-04-23 14:25 |
|
|
How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
903 |
by BioPython Sun, 2019-05-12 20:07 |
|
|
Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
0 |
637 |
by pedro.guillem Thu, 2020-07-23 03:45 |
|
|
Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
0 |
679 |
by pedro.guillem Thu, 2020-05-14 04:22 |
|
|
protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
0 |
372 |
by guowuchen Thu, 2022-06-23 04:43 |
|
|
Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
0 |
440 |
by tlopes Wed, 2022-01-05 18:19 |
|
|
Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
921 |
by frankfurter1 Wed, 2018-05-09 04:40 |
|
|
solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
1,057 |
by ziqi1234 Thu, 2018-05-24 02:18 |
|
|
Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
0 |
1,016 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
|
|
Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
0 |
1,361 |
by justin Mon, 2014-04-21 06:47 |
|
|
Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
910 |
by Nicole Deng Sat, 2020-06-06 06:40 |
|
|
Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
0 |
2,195 |
by wtscrystal Mon, 2014-04-21 06:47 |
|
|
How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
0 |
867 |
by Anpu Thu, 2018-09-27 23:36 |
|
|
protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
0 |
311 |
by Hyun Tue, 2022-03-29 19:53 |
|
|
Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
0 |
298 |
by mb0261 Tue, 2022-12-06 10:16 |
|
|
crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
0 |
906 |
by yangshen12 Fri, 2018-10-26 12:34 |
|
|
Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
0 |
62 |
by wwwmrzkwww Wed, 2023-04-26 12:35 |
|
|
Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
0 |
37 |
by seamoon Wed, 2023-05-24 07:46 |
|
|
Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
0 |
822 |
by zahra_AZ Mon, 2020-11-09 02:23 |
|
|
sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
0 |
1,417 |
by sumukh21 Mon, 2014-04-21 06:47 |
|
|
shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
0 |
1,354 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
|
|
[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
0 |
933 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
|
|
Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
0 |
127 |
by Brian Wiley Sat, 2023-02-04 23:43 |
|
|
RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
0 |
930 |
by ac.research Mon, 2018-05-14 08:27 |
|
|
How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,310 |
by Anonymous Mon, 2014-04-21 06:47 |
|
|
Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
0 |
604 |
by cryosky Sun, 2021-09-26 13:24 |
|
|
Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
0 |
1,752 |
by Trentage Mon, 2014-04-21 06:47 |
|
|
Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
0 |
134 |
by xuezhi Wed, 2023-02-15 14:00 |
|
|
Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
0 |
296 |
by Robertofg Tue, 2022-11-22 00:34 |
|
|
Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
0 |
1,451 |
by myang Mon, 2014-04-21 06:47 |
|
|
Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
0 |
1,116 |
by Jhreed Fri, 2016-07-08 13:44 |
|
|
Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
0 |
235 |
by NingNing Tue, 2022-08-09 17:36 |
|
|
Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
0 |
820 |
by matteoferla Fri, 2021-02-26 07:12 |
|
|
Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
0 |
936 |
by matteoferla Fri, 2020-04-10 02:40 |
|
|
Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
0 |
486 |
by lsong2 Thu, 2021-11-18 10:31 |
|
|
I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
0 |
724 |
by matteoferla Wed, 2020-07-22 03:08 |
|
|
BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
0 |
727 |
by pedro.guillem Wed, 2020-06-24 04:42 |
|
|
Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
0 |
1,225 |
by fmerino Mon, 2017-10-16 04:02 |
|
|
mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
0 |
482 |
by hanzhiz Thu, 2021-12-16 09:32 |
|
|
Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
0 |
1,371 |
by ctaylor Mon, 2014-04-21 06:47 |
|
|
restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
0 |
858 |
by pmit Thu, 2018-05-03 01:48 |
|
|
Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
0 |
758 |
by nferruz Fri, 2020-08-28 06:05 |
|
|
GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
0 |
244 |
by almeida85 Mon, 2022-09-19 07:22 |
|
|
Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
0 |
1,299 |
by sayan500 Tue, 2019-07-30 22:20 |
|
|
make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
1,342 |
by rlwoltz Fri, 2019-02-01 10:31 |
|
|
Using NCAA by ate » Sat, 2021-05-01 02:52 |
0 |
770 |
by ate Sat, 2021-05-01 02:52 |
|
|
keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
0 |
948 |
by ziqi1234 Fri, 2017-11-10 04:04 |
|
|
Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
0 |
130 |
by Brian Wiley Sun, 2023-02-12 20:46 |
|
|
Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
0 |
1,533 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
Temperature by mrosam » Mon, 2022-08-08 01:37 |
0 |
235 |
by mrosam Mon, 2022-08-08 01:37 |
|
|
Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,677 |
by jurkm Mon, 2014-04-21 06:47 |
|
|
Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
0 |
334 |
by katherinemccoy Tue, 2022-03-29 14:26 |
|
|
using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
0 |
834 |
by rohi Thu, 2020-10-15 10:28 |
|
|
What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
0 |
291 |
by JasonIsaac Mon, 2022-12-05 18:57 |
|
|
running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
0 |
1,417 |
by tevang Mon, 2014-04-21 06:47 |
|
|
Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
0 |
817 |
by LTJ Mon, 2020-07-06 14:13 |
|
|
Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
0 |
557 |
by ate Wed, 2021-06-16 19:19 |
|
|
possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
0 |
1,531 |
by DanielK Mon, 2014-04-21 06:47 |
|
|
SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
0 |
830 |
by matteoferla Sun, 2020-03-22 05:29 |
|
|
ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
0 |
760 |
by YuFei Wed, 2020-04-22 17:27 |
|
|
Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
0 |
83 |
by jackzzs Mon, 2023-05-15 03:17 |
|
|
RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
0 |
1,432 |
by sdh Mon, 2014-04-21 06:47 |
|
|
pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
0 |
1,347 |
by exchhattu Mon, 2014-04-21 06:47 |
|
|
distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,312 |
by tricia Mon, 2014-04-21 06:47 |
|
|
Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
760 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
|
|
Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
0 |
1,191 |
by wentlewi Sat, 2020-05-16 08:06 |
|
|
Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
0 |
958 |
by fgomes Fri, 2019-11-22 19:12 |
|
|
How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
0 |
632 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
|
|
Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
0 |
224 |
by biotech Wed, 2022-10-26 11:17 |
|
|
how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
0 |
1,365 |
by albumns Mon, 2014-04-21 06:47 |
|
|
Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
715 |
by karolcia1010 Wed, 2020-06-17 11:19 |
|
|
Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
0 |
664 |
by Corvin Wed, 2021-05-19 07:54 |
|
|
Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,554 |
by Karol Mon, 2016-08-29 05:27 |
|
|
Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
0 |
972 |
by ziqi1234 Tue, 2017-11-21 05:55 |
|
|
incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
0 |
983 |
by ela Fri, 2018-08-31 02:53 |
|
|
rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
0 |
673 |
by rvandamme Mon, 2021-02-01 13:39 |
Log in to post new content in the forum.
