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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
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7,144 by admin
Fri, 2015-09-04 16:17
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
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2,074 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
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378 by cryosky
Sun, 2021-09-26 13:24
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
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531 by matteoferla
Fri, 2021-02-26 07:12
Normal topic AddMembrane Mover Segmentation Fault
by csvajda » Thu, 2022-04-14 14:02
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111 by csvajda
Thu, 2022-04-14 14:02
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
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1,557 by joseph
Mon, 2014-04-21 06:47
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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1,204 by justin
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
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945 by Jhreed
Fri, 2016-07-08 13:44
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
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543 by matteoferla
Wed, 2020-07-22 03:08
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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1,783 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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1,628 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
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706 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
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270 by lsong2
Thu, 2021-11-18 10:31
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
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1,041 by fmerino
Mon, 2017-10-16 04:02
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
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227 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
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1,292 by abhishek
Mon, 2014-04-21 06:47
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
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697 by pmit
Thu, 2018-05-03 01:48
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
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587 by nferruz
Fri, 2020-08-28 06:05
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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1,246 by justin
Mon, 2014-04-21 06:47
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
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531 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
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52 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
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770 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
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1,031 by sayan500
Tue, 2019-07-30 22:20
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
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1,119 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
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562 by ate
Sat, 2021-05-01 02:52
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
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1,507 by jurkm
Mon, 2014-04-21 06:47
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
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96 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
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1,201 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
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566 by LTJ
Mon, 2020-07-06 14:13
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
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354 by ate
Wed, 2021-06-16 19:19
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
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1,352 by DanielK
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
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640 by matteoferla
Sun, 2020-03-22 05:29
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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76 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
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1,587 by Trentage
Mon, 2014-04-21 06:47
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
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629 by rohi
Thu, 2020-10-15 10:28
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
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1,213 by IgaK
Mon, 2014-04-21 06:47
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
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576 by YuFei
Wed, 2020-04-22 17:27
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
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687 by fgomes
Fri, 2019-11-22 19:12
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
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425 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
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602 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
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890 by wentlewi
Sat, 2020-05-16 08:06
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
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531 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
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464 by Corvin
Wed, 2021-05-19 07:54
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
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1,362 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
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789 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
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799 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
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466 by rvandamme
Mon, 2021-02-01 13:39
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
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1,293 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
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527 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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2,441 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
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883 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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1,029 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
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567 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
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116 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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756 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
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556 by matteoferla
Tue, 2020-07-14 01:51
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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226 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
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642 by jmaly
Wed, 2020-09-02 16:16
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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2,153 by coxford
Mon, 2014-04-21 06:47
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
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1,267 by tevang
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
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973 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
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575 by matteoferla
Thu, 2021-04-01 04:06
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
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609 by haom
Wed, 2020-09-09 09:19
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
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1,190 by exchhattu
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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1,157 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
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517 by ate
Sat, 2021-05-01 02:22
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
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398 by dkesar
Fri, 2021-06-04 19:09
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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3,789 by xujc
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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1,201 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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355 by Antonia
Wed, 2021-06-16 12:30
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,151 by DanielK
Mon, 2014-04-21 06:47
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
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1,224 by albumns
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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427 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
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91 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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263 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
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1,003 by jferrie
Mon, 2018-04-23 15:25
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
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356 by rohi
Fri, 2021-06-25 10:29
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
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2,029 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
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632 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
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519 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
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336 by Soler
Sat, 2021-11-20 23:41
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
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1,484 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
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1,276 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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295 by Soler
Sat, 2022-01-15 22:09
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
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994 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
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633 by yinasun
Fri, 2019-07-26 02:17
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
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563 by haom
Tue, 2020-09-01 18:50
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
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498 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
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501 by pci112
Mon, 2021-04-12 08:12
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
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25 by guowuchen
Thu, 2022-06-23 04:43
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
0
766 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
0
812 by hajar
Wed, 2020-06-10 11:17
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,275 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
0
1,181 by lanselibai
Sun, 2014-11-16 10:44
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
507 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
510 by jeanramos
Mon, 2020-07-13 00:56
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
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504 by rohi
Mon, 2021-03-15 06:31
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
0
228 by tisozaki
Tue, 2021-12-14 17:16
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
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704 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
534 by michelleqyh
Fri, 2020-08-21 09:00

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