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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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7,414 |
by admin Fri, 2015-09-04 16:17 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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886 |
by fgomes Fri, 2019-11-22 19:12 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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577 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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151 |
by biotech Wed, 2022-10-26 11:17 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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708 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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1,119 |
by wentlewi Sat, 2020-05-16 08:06 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,494 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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912 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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922 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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605 |
by rvandamme Mon, 2021-02-01 13:39 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
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1,321 |
by ctaylor Mon, 2014-04-21 06:47 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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654 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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603 |
by Corvin Wed, 2021-05-19 07:54 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,490 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,396 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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649 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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166 |
by liuwenxi Tue, 2022-08-09 08:33 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,550 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,030 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,203 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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679 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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346 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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170 |
by SebastianBB Mon, 2022-11-21 08:33 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,326 |
by gobli033 Mon, 2014-04-21 06:47 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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873 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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865 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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184 |
by ialvy Tue, 2022-08-30 00:00 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,468 |
by exchhattu Mon, 2014-04-21 06:47 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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403 |
by hanzhiz Thu, 2021-12-16 09:18 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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66 |
by SubhaK Thu, 2023-01-26 21:29 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
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1,242 |
by albumns Mon, 2014-04-21 06:47 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,339 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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781 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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159 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,304 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,087 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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811 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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234 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
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1,378 |
by sdh Mon, 2014-04-21 06:47 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
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1,290 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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739 |
by haom Wed, 2020-09-09 09:19 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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164 |
by He Xiao Mon, 2022-11-07 04:10 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,659 |
by joseph Mon, 2014-04-21 06:47 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
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1,264 |
by tricia Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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1,454 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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651 |
by ate Sat, 2021-05-01 02:22 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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200 |
by mb0261 Thu, 2022-06-30 10:48 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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535 |
by dkesar Fri, 2021-06-04 19:09 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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3,935 |
by xujc Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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1,878 |
by burkheadlab Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,321 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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491 |
by Antonia Wed, 2021-06-16 12:30 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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177 |
by csvajda Sat, 2022-08-13 08:08 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,249 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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547 |
by whiteqiu Mon, 2021-03-01 18:32 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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265 |
by rlwoltz Fri, 2022-04-29 15:15 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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427 |
by Wenithor Sat, 2021-10-09 07:23 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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226 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,384 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,141 |
by jferrie Mon, 2018-04-23 15:25 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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492 |
by rohi Fri, 2021-06-25 10:29 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
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155 |
by cttm4a1 Wed, 2022-09-07 23:41 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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736 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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647 |
by Sunidhi Sun, 2020-11-01 11:01 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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487 |
by Soler Sat, 2021-11-20 23:41 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
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1,389 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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465 |
by Soler Sat, 2022-01-15 22:09 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,509 |
by w107kdk Mon, 2014-04-21 06:47 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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1,116 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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737 |
by yinasun Fri, 2019-07-26 02:17 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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676 |
by haom Tue, 2020-09-01 18:50 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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700 |
by rlwoltz Tue, 2021-08-03 23:26 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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157 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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641 |
by pci112 Mon, 2021-04-12 08:12 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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220 |
by aastha.pal Mon, 2022-06-27 09:34 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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156 |
by almeida85 Thu, 2022-11-17 01:04 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,286 |
by lanselibai Sun, 2014-11-16 10:44 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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905 |
by rlwoltz Mon, 2019-03-11 18:32 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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983 |
by hajar Wed, 2020-06-10 11:17 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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211 |
by Karthik Wed, 2022-07-13 23:45 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
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1,302 |
by justin Mon, 2014-04-21 06:47 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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618 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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623 |
by jeanramos Mon, 2020-07-13 00:56 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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671 |
by rohi Mon, 2021-03-15 06:31 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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250 |
by mgupta Fri, 2022-12-09 01:03 |
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Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
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1,745 |
by wtscrystal Mon, 2014-04-21 06:47 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,345 |
by justin Mon, 2014-04-21 06:47 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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803 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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659 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
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1,405 |
by abhishek Mon, 2014-04-21 06:47 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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683 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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419 |
by tisozaki Tue, 2021-12-14 17:16 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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881 |
by zhoubin Fri, 2019-01-04 13:14 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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756 |
by Kazu Wed, 2020-05-20 11:58 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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724 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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1,209 |
by hltorresvera Tue, 2021-02-09 10:44 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
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1,310 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,698 |
by Trentage Mon, 2014-04-21 06:47 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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691 |
by kalabharath Mon, 2020-06-29 06:59 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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496 |
by CameronJA Mon, 2021-06-14 16:12 |
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