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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
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7,414 by admin
Fri, 2015-09-04 16:17
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
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886 by fgomes
Fri, 2019-11-22 19:12
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
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577 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
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151 by biotech
Wed, 2022-10-26 11:17
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
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708 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
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1,119 by wentlewi
Sat, 2020-05-16 08:06
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
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1,494 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
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912 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
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922 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
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605 by rvandamme
Mon, 2021-02-01 13:39
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
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1,321 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
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654 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
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603 by Corvin
Wed, 2021-05-19 07:54
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
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1,490 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
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1,396 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
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649 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
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166 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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2,550 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
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1,030 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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1,203 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
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679 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
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346 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
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170 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
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1,326 by gobli033
Mon, 2014-04-21 06:47
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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873 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
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865 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
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184 by ialvy
Tue, 2022-08-30 00:00
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
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1,468 by exchhattu
Mon, 2014-04-21 06:47
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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403 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.
by SubhaK » Thu, 2023-01-26 21:29
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66 by SubhaK
Thu, 2023-01-26 21:29
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
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1,242 by albumns
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
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1,339 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
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781 by jmaly
Wed, 2020-09-02 16:16
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
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159 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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2,304 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
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1,087 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
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811 by matteoferla
Thu, 2021-04-01 04:06
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
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234 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
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1,378 by sdh
Mon, 2014-04-21 06:47
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
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1,290 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
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739 by haom
Wed, 2020-09-09 09:19
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
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164 by He Xiao
Mon, 2022-11-07 04:10
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
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1,659 by joseph
Mon, 2014-04-21 06:47
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
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1,264 by tricia
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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1,454 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
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651 by ate
Sat, 2021-05-01 02:22
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
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200 by mb0261
Thu, 2022-06-30 10:48
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
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535 by dkesar
Fri, 2021-06-04 19:09
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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3,935 by xujc
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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1,878 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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1,321 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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491 by Antonia
Wed, 2021-06-16 12:30
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
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177 by csvajda
Sat, 2022-08-13 08:08
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,249 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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547 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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265 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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427 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
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226 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
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1,384 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
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1,141 by jferrie
Mon, 2018-04-23 15:25
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
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492 by rohi
Fri, 2021-06-25 10:29
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
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155 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
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736 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
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647 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
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487 by Soler
Sat, 2021-11-20 23:41
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
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1,389 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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465 by Soler
Sat, 2022-01-15 22:09
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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1,509 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
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1,116 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
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737 by yinasun
Fri, 2019-07-26 02:17
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
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676 by haom
Tue, 2020-09-01 18:50
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
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700 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
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157 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
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641 by pci112
Mon, 2021-04-12 08:12
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
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220 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
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156 by almeida85
Thu, 2022-11-17 01:04
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
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1,286 by lanselibai
Sun, 2014-11-16 10:44
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
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905 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
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983 by hajar
Wed, 2020-06-10 11:17
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
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211 by Karthik
Wed, 2022-07-13 23:45
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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1,302 by justin
Mon, 2014-04-21 06:47
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
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618 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
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623 by jeanramos
Mon, 2020-07-13 00:56
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
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671 by rohi
Mon, 2021-03-15 06:31
Normal topic Unexpected length of light chain FR1
by mgupta » Fri, 2022-12-09 01:03
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250 by mgupta
Fri, 2022-12-09 01:03
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
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1,745 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
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1,345 by justin
Mon, 2014-04-21 06:47
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
0
803 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
659 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
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1,405 by abhishek
Mon, 2014-04-21 06:47
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
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683 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
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419 by tisozaki
Tue, 2021-12-14 17:16
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
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881 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
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756 by Kazu
Wed, 2020-05-20 11:58
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
724 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
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1,209 by hltorresvera
Tue, 2021-02-09 10:44
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
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1,310 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
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1,698 by Trentage
Mon, 2014-04-21 06:47
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
691 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
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496 by CameronJA
Mon, 2021-06-14 16:12

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