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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
7,143 by admin
Fri, 2015-09-04 16:17
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
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20 by guowuchen
Thu, 2022-06-23 04:43
Normal topic genkic mover produced an unwanted HN - CA bond
by cttm4a1 » Mon, 2022-06-20 14:25
2
44 by cttm4a1
Mon, 2022-06-20 16:58
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
1
66 by matteoferla
Fri, 2022-06-17 10:38
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
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49 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Problem with undetected lower and upper terminus variants for new polymer
by Martin Floor » Sat, 2022-06-11 06:51
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75 by matteoferla
Wed, 2022-06-15 02:03
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
79 by matteoferla
Thu, 2022-06-09 14:41
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
83 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
116 by asbelx
Mon, 2022-06-06 23:15
Normal topic Rosetta for design of artifical metalloenzyme
by Delfosse57 » Thu, 2022-05-19 21:47
1
204 by matteoferla
Fri, 2022-06-03 01:09
Normal topic RNA update library
by Anne Klein » Mon, 2022-05-16 16:04
2
151 by Anne Klein
Tue, 2022-05-24 21:38
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
134 by ajasja
Mon, 2022-05-23 07:19
Normal topic -ignore_unrecognized_res doesn't work
by e3lm » Fri, 2022-05-06 14:47
2
147 by e3lm
Fri, 2022-05-06 16:10
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
0
144 by guowuchen
Thu, 2022-05-05 06:20
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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74 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
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90 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
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103 by amcallister
Fri, 2022-04-22 11:26
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
295 by protein_fan
Fri, 2022-04-15 17:41
Normal topic AddMembrane Mover Segmentation Fault
by csvajda » Thu, 2022-04-14 14:02
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109 by csvajda
Thu, 2022-04-14 14:02
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
114 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
116 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
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211 by rjacak
Thu, 2022-03-31 10:53
Normal topic RifDock building error on Ubuntu 20.04,please help!
by guowuchen » Mon, 2022-03-28 03:53
2
276 by guowuchen
Wed, 2022-03-30 04:20
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
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87 by Hyun
Tue, 2022-03-29 19:53
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
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95 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
208 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
197 by LanMei
Tue, 2022-03-22 20:45
Normal topic Rosetta-foldtree and docking
by tingting » Tue, 2022-03-15 22:49
3
260 by rmoretti
Thu, 2022-03-17 08:30
Normal topic Rosetta (antibody_designer) performance
by Kihang _Youn » Wed, 2022-03-02 00:48
7
516 by Kihang _Youn
Thu, 2022-03-10 16:30
Normal topic Cannot Open Resfile
by csvajda » Fri, 2022-03-04 13:39
3
315 by csvajda
Mon, 2022-03-07 07:46
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
251 by vmulligan
Thu, 2022-03-03 18:48
Normal topic I_sc
by Soler » Sat, 2022-02-12 00:16
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304 by rmoretti
Fri, 2022-02-18 11:14
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
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323 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic C-term amidation
by tttt » Tue, 2021-03-02 07:46
4
1,269 by tatsiana.bylund
Mon, 2022-01-24 07:58
Normal topic Ineffective Constraints
by Sandy » Tue, 2017-09-05 19:36
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1,551 by CameronJA
Wed, 2022-01-19 20:50
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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293 by Soler
Sat, 2022-01-15 22:09
Normal topic pyrosetta.rosetta.core.pose.rna
by chenjief » Tue, 2021-11-23 07:03
3
641 by matteoferla
Mon, 2022-01-10 06:44
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
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222 by tlopes
Wed, 2022-01-05 18:19
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
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226 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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225 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
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227 by tisozaki
Tue, 2021-12-14 17:16
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
399 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
404 by rmoretti
Tue, 2021-11-30 07:41
Normal topic PIPER-FlexPepDock protocol file apply_ftresult.py missing
by diasmarieli » Thu, 2021-11-04 06:33
2
592 by diasmarieli
Fri, 2021-11-26 05:11
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
523 by hong wei
Thu, 2021-11-25 02:46
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
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334 by Soler
Sat, 2021-11-20 23:41
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
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267 by lsong2
Thu, 2021-11-18 10:31
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
325 by ajasja
Thu, 2021-11-18 00:33
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
367 by gezmi
Sat, 2021-11-06 15:26
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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262 by Wenithor
Sat, 2021-10-09 07:23
Normal topic ref2015: approx. kcal/mol or actually kJ/mol?
by matteoferla » Thu, 2021-10-07 04:04
2
549 by matteoferla
Thu, 2021-10-07 09:31
Normal topic problem plotting results from docking_analyser with provided Rscript
by madammolecular » Mon, 2021-02-01 14:44
2
717 by amystevens
Thu, 2021-09-30 14:18
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
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3,029 by matteoferla
Wed, 2021-09-29 01:58
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
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376 by cryosky
Sun, 2021-09-26 13:24
Normal topic Help deciphering an input
by Elijah_Hix » Wed, 2021-09-22 11:12
2
501 by Elijah_Hix
Thu, 2021-09-23 10:13
Normal topic pmut and scoring
by ldlamini » Tue, 2021-09-14 00:46
3
736 by matteoferla
Mon, 2021-09-20 06:05
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
441 by cryosky
Fri, 2021-09-17 22:04
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
11
8,752 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic Error_fragment_generation
by Payal Chatterjee » Fri, 2016-02-12 12:11
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4,977 by G Mustafa
Fri, 2021-09-10 01:16
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
530 by asbelx
Wed, 2021-09-08 23:19
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
580 by matteoferla
Thu, 2021-09-02 03:50
Normal topic how does rosetta handle hydrogens?
by patcD » Tue, 2021-08-31 00:48
2
571 by patcD
Wed, 2021-09-01 06:54
Normal topic How to set start coordinates for ligand when doing protein_ligand docking
by Huanhuan » Wed, 2021-08-18 21:09
3
720 by matteoferla
Fri, 2021-08-20 08:37
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
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423 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Better minimization with Rosetta
by Elijah_Hix » Wed, 2021-07-28 13:53
1
604 by matteoferla
Mon, 2021-08-09 01:53
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
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497 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
564 by zivben
Sat, 2021-07-31 08:16
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
571 by ahuls1
Thu, 2021-07-29 13:23
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
558 by rmoretti
Wed, 2021-07-14 07:07
Normal topic covalent ligand docking in Rosetta
by rohi » Mon, 2021-06-07 06:39
12
3,222 by matteoferla
Wed, 2021-07-14 04:03
Normal topic Why does the sum of the per-residue total energy not match the whole score?
by matteoferla » Fri, 2021-07-09 08:36
2
615 by matteoferla
Mon, 2021-07-12 02:23
Normal topic Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal?
by ericlang » Mon, 2021-07-05 05:43
2
551 by ericlang
Mon, 2021-07-05 06:59
Normal topic Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed)
by sgaray » Thu, 2021-06-24 14:47
2
795 by sgaray
Fri, 2021-06-25 11:26
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
0
355 by rohi
Fri, 2021-06-25 10:29
Normal topic Add a ligand with only one atom (i.e. Zn) to the RosettaCM
by lanselibai » Tue, 2021-06-22 10:28
6
1,116 by rmoretti
Thu, 2021-06-24 12:23
Normal topic RosettaCM: threading okay, but hybridize loses many secondary structure
by lanselibai » Wed, 2021-06-23 13:51
2
553 by lanselibai
Thu, 2021-06-24 10:16
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
450 by lanselibai
Wed, 2021-06-23 14:53
Normal topic RosettaCM: "Ligands must be added to all templates"
by lanselibai » Tue, 2021-06-22 10:42
2
545 by lanselibai
Wed, 2021-06-23 13:21
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
527 by rmoretti
Wed, 2021-06-23 02:17
Normal topic adding NCAA to the N-terminal of RCSB pdb
by ate » Tue, 2021-06-08 08:24
4
1,086 by Subhrodeep Saha
Sat, 2021-06-19 07:17
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
353 by ate
Wed, 2021-06-16 19:19
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
354 by Antonia
Wed, 2021-06-16 12:30
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
354 by CameronJA
Mon, 2021-06-14 16:12
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
489 by taylorjones
Wed, 2021-06-09 16:30
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
455 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
396 by dkesar
Fri, 2021-06-04 19:09
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
676 by matteoferla
Thu, 2021-06-03 08:24
Normal topic partial charge of params file in ligand docking
by rohi » Fri, 2021-05-28 08:43
1
605 by rmoretti
Fri, 2021-05-28 08:54
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
463 by Corvin
Wed, 2021-05-19 07:54
Normal topic Rosetta Double changing mmCIF chain ID
by Victor Tobiasson » Thu, 2021-05-13 07:57
2
729 by Victor Tobiasson
Thu, 2021-05-13 08:33
Normal topic Rotate chain
by Germanico » Sun, 2021-05-09 16:36
3
931 by danpf
Mon, 2021-05-10 10:04
Normal topic Calibur not listing cluster members
by Swillard » Sun, 2018-07-01 13:07
2
1,603 by benhardy
Fri, 2021-05-07 07:22
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
0
560 by ate
Sat, 2021-05-01 02:52
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
515 by ate
Sat, 2021-05-01 02:22
Normal topic Speeding up FastDesign
by ebetica0 » Wed, 2021-04-28 13:08
1
686 by vmulligan
Wed, 2021-04-28 14:20
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
624 by rmoretti
Tue, 2021-04-20 13:06
Normal topic opencl support programs
by x_wuxi » Mon, 2021-04-12 18:17
1
676 by rmoretti
Tue, 2021-04-13 06:42
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
500 by pci112
Mon, 2021-04-12 08:12
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
684 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Ligand being read as part of protein structure
by MarkusAurelius » Thu, 2021-04-01 11:00
2
811 by MarkusAurelius
Fri, 2021-04-02 11:44

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