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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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1,653 |
by ylwang Tue, 2019-10-08 18:34 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,429 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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AtomPair and SPLINE by attesor » Sat, 2015-06-20 11:42 |
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3,412 |
by attesor Thu, 2015-10-22 03:42 |
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ERROR:: Exit from: src/core/fragment/ConstantLengthFragSet.cc line: 116 by phanvy » Wed, 2014-10-08 22:28 |
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2,694 |
by phanvy Wed, 2014-10-15 21:41 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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476 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error by Karol » Wed, 2016-05-04 08:47 |
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14,129 |
by smlewis Tue, 2016-05-17 08:06 |
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No structure mods allowed during scoring! error by jadolfbr » Wed, 2013-12-04 14:06 |
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2,846 |
by jadolfbr Mon, 2014-04-21 06:48 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,202 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
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134 |
by xuezhi Wed, 2023-02-15 14:00 |
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"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
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2,037 |
by rmoretti Fri, 2016-10-14 15:46 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
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3,260 |
by Awagner7 Tue, 2020-04-28 10:51 |
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"CEN" atom in the pdb file by wszjzhang » Wed, 2010-03-17 14:35 |
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4,269 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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"Illegal Instruction" for particular Movers/Filters by Jhreed » Thu, 2016-08-11 12:59 |
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1,878 |
by smlewis Thu, 2016-08-11 13:16 |
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"Local sequence-structure compatability" in "design of ideal protein structures" by petrikigor » Sun, 2012-12-02 09:25 |
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2,811 |
by petrikigor Mon, 2014-04-21 06:47 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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919 |
by matteoferla Tue, 2020-07-14 01:51 |
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"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
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2,263 |
by smlewis Mon, 2014-04-21 06:47 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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3,053 |
by fred Fri, 2014-04-04 11:34 |
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'-norepack_disulf' flag NOT work in Ligand-protein docking ? by darlintai » Tue, 2011-01-11 22:21 |
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5,509 |
by smlewis Mon, 2014-04-21 06:47 |
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-dock_pert problem by mahajanr » Mon, 2010-07-19 15:45 |
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9,737 |
by weitzner Mon, 2014-04-21 06:47 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
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3,005 |
by vsjasion Mon, 2014-04-21 06:47 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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660 |
by e3lm Fri, 2022-05-06 16:10 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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3,461 |
by tsjain Mon, 2014-04-21 06:47 |
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-RBSegmentRelax:cst_wt not present in ca_to_allatom.linuxgccrelease application? by Karol » Thu, 2016-05-12 06:30 |
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2,249 |
by Karol Thu, 2016-05-12 07:58 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,565 |
by w107kdk Mon, 2014-04-21 06:47 |
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3D Structure Prediction by anirbanzz » Sat, 2010-04-17 02:47 |
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2,419 |
by smlewis Mon, 2014-04-21 06:47 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
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1,450 |
by bjharris Wed, 2020-09-09 20:04 |
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a question about loop refinement by albumns » Fri, 2012-03-02 09:38 |
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4,984 |
by albumns Mon, 2014-04-21 06:47 |
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A question about Multiple constraints by kxiao » Mon, 2014-06-16 07:02 |
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6,506 |
by masterofpuppets Fri, 2014-12-19 08:30 |
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a question about protein-ligand docking in generating 1SW2 conformers by Ryhon Wang » Wed, 2014-05-28 22:27 |
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3,134 |
by rmoretti Tue, 2014-06-03 11:45 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,451 |
by myang Mon, 2014-04-21 06:47 |
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ab initio folding part of a protein by attesor » Wed, 2013-03-06 04:39 |
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2,019 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
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1,376 |
by rmoretti Wed, 2018-11-21 14:01 |
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Ab Initio Modelling of Protein with Small-Molecule Cofactor by jurkm » Thu, 2011-03-10 06:56 |
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14,467 |
by jseco Mon, 2021-03-08 03:46 |
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ab initio protein structure prediction by croshong » Wed, 2009-12-16 23:25 |
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1,962 |
by smlewis Mon, 2014-04-21 06:47 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
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1,372 |
by smlewis Tue, 2018-08-07 16:59 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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704 |
by pci112 Mon, 2021-04-12 08:12 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
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1,454 |
by abhishek Mon, 2014-04-21 06:47 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
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2,392 |
by maruhuang Thu, 2019-09-26 18:55 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
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11,413 |
by masterofpuppets Tue, 2015-02-10 01:33 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
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4,123 |
by w107kdk Mon, 2014-04-21 06:47 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
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7,368 |
by albumns Mon, 2014-04-21 06:47 |
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abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
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4,404 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio Calculations - typical parameters by vamsi » Thu, 2010-11-11 07:06 |
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5,331 |
by smlewis Mon, 2014-04-21 06:47 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
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747 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
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2,178 |
by smlewis Wed, 2018-04-04 10:42 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
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3,292 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Abinitio Structure Prediction - Sanity Test by westleys » Tue, 2010-06-01 00:28 |
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2,686 |
by westleys Mon, 2014-04-21 06:47 |
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Abinitio Video by ac.research » Tue, 2017-09-12 04:00 |
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2,963 |
by ac.research Sun, 2017-09-24 11:25 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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1,278 |
by danpf Tue, 2019-09-03 10:39 |
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AbinitioRelax under different directories without -constant_seed -jran flag by xpzhang » Wed, 2010-09-15 14:56 |
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6,922 |
by rmoretti Mon, 2014-04-21 06:47 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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10,892 |
by smlewis Mon, 2014-04-21 06:47 |
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AbinitioRelax with restraints/constraints by jtmacd » Mon, 2011-07-11 07:07 |
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3,906 |
by jtmacd Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
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8,496 |
by jamsmad Mon, 2014-04-21 06:47 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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1,752 |
by nleroy Fri, 2019-11-08 12:44 |
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abinitiorelax: No funnel by cno » Tue, 2010-07-27 06:14 |
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4,923 |
by biofisikx Mon, 2014-04-21 06:47 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
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2,411 |
by smlewis Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,383 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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About align hundreds of pdb structures produced by rosseta membrane abinitio by ritacc18 » Wed, 2013-05-22 12:37 |
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5,954 |
by ssrb Tue, 2015-09-22 08:35 |
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about constraints by jiongzhang » Wed, 2011-02-23 15:59 |
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22,025 |
by rmoretti Wed, 2015-02-18 09:23 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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1,857 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
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9,552 |
by smlewis Mon, 2014-04-21 06:47 |
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About Rosetta Scoring Function by wszjzhang » Wed, 2010-02-03 09:22 |
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2,193 |
by smlewis Mon, 2014-04-21 06:47 |
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About RosettaScript examples by jiongzhang » Thu, 2012-03-08 10:50 |
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2,156 |
by smlewis Mon, 2014-04-21 06:47 |
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about the option -constraints:cst_fa_file & -constraints:cst_fa_weight by jiongzhang » Sat, 2010-12-25 12:55 |
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3,052 |
by smlewis Mon, 2014-04-21 06:47 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
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8,329 |
by rmoretti Mon, 2014-04-21 06:48 |
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Access sigma values for rotamers by pachecoj » Thu, 2014-05-15 07:10 |
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4,908 |
by rmoretti Sat, 2014-05-17 14:10 |
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activation of filters in rosetta3.0 or later by exchhattu » Thu, 2009-12-03 17:52 |
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2,464 |
by exchhattu Mon, 2014-04-21 06:47 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
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1,941 |
by rmoretti Thu, 2021-06-24 12:23 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
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1,723 |
by rmoretti Fri, 2019-03-29 14:43 |
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Adding centroid .params files for non-canonical residues based on all-atom .params files by jcminerlanl » Thu, 2017-04-27 09:28 |
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2,241 |
by vmulligan Thu, 2017-04-27 16:41 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
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1,859 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
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410 |
by JasonIsaac Mon, 2022-12-05 18:41 |
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Adding new files using rosetta classes went wrong by Jeremy1990 » Sun, 2015-04-26 01:07 |
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3,408 |
by rmoretti Thu, 2015-04-30 16:09 |
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Adding noncanonical amino acid (PCA) to Rosetta 3 by JuliusSu » Fri, 2014-08-01 11:23 |
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3,614 |
by JuliusSu Fri, 2014-08-08 02:07 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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964 |
by rlwoltz Mon, 2019-03-11 18:32 |
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All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
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2,162 |
by smlewis Mon, 2014-04-21 06:47 |
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all-atom refinement with Relax application by zwenthor » Mon, 2010-02-15 22:45 |
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2,569 |
by zwenthor Mon, 2014-04-21 06:47 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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2,116 |
by rmoretti Tue, 2014-07-01 12:21 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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1,648 |
by smlewis Tue, 2018-06-19 10:31 |
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an old question by albumns » Sun, 2012-10-28 12:14 |
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4,279 |
by rmoretti Mon, 2014-04-21 06:47 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
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1,357 |
by rohi Tue, 2020-10-13 09:15 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
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3,103 |
by smlewis Mon, 2014-04-21 06:47 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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2,250 |
by smlewis Mon, 2014-04-21 06:47 |
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Another request for help with restarts by jasnyderjr » Tue, 2015-08-18 12:14 |
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2,592 |
by rmoretti Tue, 2015-08-18 17:11 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
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3,611 |
by cannond Wed, 2017-03-01 08:05 |
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Antibody homology modeling fails after blastp by sunhwan » Sat, 2017-02-18 11:25 |
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5,272 |
by sunhwan Mon, 2017-02-27 11:02 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,658 |
by jadolfbr Fri, 2016-02-05 15:32 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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288 |
by aastha.pal Mon, 2022-06-27 09:34 |
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Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
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61 |
by wwwmrzkwww Wed, 2023-04-26 12:35 |
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Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
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11,012 |
by rmoretti Fri, 2015-04-24 12:15 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
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465 |
by matteoferla Wed, 2022-07-20 10:33 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,074 |
by sheehajh Fri, 2020-02-21 12:41 |
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Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
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3,987 |
by rmoretti Mon, 2018-08-20 11:45 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
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2,342 |
by rmoretti Mon, 2014-04-21 06:47 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
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1,903 |
by rmoretti Fri, 2014-09-12 09:11 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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1,883 |
by rmoretti Mon, 2014-04-21 06:48 |
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B1_SampleSegment1.sh from RosettaES tutorial crashes by ab » Tue, 2017-07-04 08:42 |
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8,007 |
by brandon.frenz Sat, 2017-07-08 13:49 |
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backbone-independent density by SergeyP » Sun, 2016-03-20 04:57 |
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2,264 |
by SergeyP Thu, 2016-05-05 02:07 |
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backrub and design by jtmacd » Thu, 2009-06-04 08:44 |
1 |
2,002 |
by jtmacd Mon, 2014-04-21 06:47 |
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