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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
7,539 by admin
Fri, 2015-09-04 16:17
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
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14 by almeida85
Thu, 2023-05-25 06:18
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
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14 by mrosam
Thu, 2023-05-25 05:14
Normal topic Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help)
by seamoon » Wed, 2023-05-24 07:46
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17 by seamoon
Wed, 2023-05-24 07:46
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
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51 by chenna
Sun, 2023-04-23 23:52
Normal topic Any general way to generate .params file for beta and gamma NCAA?
by wwwmrzkwww » Wed, 2023-04-26 12:35
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51 by wwwmrzkwww
Wed, 2023-04-26 12:35
Normal topic how to generate _prepro.rama file for a customized beta-amino acid residues?
by wwwmrzkwww » Sun, 2023-04-23 14:25
0
54 by wwwmrzkwww
Sun, 2023-04-23 14:25
Normal topic How many rifdock can I run at a time on a 64 CPUs and 512GB memory server?
by JasonIsaac » Tue, 2023-05-02 03:39
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56 by JasonIsaac
Tue, 2023-05-02 03:39
Normal topic Converting all residues to poly-Gly/Ala
by jtpi6174 » Tue, 2023-05-09 14:14
2
67 by jtpi6174
Tue, 2023-05-09 15:51
Normal topic Intel MPI: early exit due to job process stopped.
by jackzzs » Mon, 2023-05-15 02:57
0
69 by jackzzs
Mon, 2023-05-15 03:17
Normal topic rosie github log in
by YUANXU » Tue, 2023-04-25 20:13
1
84 by Sergey
Thu, 2023-04-27 12:03
Normal topic Error with residue selectors not counting indices correctly.
by Wexter300 » Tue, 2023-04-04 11:04
1
100 by ajasja
Wed, 2023-04-05 00:20
Normal topic Error in H3_modeling_scores.fasc file from antibody_H3 program
by Brian Wiley » Sat, 2023-02-04 23:41
0
114 by Brian Wiley
Sat, 2023-02-04 23:43
Normal topic Segmentation fault with nstruct > 1
by Brian Wiley » Sun, 2023-02-12 20:46
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116 by Brian Wiley
Sun, 2023-02-12 20:46
Normal topic Rosetta remodelling - how to change the added residue type instead of just VAL
by xuezhi » Wed, 2023-02-15 14:00
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125 by xuezhi
Wed, 2023-02-15 14:00
Normal topic ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction.
by sia » Mon, 2023-05-08 06:36
6
125 by rmoretti
Tue, 2023-05-16 07:10
Normal topic Calculating SAP score using RosettaScripts
by varunmc99 » Fri, 2023-05-12 11:03
2
126 by varunmc99
Fri, 2023-05-12 11:49
Normal topic How to set jump between ligands
by Zehui Zhou » Wed, 2023-02-15 04:48
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140 by Zehui Zhou
Wed, 2023-02-15 07:12
Normal topic Truncating a protein using rosetta
by Wexter300 » Mon, 2023-02-13 12:05
2
160 by Wexter300
Mon, 2023-02-13 13:04
Normal topic Should all input structures to energy_based_clustering have an output pdb file?
by Brian Wiley » Mon, 2023-01-30 20:42
2
169 by Brian Wiley
Tue, 2023-01-31 19:08
Normal topic Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody.
by SubhaK » Thu, 2023-01-26 21:29
1
173 by rmoretti
Mon, 2023-02-06 14:35
Normal topic Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state?
by JasonIsaac » Wed, 2023-02-22 18:36
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181 by JasonIsaac
Wed, 2023-02-22 18:36
Normal topic Method for adding residues into PDB's w/ RosettaScripts.
by Wexter300 » Wed, 2023-03-15 13:07
1
183 by rmoretti
Thu, 2023-03-16 11:46
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
192 by rmoretti
Fri, 2023-02-24 13:58
Normal topic Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'?
by JW_24 » Tue, 2023-01-24 04:40
2
196 by JW_24
Tue, 2023-01-24 14:52
Normal topic Figuring out the input flags required for this script
by jjung380 » Wed, 2023-04-19 14:17
3
197 by rmoretti
Mon, 2023-05-15 15:23
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
198 by JW_24
Tue, 2023-01-24 04:55
Normal topic RuntimeError: CUDA out of memory.
by ravi.thakkar » Tue, 2023-03-07 00:27
2
198 by rmoretti
Tue, 2023-03-07 08:18
Normal topic Run protein-protein docking parallelly by mpi
by Zehui Zhou » Thu, 2023-02-02 06:23
3
208 by Zehui Zhou
Fri, 2023-02-03 05:51
Normal topic Error when attempting to relax pdb, "flag_input_relax" not found
by Wexter300 » Mon, 2023-01-23 11:32
4
215 by Wexter300
Wed, 2023-01-25 12:34
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
0
216 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
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217 by biotech
Wed, 2022-10-26 11:17
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
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221 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
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225 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic Missing atoms, unable to fill in missing atoms
by kwu030 » Fri, 2023-05-05 12:58
12
226 by kwu030
Thu, 2023-05-18 08:31
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
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226 by mrosam
Mon, 2022-08-08 01:37
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
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227 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
0
227 by almeida85
Thu, 2022-11-17 01:04
Normal topic Interface scores comparison
by NingNing » Tue, 2022-08-09 17:36
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227 by NingNing
Tue, 2022-08-09 17:36
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
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232 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
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233 by He Xiao
Mon, 2022-11-07 04:10
Normal topic GeneralizedKIC side chain closure.
by almeida85 » Mon, 2022-09-19 06:13
0
236 by almeida85
Mon, 2022-09-19 07:22
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
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242 by ialvy
Tue, 2022-08-30 00:00
Normal topic How to add uncommon metal elements into Rosetta and make it recognizable?
by JasonIsaac » Thu, 2023-02-09 00:08
4
244 by JasonIsaac
Sat, 2023-02-11 00:44
Normal topic Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi
by SamuelGong » Fri, 2023-01-27 06:20
3
248 by rmoretti
Mon, 2023-01-30 08:04
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
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256 by mb0261
Thu, 2022-06-30 10:48
Normal topic Calculating shape complementarity of ligand and protein
by varunmc99 » Tue, 2023-01-17 11:29
1
256 by rmoretti
Mon, 2023-02-06 14:42
Normal topic Score function in protein-protein docking with constrains
by Zehui Zhou » Mon, 2023-02-06 03:31
2
260 by Zehui Zhou
Wed, 2023-02-15 05:40
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
0
265 by Karthik
Wed, 2022-07-13 23:45
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
1
266 by rmoretti
Wed, 2022-09-14 09:14
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
0
269 by csvajda
Sat, 2022-08-13 08:08
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
0
280 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic What should I do to lower down the fa_sol scores?
by JasonIsaac » Mon, 2022-12-05 18:57
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282 by JasonIsaac
Mon, 2022-12-05 18:57
Normal topic Prepacking crashing using metalloprotein
by mb0261 » Tue, 2022-12-06 10:16
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286 by mb0261
Tue, 2022-12-06 10:16
Normal topic Loop modeling
by Robertofg » Tue, 2022-11-22 00:34
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289 by Robertofg
Tue, 2022-11-22 00:34
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
290 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
0
292 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting.
by ldx022 » Thu, 2023-03-09 17:03
3
293 by ldx022
Sat, 2023-03-11 16:53
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
296 by rmoretti
Tue, 2022-09-06 08:13
Normal topic total_score changes when decomposing bb hbonds ref2015
by Liviu Copoiu » Mon, 2022-10-31 15:40
2
298 by Liviu Copoiu
Mon, 2022-10-31 16:03
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
1
299 by rmoretti
Wed, 2022-09-07 09:19
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
0
300 by Hyun
Tue, 2022-03-29 19:53
Normal topic clean_pdb_keep_ligand.py IndexError
by to-qinbin@163.com » Sat, 2022-09-10 04:04
1
303 by rmoretti
Mon, 2022-09-12 06:58
Normal topic No values for total score while running Rosetta score file.
by Shweata Maurya » Wed, 2023-02-01 02:05
4
306 by Shweata Maurya
Wed, 2023-02-08 03:19
Normal topic undefined symbol: ZN9CifString12UnknownValueE error meaning?
by aniyaz » Wed, 2023-01-04 08:37
3
318 by aniyaz
Wed, 2023-01-11 01:24
Normal topic Unexpected length of light chain FR1
by mgupta » Fri, 2022-12-09 01:03
0
321 by mgupta
Fri, 2022-12-09 01:03
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
1
321 by rmoretti
Tue, 2022-09-06 08:22
Normal topic pose.energies().total_enegies().show_nonzero() changes after packer is applied
by Liviu Copoiu » Mon, 2022-11-07 16:51
2
327 by Liviu Copoiu
Tue, 2022-11-08 10:43
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
328 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
329 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
1
329 by almeida85
Fri, 2022-08-12 05:56
Normal topic Using specific rotamers
by sahn97 » Fri, 2022-08-26 13:45
1
332 by rmoretti
Fri, 2022-08-26 14:51
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
0
334 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic Different dG_separated from RAbD and InterfaceAnalyzer
by brubin » Mon, 2022-12-19 13:58
2
352 by brubin
Tue, 2022-12-20 13:26
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
0
364 by guowuchen
Thu, 2022-06-23 04:43
Normal topic can't access rosetta commercial license download via given URL from CoMotion
by y_atsmonraz » Tue, 2023-02-14 11:04
8
374 by rmoretti
Thu, 2023-02-16 13:48
Normal topic Where is Sicdock application now? Can I find a substitute?
by JasonIsaac » Sun, 2022-11-13 03:41
3
375 by rmoretti
Mon, 2022-11-14 07:27
Normal topic Adding NCAA with Metal Ion
by MustafaBughio » Mon, 2022-11-28 15:07
1
396 by JasonIsaac
Mon, 2022-12-05 18:41
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
1
408 by rmoretti
Tue, 2022-06-28 11:06
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
1
410 by matteoferla
Thu, 2022-06-09 14:41
Normal topic GeneralizedKIC disulfide closure
by Ken » Tue, 2022-08-16 13:32
2
424 by Ken
Wed, 2022-08-17 08:04
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
1
425 by matteoferla
Fri, 2022-06-17 10:38
Normal topic ERROR: Unable to open weights/patch file
by almeida85 » Tue, 2022-08-09 05:33
2
431 by almeida85
Thu, 2022-08-11 00:32
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
0
432 by tlopes
Wed, 2022-01-05 18:19
Normal topic Save silent results to individual directory by process ID
by Payne » Sat, 2022-09-24 05:23
3
439 by rmoretti
Thu, 2022-09-29 00:15
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
1
441 by matteoferla
Wed, 2022-07-20 10:33
Normal topic Residue outside res_map range
by to-qinbin@163.com » Sat, 2022-09-10 01:56
1
441 by rmoretti
Mon, 2022-09-12 07:01
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
447 by rmoretti
Tue, 2022-08-09 06:52
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
1
455 by aneeqh
Fri, 2022-09-02 13:36
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
462 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
464 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
0
473 by Wenithor
Sat, 2021-10-09 07:23
Normal topic How to handle/retain Metals (Zn, Ca) inside the Protein?
by aniyaz » Wed, 2023-01-11 03:21
6
473 by rmoretti
Mon, 2023-02-20 16:07
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
476 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
479 by lsong2
Thu, 2021-11-18 10:31
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
486 by ajasja
Mon, 2022-05-23 07:19
Normal topic genkic mover produced an unwanted HN - CA bond
by cttm4a1 » Mon, 2022-06-20 14:25
2
486 by cttm4a1
Mon, 2022-06-20 16:58
Normal topic Renumbering PDB
by jgustat » Wed, 2022-07-27 13:37
2
489 by jgustat
Thu, 2022-07-28 10:00
Normal topic De Novo backbone generation vs Rosetta Match for enzdes and ligand binding.
by csvajda » Thu, 2022-06-30 09:55
2
496 by csvajda
Thu, 2022-06-30 16:26
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
0
499 by tisozaki
Tue, 2021-12-14 17:16

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