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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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by almeida85 Thu, 2023-05-25 06:18 |
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Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
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by mrosam Thu, 2023-05-25 05:14 |
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Changing amino acid profile while keeping the backbone conformation between 2 protein structures (need help) by seamoon » Wed, 2023-05-24 07:46 |
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by seamoon Wed, 2023-05-24 07:46 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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by chenna Sun, 2023-04-23 23:52 |
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Any general way to generate .params file for beta and gamma NCAA? by wwwmrzkwww » Wed, 2023-04-26 12:35 |
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by wwwmrzkwww Wed, 2023-04-26 12:35 |
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how to generate _prepro.rama file for a customized beta-amino acid residues? by wwwmrzkwww » Sun, 2023-04-23 14:25 |
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by wwwmrzkwww Sun, 2023-04-23 14:25 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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by JasonIsaac Tue, 2023-05-02 03:39 |
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Converting all residues to poly-Gly/Ala by jtpi6174 » Tue, 2023-05-09 14:14 |
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by jtpi6174 Tue, 2023-05-09 15:51 |
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Intel MPI: early exit due to job process stopped. by jackzzs » Mon, 2023-05-15 02:57 |
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by jackzzs Mon, 2023-05-15 03:17 |
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rosie github log in by YUANXU » Tue, 2023-04-25 20:13 |
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by Sergey Thu, 2023-04-27 12:03 |
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Error with residue selectors not counting indices correctly. by Wexter300 » Tue, 2023-04-04 11:04 |
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by ajasja Wed, 2023-04-05 00:20 |
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Error in H3_modeling_scores.fasc file from antibody_H3 program by Brian Wiley » Sat, 2023-02-04 23:41 |
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by Brian Wiley Sat, 2023-02-04 23:43 |
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Segmentation fault with nstruct > 1 by Brian Wiley » Sun, 2023-02-12 20:46 |
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by Brian Wiley Sun, 2023-02-12 20:46 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
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by xuezhi Wed, 2023-02-15 14:00 |
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ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction. by sia » Mon, 2023-05-08 06:36 |
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by rmoretti Tue, 2023-05-16 07:10 |
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Calculating SAP score using RosettaScripts by varunmc99 » Fri, 2023-05-12 11:03 |
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by varunmc99 Fri, 2023-05-12 11:49 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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by Zehui Zhou Wed, 2023-02-15 07:12 |
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Truncating a protein using rosetta by Wexter300 » Mon, 2023-02-13 12:05 |
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by Wexter300 Mon, 2023-02-13 13:04 |
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Should all input structures to energy_based_clustering have an output pdb file? by Brian Wiley » Mon, 2023-01-30 20:42 |
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by Brian Wiley Tue, 2023-01-31 19:08 |
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Grafting using antibody.mpi.linuxgccrelease , the modelled structure does not have constant region of the antibody. by SubhaK » Thu, 2023-01-26 21:29 |
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by rmoretti Mon, 2023-02-06 14:35 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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by JasonIsaac Wed, 2023-02-22 18:36 |
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Method for adding residues into PDB's w/ RosettaScripts. by Wexter300 » Wed, 2023-03-15 13:07 |
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by rmoretti Thu, 2023-03-16 11:46 |
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Error when trying to use xml script to design PDB by Wexter300 » Fri, 2023-02-24 13:29 |
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by rmoretti Fri, 2023-02-24 13:58 |
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Why are 'fa_rep' and 'fa_intra_rep' higher in 'ref2015_soft.wts' than in 'ref2015.wts'? by JW_24 » Tue, 2023-01-24 04:40 |
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by JW_24 Tue, 2023-01-24 14:52 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
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by rmoretti Mon, 2023-05-15 15:23 |
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Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
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by JW_24 Tue, 2023-01-24 04:55 |
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RuntimeError: CUDA out of memory. by ravi.thakkar » Tue, 2023-03-07 00:27 |
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by rmoretti Tue, 2023-03-07 08:18 |
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Run protein-protein docking parallelly by mpi by Zehui Zhou » Thu, 2023-02-02 06:23 |
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by Zehui Zhou Fri, 2023-02-03 05:51 |
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Error when attempting to relax pdb, "flag_input_relax" not found by Wexter300 » Mon, 2023-01-23 11:32 |
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by Wexter300 Wed, 2023-01-25 12:34 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
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by cttm4a1 Wed, 2022-09-07 23:41 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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by biotech Wed, 2022-10-26 11:17 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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by Proteinmechanic Fri, 2022-09-30 21:23 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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by cttm4a1 Wed, 2022-09-14 23:40 |
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Missing atoms, unable to fill in missing atoms by kwu030 » Fri, 2023-05-05 12:58 |
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by kwu030 Thu, 2023-05-18 08:31 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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by mrosam Mon, 2022-08-08 01:37 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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by liuwenxi Tue, 2022-08-09 08:33 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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by almeida85 Thu, 2022-11-17 01:04 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
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by NingNing Tue, 2022-08-09 17:36 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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by SebastianBB Mon, 2022-11-21 08:33 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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by He Xiao Mon, 2022-11-07 04:10 |
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GeneralizedKIC side chain closure. by almeida85 » Mon, 2022-09-19 06:13 |
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by almeida85 Mon, 2022-09-19 07:22 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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by ialvy Tue, 2022-08-30 00:00 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
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by JasonIsaac Sat, 2023-02-11 00:44 |
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Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
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by rmoretti Mon, 2023-01-30 08:04 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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by mb0261 Thu, 2022-06-30 10:48 |
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Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
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by rmoretti Mon, 2023-02-06 14:42 |
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Score function in protein-protein docking with constrains by Zehui Zhou » Mon, 2023-02-06 03:31 |
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by Zehui Zhou Wed, 2023-02-15 05:40 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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by Karthik Wed, 2022-07-13 23:45 |
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core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP by to-qinbin@163.com » Wed, 2022-09-14 06:06 |
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by rmoretti Wed, 2022-09-14 09:14 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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by csvajda Sat, 2022-08-13 08:08 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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by aastha.pal Mon, 2022-06-27 09:34 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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by JasonIsaac Mon, 2022-12-05 18:57 |
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Prepacking crashing using metalloprotein by mb0261 » Tue, 2022-12-06 10:16 |
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by mb0261 Tue, 2022-12-06 10:16 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
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by Robertofg Tue, 2022-11-22 00:34 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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by Zjq1998 Wed, 2022-06-15 23:54 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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by Delfosse57 Thu, 2022-12-01 20:40 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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by ldx022 Sat, 2023-03-11 16:53 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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by rmoretti Tue, 2022-09-06 08:13 |
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total_score changes when decomposing bb hbonds ref2015 by Liviu Copoiu » Mon, 2022-10-31 15:40 |
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by Liviu Copoiu Mon, 2022-10-31 16:03 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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by rmoretti Wed, 2022-09-07 09:19 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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by Hyun Tue, 2022-03-29 19:53 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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by rmoretti Mon, 2022-09-12 06:58 |
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No values for total score while running Rosetta score file. by Shweata Maurya » Wed, 2023-02-01 02:05 |
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by Shweata Maurya Wed, 2023-02-08 03:19 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
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by aniyaz Wed, 2023-01-11 01:24 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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by mgupta Fri, 2022-12-09 01:03 |
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Multiple Relax runnings by mb0261 » Sat, 2022-08-27 05:42 |
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by rmoretti Tue, 2022-09-06 08:22 |
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pose.energies().total_enegies().show_nonzero() changes after packer is applied by Liviu Copoiu » Mon, 2022-11-07 16:51 |
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by Liviu Copoiu Tue, 2022-11-08 10:43 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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by katherinemccoy Tue, 2022-03-29 14:26 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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by tonycheng1688 Mon, 2022-04-25 13:51 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
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by almeida85 Fri, 2022-08-12 05:56 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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by rmoretti Fri, 2022-08-26 14:51 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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by rlwoltz Fri, 2022-04-29 15:15 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
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by brubin Tue, 2022-12-20 13:26 |
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protein binder interface design error by guowuchen » Thu, 2022-06-23 04:43 |
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by guowuchen Thu, 2022-06-23 04:43 |
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can't access rosetta commercial license download via given URL from CoMotion by y_atsmonraz » Tue, 2023-02-14 11:04 |
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by rmoretti Thu, 2023-02-16 13:48 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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by rmoretti Mon, 2022-11-14 07:27 |
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Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
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by JasonIsaac Mon, 2022-12-05 18:41 |
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Problem with 'AddEncounterConstraintMover' by mb0261 » Tue, 2022-06-28 10:00 |
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by rmoretti Tue, 2022-06-28 11:06 |
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mol2genparams.py script dependencies by dhirajks » Wed, 2022-06-08 16:46 |
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410 |
by matteoferla Thu, 2022-06-09 14:41 |
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GeneralizedKIC disulfide closure by Ken » Tue, 2022-08-16 13:32 |
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by Ken Wed, 2022-08-17 08:04 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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by matteoferla Fri, 2022-06-17 10:38 |
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ERROR: Unable to open weights/patch file by almeida85 » Tue, 2022-08-09 05:33 |
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by almeida85 Thu, 2022-08-11 00:32 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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by tlopes Wed, 2022-01-05 18:19 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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by rmoretti Thu, 2022-09-29 00:15 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
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441 |
by matteoferla Wed, 2022-07-20 10:33 |
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Residue outside res_map range by to-qinbin@163.com » Sat, 2022-09-10 01:56 |
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441 |
by rmoretti Mon, 2022-09-12 07:01 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
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447 |
by rmoretti Tue, 2022-08-09 06:52 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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by aneeqh Fri, 2022-09-02 13:36 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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462 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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by hanzhiz Thu, 2021-12-16 09:18 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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by Wenithor Sat, 2021-10-09 07:23 |
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How to handle/retain Metals (Zn, Ca) inside the Protein? by aniyaz » Wed, 2023-01-11 03:21 |
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by rmoretti Mon, 2023-02-20 16:07 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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by hanzhiz Thu, 2021-12-16 09:32 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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479 |
by lsong2 Thu, 2021-11-18 10:31 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
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486 |
by ajasja Mon, 2022-05-23 07:19 |
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genkic mover produced an unwanted HN - CA bond by cttm4a1 » Mon, 2022-06-20 14:25 |
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486 |
by cttm4a1 Mon, 2022-06-20 16:58 |
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Renumbering PDB by jgustat » Wed, 2022-07-27 13:37 |
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489 |
by jgustat Thu, 2022-07-28 10:00 |
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De Novo backbone generation vs Rosetta Match for enzdes and ligand binding. by csvajda » Thu, 2022-06-30 09:55 |
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496 |
by csvajda Thu, 2022-06-30 16:26 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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499 |
by tisozaki Tue, 2021-12-14 17:16 |
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