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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
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by Delfosse57 Thu, 2022-05-19 21:47 |
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RNA update library by Anne Klein » Mon, 2022-05-16 16:04 |
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by rmoretti Tue, 2022-05-17 08:06 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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by rlwoltz Fri, 2022-04-29 15:15 |
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RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
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by guowuchen Thu, 2022-05-05 06:20 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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63 |
by e3lm Fri, 2022-05-06 16:10 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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by Hyun Tue, 2022-03-29 19:53 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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by tonycheng1688 Mon, 2022-04-25 13:51 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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by katherinemccoy Tue, 2022-03-29 14:26 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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by amcallister Fri, 2022-04-22 11:26 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
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77 |
by rmoretti Thu, 2022-04-07 07:51 |
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AddMembrane Mover Segmentation Fault by csvajda » Thu, 2022-04-14 14:02 |
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by csvajda Thu, 2022-04-14 14:02 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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86 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
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by LanMei Tue, 2022-03-22 20:45 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
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148 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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by rjacak Thu, 2022-03-31 10:53 |
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RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
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by guowuchen Wed, 2022-03-30 04:20 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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by hanzhiz Thu, 2021-12-16 09:32 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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by tlopes Wed, 2022-01-05 18:19 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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by hanzhiz Thu, 2021-12-16 09:18 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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by tisozaki Tue, 2021-12-14 17:16 |
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Rosetta-foldtree and docking by tingting » Tue, 2022-03-15 22:49 |
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by rmoretti Thu, 2022-03-17 08:30 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
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by protein_fan Fri, 2022-04-15 17:41 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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by vmulligan Thu, 2022-03-03 18:48 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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by Wenithor Sat, 2021-10-09 07:23 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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by lsong2 Thu, 2021-11-18 10:31 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
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by csvajda Mon, 2022-03-07 07:46 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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by rmoretti Fri, 2022-02-18 11:14 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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by Soler Sat, 2022-01-15 22:09 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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277 |
by jadolfbr Sat, 2022-02-12 23:16 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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284 |
by ajasja Thu, 2021-11-18 00:33 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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by Soler Sat, 2021-11-20 23:41 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
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by gezmi Sat, 2021-11-06 15:26 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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by rohi Fri, 2021-06-25 10:29 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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326 |
by Antonia Wed, 2021-06-16 12:30 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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by CameronJA Mon, 2021-06-14 16:12 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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by ate Wed, 2021-06-16 19:19 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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by cryosky Sun, 2021-09-26 13:24 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
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by matteoferla Mon, 2021-12-13 02:27 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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by rmoretti Tue, 2021-11-30 07:41 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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by dkesar Fri, 2021-06-04 19:09 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
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by Kihang _Youn Thu, 2022-03-10 16:30 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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by cryosky Fri, 2021-09-17 22:04 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
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by lanselibai Wed, 2021-06-23 14:53 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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408 |
by whiteqiu Mon, 2021-03-01 18:32 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
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by nannemdp Sun, 2021-06-06 09:26 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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by Corvin Wed, 2021-05-19 07:54 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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438 |
by rvandamme Mon, 2021-02-01 13:39 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
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440 |
by taylorjones Wed, 2021-06-09 16:30 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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by Elijah_Hix Thu, 2021-09-23 10:13 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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by pedro.guillem Thu, 2020-07-23 03:45 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
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465 |
by hong wei Thu, 2021-11-25 02:46 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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by rlwoltz Tue, 2021-08-03 23:26 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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by pci112 Mon, 2021-04-12 08:12 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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by rohi Mon, 2021-03-15 06:31 |
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ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
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482 |
by matteoferla Thu, 2021-10-07 09:31 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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485 |
by jeanramos Mon, 2020-07-13 00:56 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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485 |
by rmoretti Wed, 2021-06-23 02:17 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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487 |
by ate Sat, 2021-05-01 02:22 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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487 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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by pedro.guillem Thu, 2020-05-14 04:22 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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492 |
by asbelx Wed, 2021-09-08 23:19 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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by matteoferla Fri, 2021-02-26 07:12 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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by Sunidhi Sun, 2020-11-01 11:01 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
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501 |
by ericlang Mon, 2021-07-05 06:59 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
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503 |
by lanselibai Wed, 2021-06-23 13:21 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
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505 |
by lanselibai Thu, 2021-06-24 10:16 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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506 |
by adityapadhi Wed, 2020-06-24 01:29 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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by pedro.guillem Wed, 2020-06-24 04:42 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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512 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
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515 |
by rmoretti Wed, 2021-07-14 07:07 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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516 |
by michelleqyh Fri, 2020-08-21 09:00 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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517 |
by patcD Wed, 2021-09-01 06:54 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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520 |
by matteoferla Wed, 2020-07-22 03:08 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
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521 |
by diasmarieli Fri, 2021-11-26 05:11 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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529 |
by zivben Sat, 2021-07-31 08:16 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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531 |
by matteoferla Tue, 2020-07-14 01:51 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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532 |
by ahuls1 Thu, 2021-07-29 13:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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532 |
by ate Sat, 2021-05-01 02:52 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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533 |
by matteoferla Thu, 2021-04-01 04:06 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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535 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
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539 |
by matteoferla Thu, 2021-09-02 03:50 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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541 |
by haom Tue, 2020-09-01 18:50 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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548 |
by chrisHKL Mon, 2020-02-17 09:12 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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549 |
by LTJ Mon, 2020-07-06 14:13 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
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552 |
by matteoferla Mon, 2021-07-12 02:23 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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553 |
by kalabharath Mon, 2020-06-29 06:59 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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556 |
by YuFei Wed, 2020-04-22 17:27 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
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565 |
by rmoretti Fri, 2021-05-28 08:54 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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566 |
by nferruz Fri, 2020-08-28 06:05 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
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567 |
by matteoferla Mon, 2021-08-09 01:53 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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569 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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569 |
by rmoretti Tue, 2021-02-09 10:29 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
3 |
573 |
by matteoferla Mon, 2022-01-10 06:44 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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576 |
by rmoretti Tue, 2021-04-20 13:06 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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584 |
by haom Wed, 2020-09-09 09:19 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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588 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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589 |
by Kazu Wed, 2020-05-20 11:58 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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602 |
by rohi Thu, 2020-10-15 10:28 |
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