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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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by smlewis Wed, 2021-09-22 13:12 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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by cryosky Fri, 2021-09-17 22:04 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
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by matteoferla Mon, 2021-09-20 06:05 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
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by lanselibai Wed, 2021-06-23 14:53 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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by rohi Fri, 2021-06-25 10:29 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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by Antonia Wed, 2021-06-16 12:30 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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by ate Wed, 2021-06-16 19:19 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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by patcD Wed, 2021-09-01 06:54 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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by CameronJA Mon, 2021-06-14 16:12 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
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by lanselibai Thu, 2021-06-24 10:16 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
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by lanselibai Wed, 2021-06-23 13:21 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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by dkesar Fri, 2021-06-04 19:09 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
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by ericlang Mon, 2021-07-05 06:59 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
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by nannemdp Sun, 2021-06-06 09:26 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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by rmoretti Wed, 2021-06-23 02:17 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
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by taylorjones Wed, 2021-06-09 16:30 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
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by sgaray Fri, 2021-06-25 11:26 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
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by matteoferla Mon, 2021-07-12 02:23 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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by asbelx Wed, 2021-09-08 23:19 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
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by matteoferla Thu, 2021-09-02 03:50 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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by madammolecular Mon, 2021-02-01 22:41 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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by whiteqiu Mon, 2021-03-01 18:32 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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by rlwoltz Tue, 2021-08-03 23:26 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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by rohi Mon, 2021-03-15 06:31 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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by ahuls1 Thu, 2021-07-29 13:23 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
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by rmoretti Wed, 2021-07-14 07:07 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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by matteoferla Fri, 2021-02-26 07:12 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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by Corvin Wed, 2021-05-19 07:54 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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by matteoferla Thu, 2021-04-01 04:06 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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by matteoferla Fri, 2021-08-20 08:37 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
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by rmoretti Fri, 2021-05-28 08:54 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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by rvandamme Mon, 2021-02-01 13:39 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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by pci112 Mon, 2021-04-12 08:12 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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by zivben Sat, 2021-07-31 08:16 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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by ate Sat, 2021-05-01 02:22 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
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by matteoferla Mon, 2021-08-09 01:53 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
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by matteoferla Thu, 2021-06-03 08:24 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
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by vmulligan Wed, 2021-04-28 14:20 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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by ate Sat, 2021-05-01 02:52 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
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by rmoretti Tue, 2021-04-13 06:42 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
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by rmoretti Wed, 2021-02-03 14:45 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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by matteoferla Mon, 2021-03-22 08:29 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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by rmoretti Tue, 2021-04-20 13:06 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
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by Victor Tobiasson Thu, 2021-05-13 08:33 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
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by rmoretti Thu, 2021-06-24 12:23 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
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by MarkusAurelius Mon, 2021-03-29 09:06 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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by pedro.guillem Thu, 2020-07-23 03:45 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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by rmoretti Tue, 2021-02-09 10:29 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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by Sunidhi Sun, 2020-11-01 11:01 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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by taylorjones Mon, 2021-04-05 13:17 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
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by MarkusAurelius Fri, 2021-04-02 11:44 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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by michelleqyh Fri, 2020-08-21 09:00 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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by matteoferla Wed, 2020-07-22 03:08 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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by rmoretti Wed, 2021-01-20 07:39 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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by Kotimedidhi Mon, 2020-06-22 08:10 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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by jeanramos Mon, 2020-07-13 00:56 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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by pedro.guillem Thu, 2020-05-14 04:22 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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by adityapadhi Wed, 2020-06-24 01:29 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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by rmoretti Tue, 2021-02-09 10:48 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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by pedro.guillem Wed, 2020-06-24 04:42 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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by karolcia1010 Wed, 2020-06-17 11:19 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
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by rmoretti Tue, 2021-02-09 09:37 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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by matteoferla Tue, 2020-07-14 01:51 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
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by rmoretti Wed, 2021-03-17 13:52 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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by Osmany Guirola Mon, 2020-05-11 04:52 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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by rohi Thu, 2020-10-15 10:28 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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by haom Tue, 2020-09-01 18:50 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
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by almeida85 Mon, 2021-02-08 09:50 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
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by duz Thu, 2021-04-01 09:34 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
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by pci112 Thu, 2021-03-25 01:44 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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by LTJ Mon, 2020-07-06 14:13 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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by aloshbau Tue, 2021-03-09 02:47 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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429 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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by kalabharath Mon, 2020-06-29 06:59 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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by chrisHKL Mon, 2020-02-17 09:12 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
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by tttt Wed, 2021-03-03 09:22 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
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431 |
by danpf Mon, 2021-05-10 10:04 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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by YuFei Wed, 2020-04-22 17:27 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
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by brownbp1 Tue, 2021-02-09 12:12 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
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by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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by hltorresvera Tue, 2021-02-09 10:44 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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by haom Wed, 2020-09-09 09:19 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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by nferruz Fri, 2020-08-28 06:05 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
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by szcshr123 Fri, 2021-02-26 14:41 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
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by zhoubin Mon, 2021-03-01 22:11 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
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459 |
by rlwoltz Wed, 2021-03-24 22:36 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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by Kazu Wed, 2020-05-20 11:58 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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by zahra_AZ Mon, 2020-11-09 02:23 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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by rmoretti Tue, 2021-02-09 12:25 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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by jmaly Wed, 2020-09-02 16:16 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
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by rmoretti Tue, 2021-02-09 12:02 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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by dgront Thu, 2021-02-11 08:30 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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by Danielsebas Tue, 2019-09-24 05:03 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
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by LeonhardJS Fri, 2021-01-29 01:12 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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by matteoferla Fri, 2020-04-10 02:40 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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509 |
by yinasun Fri, 2019-07-26 02:17 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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510 |
by matteoferla Sun, 2020-03-22 05:29 |
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