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Rosetta 3 - General

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Sticky topic Sticky: FAQ
by admin » Mon, 2010-08-30 04:16
0
7,353 by admin
Fri, 2015-09-04 16:17
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
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30 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic Adding NCAA with Metal Ion
by MustafaBughio » Mon, 2022-11-28 15:07
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48 by MustafaBughio
Mon, 2022-11-28 15:07
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
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76 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
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87 by almeida85
Thu, 2022-11-17 01:04
Normal topic Loop modeling
by Robertofg » Tue, 2022-11-22 00:34
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99 by Robertofg
Tue, 2022-11-22 00:34
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
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107 by biotech
Wed, 2022-10-26 11:17
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
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115 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
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115 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
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117 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
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119 by He Xiao
Mon, 2022-11-07 04:10
Normal topic total_score changes when decomposing bb hbonds ref2015
by Liviu Copoiu » Mon, 2022-10-31 15:40
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122 by Liviu Copoiu
Mon, 2022-10-31 16:03
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
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124 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic Interface scores comparison
by NingNing » Tue, 2022-08-09 17:36
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126 by NingNing
Tue, 2022-08-09 17:36
Normal topic GeneralizedKIC side chain closure.
by almeida85 » Mon, 2022-09-19 06:13
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126 by almeida85
Mon, 2022-09-19 07:22
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
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126 by mrosam
Mon, 2022-08-08 01:37
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
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130 by csvajda
Sat, 2022-08-13 08:08
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
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138 by ialvy
Tue, 2022-08-30 00:00
Normal topic core.pack.rotamer_set.RotamerSet_: (0) Using simple Rotamer generation logic for pdb_NAP
by to-qinbin@163.com » Wed, 2022-09-14 06:06
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140 by rmoretti
Wed, 2022-09-14 09:14
Normal topic Where is Sicdock application now? Can I find a substitute?
by JasonIsaac » Sun, 2022-11-13 03:41
3
145 by rmoretti
Mon, 2022-11-14 07:27
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
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148 by rmoretti
Tue, 2022-09-06 08:13
Normal topic Sequence symmetry during FastDesign for repeat protein design
by cttm4a1 » Tue, 2022-09-06 21:02
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152 by rmoretti
Wed, 2022-09-07 09:19
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
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156 by mb0261
Thu, 2022-06-30 10:48
Normal topic clean_pdb_keep_ligand.py IndexError
by to-qinbin@163.com » Sat, 2022-09-10 04:04
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156 by rmoretti
Mon, 2022-09-12 06:58
Normal topic pose.energies().total_enegies().show_nonzero() changes after packer is applied
by Liviu Copoiu » Mon, 2022-11-07 16:51
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163 by Liviu Copoiu
Tue, 2022-11-08 10:43
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
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169 by Karthik
Wed, 2022-07-13 23:45
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
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173 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic Using specific rotamers
by sahn97 » Fri, 2022-08-26 13:45
1
179 by rmoretti
Fri, 2022-08-26 14:51
Normal topic Multiple Relax runnings
by mb0261 » Sat, 2022-08-27 05:42
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187 by rmoretti
Tue, 2022-09-06 08:22
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
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191 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
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193 by almeida85
Fri, 2022-08-12 05:56
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
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199 by Hyun
Tue, 2022-03-29 19:53
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
199 by rmoretti
Tue, 2022-08-09 06:52
Normal topic ERROR: Unable to open weights/patch file
by almeida85 » Tue, 2022-08-09 05:33
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202 by almeida85
Thu, 2022-08-11 00:32
Normal topic protein binder interface design error
by guowuchen » Thu, 2022-06-23 04:43
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203 by guowuchen
Thu, 2022-06-23 04:43
Normal topic What is virtual atom means in a params file and how to generate it?
by JasonIsaac » Fri, 2022-11-04 04:53
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213 by JasonIsaac
Mon, 2022-11-07 19:15
Normal topic Residue outside res_map range
by to-qinbin@163.com » Sat, 2022-09-10 01:56
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215 by rmoretti
Mon, 2022-09-12 07:01
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
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216 by tonycheng1688
Mon, 2022-04-25 13:51
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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219 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
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228 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Save silent results to individual directory by process ID
by Payne » Sat, 2022-09-24 05:23
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233 by rmoretti
Thu, 2022-09-29 00:15
Normal topic GeneralizedKIC disulfide closure
by Ken » Tue, 2022-08-16 13:32
2
241 by Ken
Wed, 2022-08-17 08:04
Normal topic Problem with 'AddEncounterConstraintMover'
by mb0261 » Tue, 2022-06-28 10:00
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256 by rmoretti
Tue, 2022-06-28 11:06
Normal topic mol2genparams.py script dependencies
by dhirajks » Wed, 2022-06-08 16:46
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269 by matteoferla
Thu, 2022-06-09 14:41
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
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269 by matteoferla
Fri, 2022-06-17 10:38
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
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274 by mb0261
Mon, 2022-09-26 07:50
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
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283 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic genkic mover produced an unwanted HN - CA bond
by cttm4a1 » Mon, 2022-06-20 14:25
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292 by cttm4a1
Mon, 2022-06-20 16:58
Normal topic Renumbering PDB
by jgustat » Wed, 2022-07-27 13:37
2
293 by jgustat
Thu, 2022-07-28 10:00
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
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296 by matteoferla
Wed, 2022-07-20 10:33
Normal topic De Novo backbone generation vs Rosetta Match for enzdes and ligand binding.
by csvajda » Thu, 2022-06-30 09:55
2
303 by csvajda
Thu, 2022-06-30 16:26
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
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308 by aneeqh
Fri, 2022-09-02 13:36
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
335 by ajasja
Mon, 2022-05-23 07:19
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
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340 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
340 by jgustat
Fri, 2022-07-01 13:26
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
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346 by rmoretti
Mon, 2022-07-18 11:56
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
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348 by tlopes
Wed, 2022-01-05 18:19
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
352 by almeida85
Thu, 2022-08-11 00:29
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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356 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
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363 by tisozaki
Tue, 2021-12-14 17:16
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
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364 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
374 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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385 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
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387 by lsong2
Thu, 2021-11-18 10:31
Normal topic RNA update library
by Anne Klein » Mon, 2022-05-16 16:04
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404 by Anne Klein
Tue, 2022-05-24 21:38
Normal topic Rosetta for design of artifical metalloenzyme
by Delfosse57 » Thu, 2022-05-19 21:47
1
411 by matteoferla
Fri, 2022-06-03 01:09
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
416 by asbelx
Mon, 2022-06-06 23:15
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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421 by Soler
Sat, 2022-01-15 22:09
Normal topic -ignore_unrecognized_res doesn't work
by e3lm » Fri, 2022-05-06 14:47
2
433 by e3lm
Fri, 2022-05-06 16:10
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
443 by vmulligan
Thu, 2022-03-03 18:48
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
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448 by ate
Wed, 2021-06-16 19:19
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
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448 by Soler
Sat, 2021-11-20 23:41
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
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449 by sia
Tue, 2022-07-05 05:47
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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450 by Antonia
Wed, 2021-06-16 12:30
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
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461 by CameronJA
Mon, 2021-06-14 16:12
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
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462 by rohi
Fri, 2021-06-25 10:29
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
468 by LanMei
Tue, 2022-03-22 20:45
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
472 by rjacak
Thu, 2022-03-31 10:53
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
484 by ssrb
Tue, 2022-07-05 11:07
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
492 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
0
501 by cryosky
Sun, 2021-09-26 13:24
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
502 by dkesar
Fri, 2021-06-04 19:09
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
514 by ajasja
Thu, 2021-11-18 00:33
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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516 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
1
532 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic I_sc
by Soler » Sat, 2022-02-12 00:16
1
537 by rmoretti
Fri, 2022-02-18 11:14
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
0
544 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
552 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
565 by Corvin
Wed, 2021-05-19 07:54
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
571 by rvandamme
Mon, 2021-02-01 13:39
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
572 by gezmi
Sat, 2021-11-06 15:26
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
585 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
589 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
592 by jeanramos
Mon, 2020-07-13 00:56
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
596 by rmoretti
Tue, 2021-11-30 07:41
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
597 by pci112
Mon, 2021-04-12 08:12
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
608 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
611 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
611 by lanselibai
Wed, 2021-06-23 14:53
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
612 by matteoferla
Mon, 2021-12-13 02:27

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