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Rosetta 3 - General
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FAQ by admin » Mon, 2010-08-30 04:16 |
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by admin Fri, 2015-09-04 16:17 |
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protein docking question (Page: 1, 2)
by bo » Tue, 2012-07-24 13:19 |
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48,533 |
by rmoretti Fri, 2015-07-03 13:29 |
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Re: Using a database of loop conformations together with de novo folding protocol (Page: 1, 2)
by bharat_46010 » Mon, 2013-03-25 01:47 |
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43,816 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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ddg energy components by japgar » Tue, 2010-07-13 13:20 |
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32,469 |
by smlewis Mon, 2014-04-21 06:47 |
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protein design question by bo » Fri, 2012-08-24 10:41 |
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26,818 |
by jyy Wed, 2019-02-20 00:30 |
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Re: Multigraft by bharat_46010 » Wed, 2011-12-07 17:24 |
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25,829 |
by rmoretti Mon, 2014-04-21 06:47 |
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problems with terminal caps by omirus » Tue, 2013-06-25 08:55 |
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23,062 |
by omirus Mon, 2014-04-21 06:48 |
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how to make benchmark? by albumns » Wed, 2012-04-04 05:23 |
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23,029 |
by rmoretti Mon, 2014-04-21 06:47 |
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Speeding up docking to a large complex by skovacs » Thu, 2012-05-10 20:50 |
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22,393 |
by smlewis Mon, 2014-04-21 06:47 |
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RNA Denovo RMSD data by eremma » Thu, 2012-08-02 01:40 |
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21,407 |
by eremma Mon, 2014-04-21 06:47 |
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mpi / jd2 with AbinitioRelax and relax (3.2) by smg3d » Wed, 2011-02-09 10:39 |
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19,891 |
by Gaurav_kumar Mon, 2014-04-21 06:47 |
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about constraints by jiongzhang » Wed, 2011-02-23 15:59 |
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19,808 |
by rmoretti Wed, 2015-02-18 09:23 |
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SCons compilation error (Windows XP, 32bit) by CRickert » Mon, 2009-08-03 00:57 |
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19,059 |
by Marsia Mon, 2014-04-21 06:47 |
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Can't make NCAA's and D-aminoacids work by jarek » Fri, 2012-10-26 09:10 |
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18,922 |
by rmoretti Mon, 2014-04-21 06:47 |
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Fix back bone design fixbb by Lindsay » Tue, 2012-03-06 12:30 |
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18,075 |
by Anonymous Mon, 2014-04-21 06:47 |
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Is it possible to do alanine scanning in Rosetta 3.2.1.? by monos_morpheus » Tue, 2011-04-12 02:36 |
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17,545 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling phosphate ion binding site in protein. by bharat_46010 » Tue, 2011-05-17 19:08 |
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16,884 |
by rmoretti Mon, 2014-04-21 06:47 |
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ERROR: Option matching -s not found in command line top-level context by xxx » Wed, 2011-04-20 05:38 |
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16,418 |
by rmoretti Mon, 2014-04-21 06:47 |
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loop model error by albumns » Sun, 2011-04-03 00:26 |
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15,877 |
by rmoretti Fri, 2015-12-18 14:26 |
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New parametrization problems by DmitriiN » Wed, 2016-06-08 05:09 |
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15,464 |
by smlewis Tue, 2016-06-28 09:05 |
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Collecting 3.2 documentation holes by smlewis » Wed, 2011-01-26 10:39 |
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15,336 |
by FrankVerdin86 Mon, 2014-04-21 06:47 |
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Submit job in parallel : MPI and jd2 ? by anusmita_sahoo » Wed, 2010-03-31 00:18 |
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15,151 |
by jadolfbr Wed, 2014-05-14 08:51 |
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Rosetta3 Tutorials by smlewis » Fri, 2011-11-18 07:33 |
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15,132 |
by rmoretti Tue, 2019-07-09 10:24 |
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Conversion from Dihedral angle representation to Cartesian representation by rodrigo.faccioli » Sat, 2012-02-25 11:57 |
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15,106 |
by charlie.strauss Fri, 2016-09-02 10:08 |
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Moving Rosetta to C++11 standard by smlewis » Wed, 2012-02-29 12:30 |
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14,994 |
by rmoretti Sat, 2015-09-05 12:10 |
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packstat in InterfaceAnalyzer by Anonymous » Mon, 2012-08-20 03:19 |
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14,916 |
by Anonymous Mon, 2014-04-21 06:47 |
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How to obtain alignment file for comparative modeling under Rosetta 3.1? by lennylv » Tue, 2010-05-25 01:29 |
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14,691 |
by sabine Mon, 2014-04-21 06:47 |
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Histidine protonation by DmitriiN » Mon, 2016-09-26 13:15 |
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13,866 |
by rmoretti Mon, 2018-01-15 15:37 |
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Creating centroid patches for Proline (pro_hydroxylated_case1 and pro_hydroxylated_case2) by skovacs » Thu, 2012-05-10 20:10 |
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13,813 |
by aaj Fri, 2016-04-22 15:20 |
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how to make a combined PDB file? by fenghc » Mon, 2013-04-01 06:27 |
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13,620 |
by smlewis Mon, 2014-04-21 06:47 |
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membrane abinitio on heteromultimeric complexes by omirus » Fri, 2013-04-26 14:48 |
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13,453 |
by pledor Mon, 2014-04-21 06:47 |
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talaris2013 energy terms modifications by peony » Sat, 2013-11-23 02:48 |
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13,391 |
by rmoretti Mon, 2014-04-21 06:48 |
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RE: Loop Modeling and Beta-strand design by bharat_46010 » Sun, 2012-02-12 16:34 |
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13,364 |
by smlewis Mon, 2014-04-21 06:47 |
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minirosetta segmentation fault by sabine » Wed, 2013-12-11 13:08 |
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13,200 |
by rmoretti Tue, 2014-11-11 13:56 |
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Ab Initio Modelling of Protein with Small-Molecule Cofactor by jurkm » Thu, 2011-03-10 06:56 |
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12,972 |
by jseco Mon, 2021-03-08 03:46 |
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Steps to use D-amino acids by tevang » Mon, 2012-09-10 15:42 |
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12,954 |
by tevang Mon, 2014-04-21 06:47 |
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problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1 by Marsia » Thu, 2010-07-22 22:49 |
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12,656 |
by smlewis Mon, 2014-04-21 06:47 |
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How to extract specific pdb from silent files by eunwook » Tue, 2013-05-14 05:29 |
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12,633 |
by nawsad Mon, 2014-04-21 06:47 |
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modified Serine: FoldTree::reorder( 1 ) failed, new/old edge_list_ size mismatch error by Karol » Wed, 2016-05-04 08:47 |
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12,095 |
by smlewis Tue, 2016-05-17 08:06 |
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protein interface design for multi-chain complex by jarod » Sun, 2013-05-05 23:18 |
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11,979 |
by rmoretti Mon, 2014-04-21 06:47 |
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ERROR when run prepacking pdbfile in Rosetta 3.4 by phanvy » Thu, 2014-04-17 00:04 |
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11,844 |
by phanvy Wed, 2014-06-18 07:50 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
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11,527 |
by smlewis Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
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11,503 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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11,368 |
by rmoretti Mon, 2014-04-21 06:47 |
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make_fragment.pl Error! by Apiwat » Sat, 2014-02-15 13:35 |
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11,277 |
by Apiwat Tue, 2014-03-11 09:42 |
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high resolution protein docking doesn't work by albumns » Thu, 2010-12-02 02:36 |
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11,256 |
by albumns Mon, 2014-04-21 06:47 |
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Ligand Docking Positive Control: wt ligand by Basantab » Thu, 2011-10-27 13:36 |
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11,081 |
by Basantab Mon, 2014-04-21 06:47 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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10,931 |
by lanselibai Tue, 2015-02-10 14:03 |
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Error when running FRAGMENT generation by phanvy » Sat, 2014-09-20 17:53 |
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10,855 |
by rmoretti Mon, 2014-10-06 16:50 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
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10,804 |
by saxen Mon, 2014-04-21 06:47 |
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AB INITIO WITH METALLOPROTEIN by kaue » Sun, 2012-06-17 14:04 |
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10,262 |
by masterofpuppets Tue, 2015-02-10 01:33 |
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how to design a protein complex by Lindsay » Tue, 2013-11-05 20:24 |
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10,237 |
by Lindsay Mon, 2014-04-21 06:48 |
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fragment_picker problem by adva » Tue, 2012-12-18 01:15 |
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10,139 |
by sabine Mon, 2014-04-21 06:47 |
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Rosetta 3.1 compile error, Linux 32 bit by viochemist » Thu, 2010-07-29 08:40 |
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10,128 |
by smlewis Mon, 2014-04-21 06:47 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
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9,970 |
by smlewis Mon, 2014-04-21 06:47 |
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Anyone here knows what is the protocol capture archive???????!! by MajorID » Thu, 2011-06-02 01:50 |
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9,828 |
by rmoretti Fri, 2015-04-24 12:15 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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9,826 |
by smlewis Mon, 2014-04-21 06:47 |
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How to do ab initio with fixed part of protein by eunwook » Tue, 2013-04-16 03:00 |
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9,770 |
by rmoretti Mon, 2014-04-21 06:47 |
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flexible backbone design (fixbb+relax) by sdh_h » Mon, 2013-02-04 03:19 |
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9,433 |
by gsmurphy Mon, 2014-04-21 06:47 |
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Energy Calculation in Rosetta3.4 by sdg_lab » Thu, 2012-04-12 04:49 |
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9,343 |
by rmoretti Mon, 2014-04-21 06:47 |
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lysine-aspartate isopeptide bond by matteoferla » Tue, 2016-11-01 10:54 |
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9,230 |
by ablakely7 Wed, 2019-09-11 15:33 |
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How to put rdc data in refinement protocol? by zhisheng » Tue, 2012-11-20 03:55 |
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9,180 |
by rmoretti Mon, 2014-04-21 06:47 |
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Modeling circular permutation and domain insertion by bharat_46010 » Sun, 2011-04-10 19:54 |
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9,164 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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Warning when running cluster program by Anonymous » Fri, 2012-06-15 02:39 |
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9,163 |
by Anonymous Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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9,149 |
by jurkm Mon, 2014-04-21 06:47 |
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Change in binding energy after mutation in interface? by cossio » Mon, 2014-12-01 06:27 |
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9,113 |
by rmoretti Thu, 2015-04-30 16:25 |
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nr.fasta by silvia » Wed, 2013-01-23 10:08 |
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9,109 |
by dgront Mon, 2014-04-21 06:47 |
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How to calculate the binding energy of peptide and a protein? by tianbu » Thu, 2014-02-13 20:44 |
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9,028 |
by tianbu Mon, 2014-02-17 03:36 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
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8,934 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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what is minirosetta by Lindsay » Tue, 2012-04-10 07:48 |
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8,931 |
by Lindsay Mon, 2014-04-21 06:47 |
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Modeling of a Multi-Domain Dimer by jurkm » Mon, 2011-08-29 01:39 |
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8,868 |
by jurkm Mon, 2014-04-21 06:47 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
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8,761 |
by rmoretti Tue, 2019-07-09 12:50 |
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Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
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8,752 |
by G Mustafa Fri, 2021-09-10 08:20 |
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fixbb minimize sidechains with symmetric pose - recompile? by Anonymous » Wed, 2012-08-22 06:14 |
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8,744 |
by jadolfbr Mon, 2014-04-21 06:47 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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8,692 |
by rmoretti Mon, 2014-04-21 06:47 |
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about Residue Number in Rosetta by jiongzhang » Mon, 2012-06-11 14:58 |
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8,665 |
by smlewis Mon, 2014-04-21 06:47 |
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energy minimization of loop only by jtmacd » Wed, 2011-01-12 07:09 |
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8,598 |
by lanselibai Wed, 2014-10-15 01:41 |
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-dock_pert problem by mahajanr » Mon, 2010-07-19 15:45 |
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8,571 |
by weitzner Mon, 2014-04-21 06:47 |
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latest version of rosetta--unable to build models by pramod » Mon, 2014-11-03 11:40 |
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8,528 |
by jadolfbr Wed, 2014-11-26 11:40 |
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MPI stall by jadolfbr » Thu, 2013-10-10 18:59 |
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8,467 |
by jadolfbr Mon, 2014-04-21 06:48 |
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Constraints in Loop Modeling by Julix » Wed, 2012-12-05 07:08 |
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8,455 |
by rmoretti Mon, 2014-04-21 06:47 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
3 |
8,432 |
by rmoretti Mon, 2015-02-09 09:09 |
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Copying angles (pose.set_phi()) from a substructure with the same sequence to pose doesn't produce the exact same substructure? by resiros » Wed, 2012-08-22 07:20 |
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8,411 |
by smlewis Mon, 2014-04-21 06:47 |
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relax structure before design? by Lindsay » Tue, 2013-11-05 20:50 |
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8,169 |
by rmoretti Mon, 2014-04-21 06:48 |
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RosettaMatch by jtmacd » Wed, 2012-01-11 06:50 |
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8,079 |
by jtmacd Mon, 2014-04-21 06:47 |
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fragment-based loop modeling to get a helix at the loop site by berk » Wed, 2013-05-29 06:00 |
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7,967 |
by rmoretti Mon, 2014-04-21 06:47 |
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memory issue rosetta3.4 scripts by ast » Mon, 2013-01-28 06:25 |
8 |
7,931 |
by smlewis Mon, 2014-04-21 06:47 |
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How to run Rosetta3 in parallel by lennylv » Mon, 2009-03-30 04:21 |
6 |
7,926 |
by rmoretti Mon, 2014-04-21 06:47 |
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How do you implement phosphoserine in ab -initio folding? by smiruthi » Fri, 2011-12-16 14:45 |
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7,908 |
by brspurri Mon, 2014-04-21 06:47 |
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Submitting job to local cluster by tusharranjanmoharana » Fri, 2016-04-15 01:38 |
8 |
7,724 |
by rmoretti Mon, 2016-05-09 09:23 |
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Error when renumbering PDB by dzhao » Wed, 2012-07-18 01:03 |
7 |
7,663 |
by rmoretti Mon, 2014-04-21 06:47 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
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7,653 |
by rmoretti Thu, 2017-02-02 08:32 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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7,651 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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7,649 |
by xpzhang Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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7,625 |
by smlewis Mon, 2014-04-21 06:47 |
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Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
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7,609 |
by rfieldhouse Mon, 2014-04-21 06:47 |
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Rosetta reference energy by Lindsay » Mon, 2012-05-07 07:56 |
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7,607 |
by Lindsay Mon, 2014-04-21 06:47 |
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AbinitioRelax with very small peptides by jamsmad » Tue, 2012-09-04 13:45 |
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7,573 |
by jamsmad Mon, 2014-04-21 06:47 |
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acceptable RMSD value in the clustered structures? by ritacc18 » Wed, 2013-06-19 14:53 |
3 |
7,570 |
by rmoretti Mon, 2014-04-21 06:48 |
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How to input constraints? by violetsha7 » Wed, 2009-05-13 00:13 |
7 |
7,545 |
by smlewis Mon, 2014-04-21 06:47 |
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