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Rosetta 3 - General

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Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
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789 by matteoferla
Sun, 2020-03-22 05:29
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
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1,495 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
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1,343 by gobli033
Mon, 2014-04-21 06:47
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
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723 by YuFei
Wed, 2020-04-22 17:27
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
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723 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
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1,148 by wentlewi
Sat, 2020-05-16 08:06
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
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912 by fgomes
Fri, 2019-11-22 19:12
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
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1,258 by albumns
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
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1,353 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
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594 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
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173 by biotech
Wed, 2022-10-26 11:17
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
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1,276 by tricia
Mon, 2014-04-21 06:47
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
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678 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
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620 by Corvin
Wed, 2021-05-19 07:54
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
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1,514 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
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928 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
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939 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
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631 by rvandamme
Mon, 2021-02-01 13:39
Normal topic How to set jump between ligands
by Zehui Zhou » Wed, 2023-02-15 04:48
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94 by Zehui Zhou
Wed, 2023-02-15 07:12
Normal topic RNA & protein folding
by sdh » Thu, 2009-12-17 00:58
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1,394 by sdh
Mon, 2014-04-21 06:47
Normal topic benchmark for rosetta3.1
by anusmita_sahoo » Tue, 2010-05-04 22:05
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1,317 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
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1,503 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
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1,407 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
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657 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
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190 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
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2,568 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
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1,044 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
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1,227 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
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694 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
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387 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
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192 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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888 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
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880 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
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207 by ialvy
Tue, 2022-08-30 00:00
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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421 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic (eliminated)
by jiyongpark.77 » Tue, 2009-11-24 00:56
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1,398 by jiyongpark.77
Mon, 2014-04-21 06:47
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
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797 by jmaly
Wed, 2020-09-02 16:16
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
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180 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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2,323 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
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1,100 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
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845 by matteoferla
Thu, 2021-04-01 04:06
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
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251 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
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1,671 by joseph
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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1,491 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
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671 by ate
Sat, 2021-05-01 02:22
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
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218 by mb0261
Thu, 2022-06-30 10:48
Normal topic 3.1 CLUSTERING OUTPUT
by w107kdk » Mon, 2009-12-07 13:10
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1,528 by w107kdk
Mon, 2014-04-21 06:47
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
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758 by haom
Wed, 2020-09-09 09:19
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
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189 by He Xiao
Mon, 2022-11-07 04:10
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
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553 by dkesar
Fri, 2021-06-04 19:09
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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3,954 by xujc
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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1,889 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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448 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
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254 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic Clustering TM domain of transmembrane protein
by justin » Sun, 2010-03-21 23:26
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1,317 by justin
Mon, 2014-04-21 06:47
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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1,343 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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510 by Antonia
Wed, 2021-06-16 12:30
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
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227 by csvajda
Sat, 2022-08-13 08:08
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,260 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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563 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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288 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic extract pdbs segmentation fault
by Swillard » Fri, 2017-09-08 07:20
1
1,471 by rmoretti
Fri, 2017-09-08 15:15
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic "unrecognized aa ACT"
by einew » Sat, 2011-08-27 14:58
1
2,196 by smlewis
Mon, 2014-04-21 06:47
Normal topic problems in building rosetta3.1 (solved)
by zpliu09 » Wed, 2010-03-31 02:03
1
1,722 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to define a theozyme from the .pdb crystal structure without ligand?
by weifulei » Mon, 2019-05-20 21:18
1
1,440 by rmoretti
Tue, 2019-07-09 12:31
Normal topic Gaussian Constraint For Dihedrals
by jinli711 » Thu, 2020-07-23 10:47
1
1,038 by matteoferla
Fri, 2020-07-24 03:06
Normal topic How to relax a protein model calling Rosetta functions from my C++ code
by sncrivelli » Tue, 2011-10-25 00:16
1
2,750 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to set the output name for fixbb design
by Lindsay » Mon, 2012-04-30 09:32
1
1,880 by smlewis
Mon, 2014-04-21 06:47
Normal topic [dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation
by ipetrik_ambry » Thu, 2018-01-18 12:26
1
1,374 by rmoretti
Tue, 2018-01-30 08:29
Normal topic Generating Protein/NA decoys
by rbeier1 » Mon, 2016-01-11 03:25
1
2,066 by rmoretti
Thu, 2016-04-28 16:25
Normal topic Icouldnot find DDMI protocol for design protein
by ladimafakher » Mon, 2018-02-12 09:22
1
1,334 by rmoretti
Mon, 2018-02-12 09:39
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
1,058 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic MPI nodes hanging and output log incomplete
by yuvals » Wed, 2014-06-18 05:40
1
5,215 by yuvals
Sat, 2014-06-21 02:17
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
996 by rmoretti
Tue, 2021-02-09 11:30
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,858 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,436 by smlewis
Mon, 2014-04-21 06:47
Normal topic 3D Structure Prediction
by anirbanzz » Sat, 2010-04-17 02:47
1
2,355 by smlewis
Mon, 2014-04-21 06:47
Normal topic Changing Monte Carlo temperature for relax
by jruhym » Thu, 2012-02-02 15:18
1
2,239 by rmoretti
Mon, 2014-04-21 06:47
Normal topic How to import SymmDock models into Rosetta for local docking and energy minimization
by devroop » Fri, 2012-07-20 13:20
1
2,900 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to modify disulfide bonds constrain in homology modeling
by eunwook » Mon, 2013-05-13 04:56
1
2,532 by smlewis
Mon, 2014-04-21 06:47
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
2,104 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,203 by smlewis
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
1,878 by rmoretti
Sat, 2018-03-17 10:43
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
1,723 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,497 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
2,800 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,090 by rmoretti
Tue, 2021-02-09 09:37
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
1,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,546 by kaue
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,691 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
781 by cryosky
Fri, 2021-09-17 22:04
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,962 by smlewis
Mon, 2014-04-21 06:47
Normal topic python problem?
by albumns » Fri, 2012-03-02 11:03
1
1,895 by albumns
Mon, 2014-04-21 06:47
Normal topic Issues running the Matcher in 3.4 and 3.5
by Jhreed » Tue, 2015-05-26 11:38
1
1,842 by rmoretti
Wed, 2015-06-17 12:43
Normal topic How to read the output score file from rosetta?
by Sunyp_IM » Sun, 2017-08-27 05:29
1
2,468 by rmoretti
Mon, 2017-08-28 09:32
Normal topic Questions regarding fragmentation using Robetta
by ahmadkhalifa » Thu, 2018-06-28 13:24
1
1,212 by smlewis
Thu, 2018-06-28 13:34
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,105 by smlewis
Mon, 2014-04-21 06:47
Normal topic Will Rosetta Flexpepdock be adequate for this for now.?
by monos_morpheus » Wed, 2011-04-27 19:10
1
2,275 by londonir
Mon, 2014-04-21 06:47
Normal topic Comparative modelling of dimer
by rt1108 » Fri, 2012-06-15 07:31
1
2,468 by smlewis
Mon, 2014-04-21 06:47
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