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Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
788 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
595 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
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978 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
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980 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
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333 by ialvy
Tue, 2022-08-30 00:00
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
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2,441 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
1,194 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
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1,004 by matteoferla
Thu, 2021-04-01 04:06
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
358 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
0
167 by almeida85
Thu, 2023-05-25 06:18
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
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530 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
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902 by jmaly
Wed, 2020-09-02 16:16
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
0
314 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,767 by joseph
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
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1,750 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
773 by ate
Sat, 2021-05-01 02:22
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
0
342 by mb0261
Thu, 2022-06-30 10:48
Normal topic Generating Params File for water molecule
by Ahmed Raslan » Thu, 2023-08-17 13:13
0
85 by Ahmed Raslan
Thu, 2023-08-17 13:13
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
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874 by haom
Wed, 2020-09-09 09:19
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
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328 by He Xiao
Mon, 2022-11-07 04:10
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
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1,979 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
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1,467 by tevang
Mon, 2014-04-21 06:47
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
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645 by dkesar
Fri, 2021-06-04 19:09
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
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4,065 by xujc
Mon, 2014-04-21 06:47
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
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542 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
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383 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
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1,439 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
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1,403 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
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600 by Antonia
Wed, 2021-06-16 12:30
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
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357 by csvajda
Sat, 2022-08-13 08:08
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
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1,345 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
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689 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
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417 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
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156 by chenna
Sun, 2023-04-23 23:52
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
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843 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
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784 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
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608 by Soler
Sat, 2021-11-20 23:41
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
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1,259 by jferrie
Mon, 2018-04-23 15:25
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
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620 by rohi
Fri, 2021-06-25 10:29
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
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303 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
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1,412 by albumns
Mon, 2014-04-21 06:47
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
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766 by pci112
Mon, 2021-04-12 08:12
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
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356 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic GALigandDock errors
by Delfosse57 » Mon, 2023-08-07 13:16
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74 by Delfosse57
Mon, 2023-08-07 13:16
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
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1,505 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
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580 by Soler
Sat, 2022-01-15 22:09
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
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1,229 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
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852 by yinasun
Fri, 2019-07-26 02:17
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
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791 by haom
Tue, 2020-09-01 18:50
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
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863 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
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309 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
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322 by almeida85
Thu, 2022-11-17 01:04
Normal topic Suggestions for email notification & "category" for post
by lanselibai » Sun, 2014-11-16 10:44
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1,408 by lanselibai
Sun, 2014-11-16 10:44
Normal topic alignblast.pl truncated file
by rlwoltz » Mon, 2019-03-11 18:32
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1,028 by rlwoltz
Mon, 2019-03-11 18:32
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
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2,251 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic reading of AtomPair failed in relax with constraint
by hajar » Wed, 2020-06-10 10:02
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1,171 by hajar
Wed, 2020-06-10 11:17
Normal topic Porblem with Rosetta Homology Modelling
by Karthik » Wed, 2022-07-13 23:45
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355 by Karthik
Wed, 2022-07-13 23:45
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
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725 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
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1,704 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic Unexpected length of light chain FR1
by mgupta » Fri, 2022-12-09 01:03
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423 by mgupta
Fri, 2022-12-09 01:03
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
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716 by jeanramos
Mon, 2020-07-13 00:56
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
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812 by rohi
Mon, 2021-03-15 06:31
Normal topic How many rifdock can I run at a time on a 64 CPUs and 512GB memory server?
by JasonIsaac » Tue, 2023-05-02 03:39
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145 by JasonIsaac
Tue, 2023-05-02 03:39
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
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794 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Scoring correlation with electron density map
by mrosam » Thu, 2023-05-25 05:14
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141 by mrosam
Thu, 2023-05-25 05:14
Normal topic Global ligand docking with Rosetta script and PyRosetta
by tisozaki » Tue, 2021-12-14 17:16
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593 by tisozaki
Tue, 2021-12-14 17:16
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
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921 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
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757 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic Errors in Interface_design_demo
by zhoubin » Fri, 2019-01-04 13:14
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1,053 by zhoubin
Fri, 2019-01-04 13:14
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
878 by Kazu
Wed, 2020-05-20 11:58
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
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1,514 by myang
Mon, 2014-04-21 06:47
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
824 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic ddG of multiple mutations on a monomer
by hltorresvera » Mon, 2021-02-01 16:54
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1,614 by hltorresvera
Tue, 2021-02-09 10:44
Normal topic Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state?
by JasonIsaac » Wed, 2023-02-22 18:36
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273 by JasonIsaac
Wed, 2023-02-22 18:36
Normal topic Adding NCAA with Metal Ion
by MustafaBughio » Mon, 2022-11-28 15:07
1
542 by JasonIsaac
Mon, 2022-12-05 18:41
Normal topic angle constraints
by gw » Tue, 2011-07-19 07:49
1
2,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,550 by rmoretti
Wed, 2017-09-06 08:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
2,040 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to add constrains in flexible peptide docking
by kingbo2008 » Fri, 2011-04-29 07:55
1
2,225 by smlewis
Mon, 2014-04-21 06:47
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
3,908 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using logic in resfile, Rosetta Scripts
by tsztain » Wed, 2017-03-22 13:50
1
1,612 by smlewis
Wed, 2017-03-22 14:02
Normal topic Modeling transmembrane and intracellular domain
by Sunyp_IM » Sun, 2018-04-08 06:44
1
1,512 by jkleman
Sat, 2018-04-14 10:55
Normal topic The question about FavorNativeResidue
by asbelx » Fri, 2019-04-12 20:02
1
1,534 by rmoretti
Tue, 2019-07-09 15:57
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,028 by smlewis
Mon, 2014-04-21 06:47
Normal topic Unrecognized D-Leu name / C-terminal ACE
by almeida85 » Thu, 2022-08-11 07:43
1
449 by almeida85
Fri, 2022-08-12 05:56
Normal topic model protein at low pH
by ytao » Mon, 2012-11-05 07:52
1
2,747 by smlewis
Mon, 2014-04-21 06:47
Normal topic Atom_.cc line 304
by fred » Thu, 2014-09-11 12:04
1
1,984 by rmoretti
Fri, 2014-09-12 09:11
Normal topic What is "repack", "prepack"?
by cossio » Wed, 2015-11-04 17:59
1
5,577 by rmoretti
Tue, 2015-11-10 11:52
Normal topic "abinitio" with mpi
by al614 » Wed, 2016-10-12 12:17
1
2,135 by rmoretti
Fri, 2016-10-14 15:46
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
2,165 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta changing Atom Name in PDB ATOM record?
by chrisHKL » Tue, 2020-03-03 20:50
1
1,312 by smlewis
Wed, 2020-03-04 07:40
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,548 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get fragment library from robetta server for mre than 1000 residue sequence?
by Danielsebas » Wed, 2019-09-18 07:53
1
1,327 by rmoretti
Wed, 2019-09-18 10:49
Normal topic protein design for increasing its affinity towards ligand
by rohi » Fri, 2020-10-30 11:33
1
1,167 by rmoretti
Tue, 2021-02-09 12:25
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
857 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Structure Prediction of protein mutant using relax
by Delfosse57 » Tue, 2023-01-10 13:26
1
343 by JW_24
Tue, 2023-01-24 04:55
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
2,242 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to site the scoring application in rosetta3.1?
by doranhen » Thu, 2012-07-05 10:07
1
2,312 by smlewis
Mon, 2014-04-21 06:47
Normal topic fragment_picker error secondarysimilarity.cc line:132
by leanawen » Mon, 2013-04-15 14:33
1
1,968 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is there a way to calculate chi1 and chi1+chi differences between two structures?
by sn » Thu, 2017-04-20 21:46
1
1,921 by rmoretti
Fri, 2017-04-21 07:52
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