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Rosetta 3 - General
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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789 |
by matteoferla Sun, 2020-03-22 05:29 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
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1,495 |
by exchhattu Mon, 2014-04-21 06:47 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
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1,343 |
by gobli033 Mon, 2014-04-21 06:47 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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723 |
by YuFei Wed, 2020-04-22 17:27 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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723 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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1,148 |
by wentlewi Sat, 2020-05-16 08:06 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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912 |
by fgomes Fri, 2019-11-22 19:12 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
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1,258 |
by albumns Mon, 2014-04-21 06:47 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
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1,353 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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594 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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173 |
by biotech Wed, 2022-10-26 11:17 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
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1,276 |
by tricia Mon, 2014-04-21 06:47 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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678 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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620 |
by Corvin Wed, 2021-05-19 07:54 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,514 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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928 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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939 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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631 |
by rvandamme Mon, 2021-02-01 13:39 |
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How to set jump between ligands by Zehui Zhou » Wed, 2023-02-15 04:48 |
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94 |
by Zehui Zhou Wed, 2023-02-15 07:12 |
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RNA & protein folding by sdh » Thu, 2009-12-17 00:58 |
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1,394 |
by sdh Mon, 2014-04-21 06:47 |
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benchmark for rosetta3.1 by anusmita_sahoo » Tue, 2010-05-04 22:05 |
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1,317 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,503 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,407 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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657 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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190 |
by liuwenxi Tue, 2022-08-09 08:33 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,568 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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1,044 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,227 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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694 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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387 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
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192 |
by SebastianBB Mon, 2022-11-21 08:33 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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888 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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880 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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207 |
by ialvy Tue, 2022-08-30 00:00 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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421 |
by hanzhiz Thu, 2021-12-16 09:18 |
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(eliminated) by jiyongpark.77 » Tue, 2009-11-24 00:56 |
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1,398 |
by jiyongpark.77 Mon, 2014-04-21 06:47 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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797 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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180 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,323 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,100 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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845 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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251 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,671 |
by joseph Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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1,491 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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671 |
by ate Sat, 2021-05-01 02:22 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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218 |
by mb0261 Thu, 2022-06-30 10:48 |
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3.1 CLUSTERING OUTPUT by w107kdk » Mon, 2009-12-07 13:10 |
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1,528 |
by w107kdk Mon, 2014-04-21 06:47 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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758 |
by haom Wed, 2020-09-09 09:19 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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189 |
by He Xiao Mon, 2022-11-07 04:10 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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553 |
by dkesar Fri, 2021-06-04 19:09 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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3,954 |
by xujc Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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1,889 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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448 |
by Wenithor Sat, 2021-10-09 07:23 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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254 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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Clustering TM domain of transmembrane protein by justin » Sun, 2010-03-21 23:26 |
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1,317 |
by justin Mon, 2014-04-21 06:47 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,343 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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510 |
by Antonia Wed, 2021-06-16 12:30 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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227 |
by csvajda Sat, 2022-08-13 08:08 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,260 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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563 |
by whiteqiu Mon, 2021-03-01 18:32 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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288 |
by rlwoltz Fri, 2022-04-29 15:15 |
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extract pdbs segmentation fault by Swillard » Fri, 2017-09-08 07:20 |
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1,471 |
by rmoretti Fri, 2017-09-08 15:15 |
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what kind of focefield does Rosetta based on? by albumns » Tue, 2010-07-06 11:08 |
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1,869 |
by smlewis Mon, 2014-04-21 06:47 |
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"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
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2,196 |
by smlewis Mon, 2014-04-21 06:47 |
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problems in building rosetta3.1 (solved) by zpliu09 » Wed, 2010-03-31 02:03 |
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1,722 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
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1,440 |
by rmoretti Tue, 2019-07-09 12:31 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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1,038 |
by matteoferla Fri, 2020-07-24 03:06 |
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How to relax a protein model calling Rosetta functions from my C++ code by sncrivelli » Tue, 2011-10-25 00:16 |
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2,750 |
by smlewis Mon, 2014-04-21 06:47 |
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how to set the output name for fixbb design by Lindsay » Mon, 2012-04-30 09:32 |
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1,880 |
by smlewis Mon, 2014-04-21 06:47 |
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[dev] quickest way to determine bond distance between polymeric-bonded residues in Pose/Conformation by ipetrik_ambry » Thu, 2018-01-18 12:26 |
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1,374 |
by rmoretti Tue, 2018-01-30 08:29 |
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Generating Protein/NA decoys by rbeier1 » Mon, 2016-01-11 03:25 |
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2,066 |
by rmoretti Thu, 2016-04-28 16:25 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,334 |
by rmoretti Mon, 2018-02-12 09:39 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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1,058 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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MPI nodes hanging and output log incomplete by yuvals » Wed, 2014-06-18 05:40 |
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5,215 |
by yuvals Sat, 2014-06-21 02:17 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
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996 |
by rmoretti Tue, 2021-02-09 11:30 |
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PDB output sum by enoee » Fri, 2010-07-16 12:29 |
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1,858 |
by smlewis Mon, 2014-04-21 06:47 |
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Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
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2,436 |
by smlewis Mon, 2014-04-21 06:47 |
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3D Structure Prediction by anirbanzz » Sat, 2010-04-17 02:47 |
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2,355 |
by smlewis Mon, 2014-04-21 06:47 |
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Changing Monte Carlo temperature for relax by jruhym » Thu, 2012-02-02 15:18 |
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2,239 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to import SymmDock models into Rosetta for local docking and energy minimization by devroop » Fri, 2012-07-20 13:20 |
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2,900 |
by smlewis Mon, 2014-04-21 06:47 |
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How to modify disulfide bonds constrain in homology modeling by eunwook » Mon, 2013-05-13 04:56 |
1 |
2,532 |
by smlewis Mon, 2014-04-21 06:47 |
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score function for centroid mode by MarkW » Thu, 2015-02-26 08:56 |
1 |
2,104 |
by jadolfbr Fri, 2015-02-27 11:08 |
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could restta consider the flexibility of backbone duirng protein docking? by albumns » Wed, 2010-11-24 01:00 |
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2,203 |
by smlewis Mon, 2014-04-21 06:47 |
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The algorithm of adding missing Hydrogen to a backbone by ac.research » Tue, 2018-03-06 03:48 |
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1,878 |
by rmoretti Sat, 2018-03-17 10:43 |
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meaning of the clustering the output files by phanvy » Tue, 2014-06-24 07:11 |
1 |
1,723 |
by rmoretti Tue, 2014-07-01 12:07 |
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Remodel introduces clashes when stitching by achambe » Thu, 2016-08-25 17:51 |
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1,497 |
by possu Tue, 2016-08-30 16:57 |
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MET, MSE, and fMET Amino Acids by ac.research » Sat, 2017-11-18 06:33 |
1 |
2,800 |
by smlewis Sun, 2017-11-19 20:08 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
1 |
1,090 |
by rmoretti Tue, 2021-02-09 09:37 |
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ab initio protein structure prediction by croshong » Wed, 2009-12-16 23:25 |
1 |
1,907 |
by smlewis Mon, 2014-04-21 06:47 |
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Generating Fragment Libraries for Metal Binding Proteins by buzb » Wed, 2011-01-26 12:43 |
1 |
2,546 |
by kaue Mon, 2014-04-21 06:47 |
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How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS? by Sunyp_IM » Thu, 2017-07-27 01:07 |
1 |
3,691 |
by SenyorDrew Sat, 2017-07-29 09:59 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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781 |
by cryosky Fri, 2021-09-17 22:04 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
1,962 |
by smlewis Mon, 2014-04-21 06:47 |
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python problem? by albumns » Fri, 2012-03-02 11:03 |
1 |
1,895 |
by albumns Mon, 2014-04-21 06:47 |
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Issues running the Matcher in 3.4 and 3.5 by Jhreed » Tue, 2015-05-26 11:38 |
1 |
1,842 |
by rmoretti Wed, 2015-06-17 12:43 |
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How to read the output score file from rosetta? by Sunyp_IM » Sun, 2017-08-27 05:29 |
1 |
2,468 |
by rmoretti Mon, 2017-08-28 09:32 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
1 |
1,212 |
by smlewis Thu, 2018-06-28 13:34 |
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MoveMap file for backrub by jiyongpark.77 » Sat, 2009-07-18 03:53 |
1 |
2,105 |
by smlewis Mon, 2014-04-21 06:47 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,275 |
by londonir Mon, 2014-04-21 06:47 |
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Comparative modelling of dimer by rt1108 » Fri, 2012-06-15 07:31 |
1 |
2,468 |
by smlewis Mon, 2014-04-21 06:47 |
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