You are here

Rosetta 3 - General

Topic / Topic starter Repliessort descending Views Last post
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
1,083 by rohi
Thu, 2020-10-15 10:28
Normal topic What should I do to lower down the fa_sol scores?
by JasonIsaac » Mon, 2022-12-05 18:57
0
641 by JasonIsaac
Mon, 2022-12-05 18:57
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
1,088 by LTJ
Mon, 2020-07-06 14:13
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
780 by ate
Wed, 2021-06-16 19:19
Normal topic Cartesian_ddG mutfile error
by paulbo » Mon, 2024-02-05 01:25
0
431 by paulbo
Mon, 2024-02-05 01:25
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,756 by DanielK
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
1,049 by matteoferla
Sun, 2020-03-22 05:29
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
994 by YuFei
Wed, 2020-04-22 17:27
Normal topic Intel MPI: early exit due to job process stopped.
by jackzzs » Mon, 2023-05-15 02:57
0
1,369 by jackzzs
Mon, 2023-05-15 03:17
Normal topic Hamiltonian Exchange
by JSK » Mon, 2024-03-18 12:44
0
211 by JSK
Tue, 2024-03-19 09:21
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
971 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic [ WARNING ] missing an atom: 1 H that depends on a nonexistent polymer connection!
by Jane_002 » Tue, 2023-08-08 21:07
0
622 by Jane_002
Tue, 2023-08-08 21:07
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,600 by tevang
Mon, 2014-04-21 06:47
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
0
1,229 by fgomes
Fri, 2019-11-22 19:12
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
0
846 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
0
595 by biotech
Wed, 2022-10-26 11:17
Normal topic How do I implement more CPU cores in the execution of FlexPepDock?
by ChoripanSalado » Thu, 2024-05-02 08:55
0
185 by ChoripanSalado
Thu, 2024-05-02 08:55
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
955 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
894 by Corvin
Wed, 2021-05-19 07:54
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
1,545 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,821 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
1,186 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
0
1,269 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
938 by rvandamme
Mon, 2021-02-01 13:39
Normal topic How to set jump between ligands
by Zehui Zhou » Wed, 2023-02-15 04:48
0
503 by Zehui Zhou
Wed, 2023-02-15 07:12
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
594 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,752 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,643 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
914 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
0
576 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic FARFAR2 error: [ERROR: Not complementary at positions]
by Eden » Sat, 2023-11-18 02:39
0
287 by Eden
Sat, 2023-11-18 02:39
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,824 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
1,375 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
1,490 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
939 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
866 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
0
1,531 by albumns
Mon, 2014-04-21 06:47
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
1,146 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
1,151 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
0
591 by ialvy
Tue, 2022-08-30 00:00
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,615 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
1,354 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
1,275 by matteoferla
Thu, 2021-04-01 04:06
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
541 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Memory error - double free or corruption
by almeida85 » Thu, 2023-05-25 06:18
0
453 by almeida85
Thu, 2023-05-25 06:18
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
2,417 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
705 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
1,143 by jmaly
Wed, 2020-09-02 16:16
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
0
558 by cttm4a1
Wed, 2022-09-14 23:40
Normal topic Scripts and/or strategies for saturation mutagenesis simulations?
by drinker615 » Tue, 2024-04-16 18:43
0
177 by drinker615
Tue, 2024-04-16 18:43
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,903 by joseph
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
2,126 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
925 by ate
Sat, 2021-05-01 02:22
Normal topic How to add new Movers to Rosetta
by mb0261 » Thu, 2022-06-30 10:48
0
563 by mb0261
Thu, 2022-06-30 10:48
Normal topic Generating Params File for water molecule
by Ahmed Raslan » Thu, 2023-08-17 13:13
0
594 by Ahmed Raslan
Thu, 2023-08-17 13:13
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,851 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
1,042 by haom
Wed, 2020-09-09 09:19
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
0
592 by He Xiao
Mon, 2022-11-07 04:10
Normal topic Question about blueprint file generation
by ng98 » Fri, 2024-05-24 03:02
0
66 by ng98
Fri, 2024-05-24 03:02
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
2,118 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
804 by dkesar
Fri, 2021-06-04 19:09
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
4,270 by xujc
Mon, 2014-04-21 06:47
Normal topic Help with file in article Kemp elimination catalysts by computational enzyme design
by Wenithor » Sat, 2021-10-09 07:23
0
723 by Wenithor
Sat, 2021-10-09 07:23
Normal topic Predicting structure of protein after a few mutations
by Delfosse57 » Thu, 2022-12-01 20:40
0
620 by Delfosse57
Thu, 2022-12-01 20:40
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,585 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
767 by Antonia
Wed, 2021-06-16 12:30
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
0
626 by csvajda
Sat, 2022-08-13 08:08
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,491 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
0
863 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
0
684 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic TaskOperations with AntibodyDesignMover
by chenna » Sun, 2023-04-23 23:52
0
417 by chenna
Sun, 2023-04-23 23:52
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
0
980 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
947 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
800 by Soler
Sat, 2021-11-20 23:41
Normal topic Molfile to Params File Issue
by jferrie » Mon, 2018-04-23 15:25
0
1,448 by jferrie
Mon, 2018-04-23 15:25
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
0
788 by rohi
Fri, 2021-06-25 10:29
Normal topic Proper indexing of grafted residues by CCDEndsGraftMover
by cttm4a1 » Wed, 2022-09-07 23:41
0
565 by cttm4a1
Wed, 2022-09-07 23:41
Normal topic JD3 FastRelax over MPI - crashes on relax completion/before writing output
by aduffy33 » Tue, 2024-03-12 12:51
0
237 by aduffy33
Tue, 2024-03-12 12:52
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
957 by pci112
Mon, 2021-04-12 08:12
Normal topic Antigen-antibody modeling
by aastha.pal » Mon, 2022-06-27 09:34
0
583 by aastha.pal
Mon, 2022-06-27 09:34
Normal topic GALigandDock errors
by Delfosse57 » Mon, 2023-08-07 13:16
0
516 by Delfosse57
Mon, 2023-08-07 13:16
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
1,676 by myang
Mon, 2014-04-21 06:47
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,674 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
0
803 by Soler
Sat, 2022-01-15 22:09
Normal topic Structure-sequence alignment generation with selected PDB how?
by nzsuzsanna » Tue, 2016-05-10 07:39
0
1,412 by nzsuzsanna
Tue, 2016-05-10 07:39
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
1,028 by yinasun
Fri, 2019-07-26 02:17
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
0
945 by haom
Tue, 2020-09-01 18:50
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
0
1,103 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic On iterations in ddg_monomer
by Proteinmechanic » Fri, 2022-09-30 21:23
0
553 by Proteinmechanic
Fri, 2022-09-30 21:23
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,912 by kaue
Mon, 2014-04-21 06:47
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
4,590 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
1,308 by cryosky
Fri, 2021-09-17 22:04
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,524 by smlewis
Mon, 2014-04-21 06:47
Normal topic The algorithm of adding missing Hydrogen to a backbone
by ac.research » Tue, 2018-03-06 03:48
1
2,394 by rmoretti
Sat, 2018-03-17 10:43
Normal topic Parallel Installation of ROSETTA3.1
by anirbanzz » Mon, 2009-12-07 21:09
1
2,262 by smlewis
Mon, 2014-04-21 06:47
Normal topic meaning of the clustering the output files
by phanvy » Tue, 2014-06-24 07:11
1
2,068 by rmoretti
Tue, 2014-07-01 12:07
Normal topic Remodel introduces clashes when stitching
by achambe » Thu, 2016-08-25 17:51
1
1,866 by possu
Tue, 2016-08-30 16:57
Normal topic MET, MSE, and fMET Amino Acids
by ac.research » Sat, 2017-11-18 06:33
1
3,548 by smlewis
Sun, 2017-11-19 20:08
Normal topic computing Pnear for Rosetta ligand docking
by rohi » Mon, 2021-02-01 08:27
1
1,676 by rmoretti
Tue, 2021-02-09 09:37
Normal topic Rosetta 3.1 seg faults gcc while compiling on Fedora 11
by jtmacd » Fri, 2009-10-02 05:26
1
2,430 by smlewis
Mon, 2014-04-21 06:47
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General