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Rosetta 3 - General
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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788 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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595 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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978 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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980 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
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333 |
by ialvy Tue, 2022-08-30 00:00 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,441 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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1,194 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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1,004 |
by matteoferla Thu, 2021-04-01 04:06 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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358 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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Memory error - double free or corruption by almeida85 » Thu, 2023-05-25 06:18 |
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167 |
by almeida85 Thu, 2023-05-25 06:18 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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530 |
by hanzhiz Thu, 2021-12-16 09:18 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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902 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
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314 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
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1,767 |
by joseph Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
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1,750 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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773 |
by ate Sat, 2021-05-01 02:22 |
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How to add new Movers to Rosetta by mb0261 » Thu, 2022-06-30 10:48 |
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342 |
by mb0261 Thu, 2022-06-30 10:48 |
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Generating Params File for water molecule by Ahmed Raslan » Thu, 2023-08-17 13:13 |
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85 |
by Ahmed Raslan Thu, 2023-08-17 13:13 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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874 |
by haom Wed, 2020-09-09 09:19 |
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Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations. by He Xiao » Mon, 2022-11-07 03:41 |
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328 |
by He Xiao Mon, 2022-11-07 04:10 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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1,979 |
by burkheadlab Mon, 2014-04-21 06:47 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,467 |
by tevang Mon, 2014-04-21 06:47 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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645 |
by dkesar Fri, 2021-06-04 19:09 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
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4,065 |
by xujc Mon, 2014-04-21 06:47 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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542 |
by Wenithor Sat, 2021-10-09 07:23 |
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Predicting structure of protein after a few mutations by Delfosse57 » Thu, 2022-12-01 20:40 |
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383 |
by Delfosse57 Thu, 2022-12-01 20:40 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,439 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
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1,403 |
by exchhattu Mon, 2014-04-21 06:47 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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600 |
by Antonia Wed, 2021-06-16 12:30 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
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357 |
by csvajda Sat, 2022-08-13 08:08 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,345 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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689 |
by whiteqiu Mon, 2021-03-01 18:32 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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417 |
by rlwoltz Fri, 2022-04-29 15:15 |
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TaskOperations with AntibodyDesignMover by chenna » Sun, 2023-04-23 23:52 |
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156 |
by chenna Sun, 2023-04-23 23:52 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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843 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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784 |
by Sunidhi Sun, 2020-11-01 11:01 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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608 |
by Soler Sat, 2021-11-20 23:41 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,259 |
by jferrie Mon, 2018-04-23 15:25 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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620 |
by rohi Fri, 2021-06-25 10:29 |
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Proper indexing of grafted residues by CCDEndsGraftMover by cttm4a1 » Wed, 2022-09-07 23:41 |
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303 |
by cttm4a1 Wed, 2022-09-07 23:41 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,412 |
by albumns Mon, 2014-04-21 06:47 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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766 |
by pci112 Mon, 2021-04-12 08:12 |
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Antigen-antibody modeling by aastha.pal » Mon, 2022-06-27 09:34 |
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356 |
by aastha.pal Mon, 2022-06-27 09:34 |
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GALigandDock errors by Delfosse57 » Mon, 2023-08-07 13:16 |
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74 |
by Delfosse57 Mon, 2023-08-07 13:16 |
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Error using pHDock by SenyorDrew » Thu, 2016-08-11 05:56 |
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1,505 |
by SenyorDrew Thu, 2016-08-11 05:56 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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580 |
by Soler Sat, 2022-01-15 22:09 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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1,229 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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852 |
by yinasun Fri, 2019-07-26 02:17 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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791 |
by haom Tue, 2020-09-01 18:50 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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863 |
by rlwoltz Tue, 2021-08-03 23:26 |
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On iterations in ddg_monomer by Proteinmechanic » Fri, 2022-09-30 21:23 |
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309 |
by Proteinmechanic Fri, 2022-09-30 21:23 |
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Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90 by almeida85 » Thu, 2022-11-17 01:04 |
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322 |
by almeida85 Thu, 2022-11-17 01:04 |
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Suggestions for email notification & "category" for post by lanselibai » Sun, 2014-11-16 10:44 |
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1,408 |
by lanselibai Sun, 2014-11-16 10:44 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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1,028 |
by rlwoltz Mon, 2019-03-11 18:32 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
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2,251 |
by wtscrystal Mon, 2014-04-21 06:47 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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1,171 |
by hajar Wed, 2020-06-10 11:17 |
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Porblem with Rosetta Homology Modelling by Karthik » Wed, 2022-07-13 23:45 |
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355 |
by Karthik Wed, 2022-07-13 23:45 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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725 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
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1,704 |
by anirbanzz Mon, 2014-04-21 06:47 |
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Unexpected length of light chain FR1 by mgupta » Fri, 2022-12-09 01:03 |
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423 |
by mgupta Fri, 2022-12-09 01:03 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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716 |
by jeanramos Mon, 2020-07-13 00:56 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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812 |
by rohi Mon, 2021-03-15 06:31 |
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How many rifdock can I run at a time on a 64 CPUs and 512GB memory server? by JasonIsaac » Tue, 2023-05-02 03:39 |
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145 |
by JasonIsaac Tue, 2023-05-02 03:39 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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794 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Scoring correlation with electron density map by mrosam » Thu, 2023-05-25 05:14 |
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141 |
by mrosam Thu, 2023-05-25 05:14 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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593 |
by tisozaki Tue, 2021-12-14 17:16 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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921 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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757 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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1,053 |
by zhoubin Fri, 2019-01-04 13:14 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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878 |
by Kazu Wed, 2020-05-20 11:58 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,514 |
by myang Mon, 2014-04-21 06:47 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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824 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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1,614 |
by hltorresvera Tue, 2021-02-09 10:44 |
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Which application/mover should I use to evaluate the ddg between apo enzyme and enzyme binding with transition state? by JasonIsaac » Wed, 2023-02-22 18:36 |
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273 |
by JasonIsaac Wed, 2023-02-22 18:36 |
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Adding NCAA with Metal Ion by MustafaBughio » Mon, 2022-11-28 15:07 |
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542 |
by JasonIsaac Mon, 2022-12-05 18:41 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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2,340 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
1 |
1,550 |
by rmoretti Wed, 2017-09-06 08:47 |
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Bug in LoopMover_Refine_Backrub.cc ? by SunH » Wed, 2010-12-15 00:08 |
1 |
2,040 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
1 |
2,225 |
by smlewis Mon, 2014-04-21 06:47 |
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RMS in Score Application by brspurri » Thu, 2011-12-29 09:19 |
1 |
3,908 |
by smlewis Mon, 2014-04-21 06:47 |
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Using logic in resfile, Rosetta Scripts by tsztain » Wed, 2017-03-22 13:50 |
1 |
1,612 |
by smlewis Wed, 2017-03-22 14:02 |
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Modeling transmembrane and intracellular domain by Sunyp_IM » Sun, 2018-04-08 06:44 |
1 |
1,512 |
by jkleman Sat, 2018-04-14 10:55 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
1 |
1,534 |
by rmoretti Tue, 2019-07-09 15:57 |
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Parallel Installation of ROSETTA3.1 by anirbanzz » Mon, 2009-12-07 21:09 |
1 |
2,028 |
by smlewis Mon, 2014-04-21 06:47 |
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Unrecognized D-Leu name / C-terminal ACE by almeida85 » Thu, 2022-08-11 07:43 |
1 |
449 |
by almeida85 Fri, 2022-08-12 05:56 |
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model protein at low pH by ytao » Mon, 2012-11-05 07:52 |
1 |
2,747 |
by smlewis Mon, 2014-04-21 06:47 |
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Atom_.cc line 304 by fred » Thu, 2014-09-11 12:04 |
1 |
1,984 |
by rmoretti Fri, 2014-09-12 09:11 |
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What is "repack", "prepack"? by cossio » Wed, 2015-11-04 17:59 |
1 |
5,577 |
by rmoretti Tue, 2015-11-10 11:52 |
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"abinitio" with mpi by al614 » Wed, 2016-10-12 12:17 |
1 |
2,135 |
by rmoretti Fri, 2016-10-14 15:46 |
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Rosetta 3.1 seg faults gcc while compiling on Fedora 11 by jtmacd » Fri, 2009-10-02 05:26 |
1 |
2,165 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
1 |
1,312 |
by smlewis Wed, 2020-03-04 07:40 |
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energy units by jtmacd » Mon, 2009-07-06 10:39 |
1 |
3,548 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
1 |
1,327 |
by rmoretti Wed, 2019-09-18 10:49 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
1 |
1,167 |
by rmoretti Tue, 2021-02-09 12:25 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
1 |
857 |
by matteoferla Mon, 2021-12-13 02:27 |
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Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
1 |
343 |
by JW_24 Tue, 2023-01-24 04:55 |
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All possible mutations by abdullah_ahmed » Tue, 2011-01-04 02:11 |
1 |
2,242 |
by smlewis Mon, 2014-04-21 06:47 |
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
1 |
2,312 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
1 |
1,968 |
by smlewis Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
1 |
1,921 |
by rmoretti Fri, 2017-04-21 07:52 |
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