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Rosetta 3 - General
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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649 |
by asbelx Mon, 2022-06-06 23:15 |
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Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
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577 |
by matteoferla Fri, 2022-06-03 01:09 |
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RNA update library by Anne Klein » Mon, 2022-05-16 16:04 |
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615 |
by Anne Klein Tue, 2022-05-24 21:38 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
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495 |
by ajasja Mon, 2022-05-23 07:19 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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660 |
by e3lm Fri, 2022-05-06 16:10 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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343 |
by rlwoltz Fri, 2022-04-29 15:15 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
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338 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
4 |
1,007 |
by protein_fan Fri, 2022-04-15 17:41 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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476 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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Error: Start tag expected, '<' not found by Isomerase » Wed, 2022-04-06 19:45 |
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971 |
by rmoretti Thu, 2022-04-07 07:51 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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696 |
by rjacak Thu, 2022-03-31 10:53 |
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RifDock building error on Ubuntu 20.04，please help！ by guowuchen » Mon, 2022-03-28 03:53 |
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1,112 |
by guowuchen Wed, 2022-03-30 04:20 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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309 |
by Hyun Tue, 2022-03-29 19:53 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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334 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
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744 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
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683 |
by LanMei Tue, 2022-03-22 20:45 |
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Rosetta (antibody_designer) performance by Kihang _Youn » Wed, 2022-03-02 00:48 |
7 |
1,567 |
by Kihang _Youn Thu, 2022-03-10 16:30 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
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963 |
by csvajda Mon, 2022-03-07 07:46 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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586 |
by vmulligan Thu, 2022-03-03 18:48 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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706 |
by rmoretti Fri, 2022-02-18 11:14 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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670 |
by jadolfbr Sat, 2022-02-12 23:16 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
4 |
2,145 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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Ineffective Constraints by Sandy » Tue, 2017-09-05 19:36 |
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2,009 |
by CameronJA Wed, 2022-01-19 20:50 |
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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520 |
by Soler Sat, 2022-01-15 22:09 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
3 |
1,215 |
by matteoferla Mon, 2022-01-10 06:44 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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440 |
by tlopes Wed, 2022-01-05 18:19 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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481 |
by hanzhiz Thu, 2021-12-16 09:32 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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471 |
by hanzhiz Thu, 2021-12-16 09:18 |
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Global ligand docking with Rosetta script and PyRosetta by tisozaki » Tue, 2021-12-14 17:16 |
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511 |
by tisozaki Tue, 2021-12-14 17:16 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
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768 |
by matteoferla Mon, 2021-12-13 02:27 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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754 |
by rmoretti Tue, 2021-11-30 07:41 |
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PIPER-FlexPepDock protocol file apply_ftresult.py missing by diasmarieli » Thu, 2021-11-04 06:33 |
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1,095 |
by diasmarieli Fri, 2021-11-26 05:11 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
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953 |
by hong wei Thu, 2021-11-25 02:46 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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542 |
by Soler Sat, 2021-11-20 23:41 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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485 |
by lsong2 Thu, 2021-11-18 10:31 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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646 |
by ajasja Thu, 2021-11-18 00:33 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
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744 |
by gezmi Sat, 2021-11-06 15:26 |
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Help with file in article Kemp elimination catalysts by computational enzyme design by Wenithor » Sat, 2021-10-09 07:23 |
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479 |
by Wenithor Sat, 2021-10-09 07:23 |
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ref2015: approx. kcal/mol or actually kJ/mol? by matteoferla » Thu, 2021-10-07 04:04 |
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1,298 |
by matteoferla Thu, 2021-10-07 09:31 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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1,164 |
by amystevens Thu, 2021-09-30 14:18 |
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Make_fragments.pl database by TiagoGomes » Tue, 2009-10-13 11:31 |
5 |
3,882 |
by matteoferla Wed, 2021-09-29 01:58 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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602 |
by cryosky Sun, 2021-09-26 13:24 |
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Help deciphering an input by Elijah_Hix » Wed, 2021-09-22 11:12 |
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956 |
by Elijah_Hix Thu, 2021-09-23 10:13 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
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1,426 |
by matteoferla Mon, 2021-09-20 06:05 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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882 |
by cryosky Fri, 2021-09-17 22:04 |
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Error when running prepack of PLEXPEPDOCKING by phanvy » Wed, 2014-06-18 07:11 |
11 |
10,217 |
by G Mustafa Fri, 2021-09-10 08:20 |
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Error_fragment_generation by Payal Chatterjee » Fri, 2016-02-12 12:11 |
6 |
5,907 |
by G Mustafa Fri, 2021-09-10 01:16 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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853 |
by asbelx Wed, 2021-09-08 23:19 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
947 |
by matteoferla Thu, 2021-09-02 03:50 |
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how does rosetta handle hydrogens? by patcD » Tue, 2021-08-31 00:48 |
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1,011 |
by patcD Wed, 2021-09-01 06:54 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
3 |
1,240 |
by matteoferla Fri, 2021-08-20 08:37 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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632 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
1 |
881 |
by matteoferla Mon, 2021-08-09 01:53 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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789 |
by rlwoltz Tue, 2021-08-03 23:26 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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857 |
by zivben Sat, 2021-07-31 08:16 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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847 |
by ahuls1 Thu, 2021-07-29 13:23 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
1 |
869 |
by rmoretti Wed, 2021-07-14 07:07 |
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covalent ligand docking in Rosetta by rohi » Mon, 2021-06-07 06:39 |
12 |
7,901 |
by matteoferla Wed, 2021-07-14 04:03 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
2 |
1,104 |
by matteoferla Mon, 2021-07-12 02:23 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
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922 |
by ericlang Mon, 2021-07-05 06:59 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
2 |
1,619 |
by sgaray Fri, 2021-06-25 11:26 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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553 |
by rohi Fri, 2021-06-25 10:29 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
6 |
1,938 |
by rmoretti Thu, 2021-06-24 12:23 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
2 |
915 |
by lanselibai Thu, 2021-06-24 10:16 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
1 |
735 |
by lanselibai Wed, 2021-06-23 14:53 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
2 |
919 |
by lanselibai Wed, 2021-06-23 13:21 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
1 |
916 |
by rmoretti Wed, 2021-06-23 02:17 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
4 |
1,856 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
0 |
555 |
by ate Wed, 2021-06-16 19:19 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
542 |
by Antonia Wed, 2021-06-16 12:30 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
0 |
545 |
by CameronJA Mon, 2021-06-14 16:12 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
1 |
790 |
by taylorjones Wed, 2021-06-09 16:30 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
1 |
770 |
by nannemdp Sun, 2021-06-06 09:26 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
0 |
587 |
by dkesar Fri, 2021-06-04 19:09 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
1 |
1,088 |
by matteoferla Thu, 2021-06-03 08:24 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
1 |
1,022 |
by rmoretti Fri, 2021-05-28 08:54 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
0 |
663 |
by Corvin Wed, 2021-05-19 07:54 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
2 |
1,104 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
3 |
1,424 |
by danpf Mon, 2021-05-10 10:04 |
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Calibur not listing cluster members by Swillard » Sun, 2018-07-01 13:07 |
2 |
1,996 |
by benhardy Fri, 2021-05-07 07:22 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
0 |
769 |
by ate Sat, 2021-05-01 02:52 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
713 |
by ate Sat, 2021-05-01 02:22 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
1 |
1,088 |
by vmulligan Wed, 2021-04-28 14:20 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
1 |
906 |
by rmoretti Tue, 2021-04-20 13:06 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
1 |
990 |
by rmoretti Tue, 2021-04-13 06:42 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
0 |
703 |
by pci112 Mon, 2021-04-12 08:12 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
1 |
956 |
by taylorjones Mon, 2021-04-05 13:17 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
2 |
1,216 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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params file for beta-amino acids by phonez » Mon, 2021-03-29 18:30 |
4 |
1,878 |
by everyday847 Thu, 2021-04-01 11:59 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
1,588 |
by duz Thu, 2021-04-01 09:34 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
0 |
896 |
by matteoferla Thu, 2021-04-01 04:06 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
5 |
2,074 |
by everyday847 Mon, 2021-03-29 20:19 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
2 |
1,054 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
2 |
1,191 |
by pci112 Thu, 2021-03-25 01:44 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
2 |
1,532 |
by rlwoltz Wed, 2021-03-24 22:36 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
1 |
1,089 |
by matteoferla Mon, 2021-03-22 08:29 |
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Suppress printing to STDOUT for applications by tylerborrman » Tue, 2015-11-24 11:37 |
5 |
4,808 |
by code_Monkey Thu, 2021-03-18 08:03 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
1,394 |
by rmoretti Wed, 2021-03-17 13:52 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
0 |
739 |
by rohi Mon, 2021-03-15 06:31 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
1 |
1,014 |
by aloshbau Tue, 2021-03-09 02:47 |
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