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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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603 |
by rmoretti Tue, 2021-02-09 10:29 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
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604 |
by matteoferla Mon, 2021-08-09 01:53 |
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partial charge of params file in ligand docking by rohi » Fri, 2021-05-28 08:43 |
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605 |
by rmoretti Fri, 2021-05-28 08:54 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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609 |
by haom Wed, 2020-09-09 09:19 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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614 |
by Kazu Wed, 2020-05-20 11:58 |
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Why does the sum of the per-residue total energy not match the whole score? by matteoferla » Fri, 2021-07-09 08:36 |
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615 |
by matteoferla Mon, 2021-07-12 02:23 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
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624 |
by rmoretti Tue, 2021-04-20 13:06 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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629 |
by rohi Thu, 2020-10-15 10:28 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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630 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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632 |
by Danielsebas Tue, 2019-09-24 05:03 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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633 |
by yinasun Fri, 2019-07-26 02:17 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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640 |
by matteoferla Sun, 2020-03-22 05:29 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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642 |
by jmaly Wed, 2020-09-02 16:16 |
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pyrosetta.rosetta.core.pose.rna by chenjief » Tue, 2021-11-23 07:03 |
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642 |
by matteoferla Mon, 2022-01-10 06:44 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
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655 |
by rmoretti Wed, 2021-01-20 07:39 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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676 |
by rmoretti Tue, 2021-02-09 10:48 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
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676 |
by matteoferla Thu, 2021-06-03 08:24 |
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opencl support programs by x_wuxi » Mon, 2021-04-12 18:17 |
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676 |
by rmoretti Tue, 2021-04-13 06:42 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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684 |
by taylorjones Mon, 2021-04-05 13:17 |
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There is a problem executing “rosetta_scripts.static.linuxgccrelease ” by zjya » Tue, 2021-02-02 23:44 |
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686 |
by rmoretti Wed, 2021-02-03 14:45 |
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Speeding up FastDesign by ebetica0 » Wed, 2021-04-28 13:08 |
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686 |
by vmulligan Wed, 2021-04-28 14:20 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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687 |
by fgomes Fri, 2019-11-22 19:12 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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696 |
by Anpu Thu, 2018-09-27 23:36 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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696 |
by pmit Thu, 2018-05-03 01:48 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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704 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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705 |
by matteoferla Mon, 2021-03-22 08:29 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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706 |
by matteoferla Fri, 2020-04-10 02:40 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
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712 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
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714 |
by BioPython Sun, 2019-05-12 20:07 |
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Chain name being read as residue by MarkusAurelius » Mon, 2021-03-22 11:19 |
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716 |
by MarkusAurelius Mon, 2021-03-29 09:06 |
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problem plotting results from docking_analyser with provided Rscript by madammolecular » Mon, 2021-02-01 14:44 |
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717 |
by amystevens Thu, 2021-09-30 14:18 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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721 |
by aloshbau Tue, 2021-03-09 02:47 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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721 |
by matteoferla Fri, 2021-08-20 08:37 |
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Rosetta Double changing mmCIF chain ID by Victor Tobiasson » Thu, 2021-05-13 07:57 |
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729 |
by Victor Tobiasson Thu, 2021-05-13 08:33 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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731 |
by yangshen12 Fri, 2018-10-26 12:34 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
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736 |
by matteoferla Mon, 2021-09-20 06:05 |
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Segfault with docking protocol by almeida85 » Mon, 2021-02-08 06:39 |
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739 |
by almeida85 Mon, 2021-02-08 09:50 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
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750 |
by windmill Thu, 2020-06-18 21:32 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
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753 |
by bazzoli Wed, 2018-10-10 01:59 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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754 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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756 |
by obdulia Wed, 2018-04-18 00:45 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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759 |
by rmoretti Tue, 2021-02-09 12:25 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
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760 |
by zhoubin Fri, 2019-01-04 13:14 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
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766 |
by rlwoltz Mon, 2019-03-11 18:32 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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770 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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772 |
by ac.research Mon, 2018-05-14 08:27 |
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What is the expected behaviour when minimizing a jump edge? by bio_james » Wed, 2017-12-13 09:13 |
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774 |
by bio_james Wed, 2017-12-13 09:13 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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776 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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clustering ligand binding mood by ligand RMSD by rohi » Tue, 2021-01-26 21:11 |
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787 |
by brownbp1 Tue, 2021-02-09 12:12 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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788 |
by dgront Thu, 2021-02-11 08:30 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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789 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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791 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed) by sgaray » Thu, 2021-06-24 14:47 |
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795 |
by sgaray Fri, 2021-06-25 11:26 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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797 |
by rmoretti Mon, 2020-10-26 19:52 |
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enzyme design implementation by rohi » Wed, 2020-12-16 09:54 |
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798 |
by rmoretti Tue, 2021-02-09 11:30 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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799 |
by ela Fri, 2018-08-31 02:53 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
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802 |
by rmoretti Tue, 2021-02-09 12:02 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
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805 |
by rmoretti Tue, 2021-02-09 09:37 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
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811 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
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812 |
by rmoretti Tue, 2020-10-13 11:40 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
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812 |
by hajar Wed, 2020-06-10 11:17 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
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813 |
by rmoretti Tue, 2021-02-09 12:35 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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816 |
by amelie.stein Mon, 2020-09-28 10:41 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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826 |
by vmulligan Mon, 2020-06-29 13:09 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
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834 |
by matteoferla Tue, 2020-04-14 03:36 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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835 |
by sheehajh Fri, 2020-02-21 12:41 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
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841 |
by pci112 Thu, 2021-03-25 01:44 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
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844 |
by matteoferla Fri, 2020-07-24 03:06 |
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error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
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845 |
by rmoretti Tue, 2021-02-09 12:19 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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847 |
by matteoferla Sat, 2020-06-20 03:56 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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849 |
by matteoferla Wed, 2020-01-01 04:30 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
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852 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
2 |
855 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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869 |
by rmoretti Mon, 2019-11-04 12:54 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
875 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
1 |
876 |
by smlewis Wed, 2020-03-04 07:40 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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877 |
by rmoretti Mon, 2019-08-26 14:52 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
883 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
0 |
890 |
by wentlewi Sat, 2020-05-16 08:06 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
1 |
891 |
by renedominik Wed, 2020-02-12 06:16 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
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893 |
by hltorresvera Tue, 2021-02-09 10:44 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
895 |
by rmoretti Wed, 2021-03-17 13:52 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
2 |
896 |
by szcshr123 Fri, 2021-02-26 14:41 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
899 |
by smlewis Wed, 2019-05-29 13:21 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
902 |
by rmoretti Tue, 2019-07-09 15:59 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
902 |
by matteoferla Tue, 2020-06-23 10:58 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
3 |
904 |
by zhoubin Mon, 2021-03-01 22:11 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
1 |
907 |
by rmoretti Wed, 2020-04-01 10:10 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
924 |
by rmoretti Sat, 2019-03-30 12:10 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
1 |
927 |
by connyyu Thu, 2019-04-18 03:26 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
929 |
by smlewis Fri, 2019-06-28 13:56 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
3 |
932 |
by danpf Mon, 2021-05-10 10:04 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
0 |
944 |
by Jhreed Fri, 2016-07-08 13:44 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
1 |
946 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
1 |
961 |
by dfcoelho Tue, 2020-02-04 07:45 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
1 |
962 |
by rmoretti Tue, 2021-02-09 13:44 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
1 |
962 |
by rmoretti Wed, 2019-09-18 10:49 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
962 |
by jeliazkov Fri, 2019-05-03 07:00 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
1 |
965 |
by jkleman Thu, 2020-01-16 11:05 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
2 |
970 |
by JW_24 Wed, 2020-09-23 01:27 |
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