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Rosetta 3 - General

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Normal topic RMSD filter
by Soler » Sat, 2022-01-15 22:09
0
520 by Soler
Sat, 2022-01-15 22:09
Normal topic What is virtual atom means in a params file and how to generate it?
by JasonIsaac » Fri, 2022-11-04 04:53
4
525 by JasonIsaac
Mon, 2022-11-07 19:15
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
526 by mb0261
Mon, 2022-09-26 07:50
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
542 by Antonia
Wed, 2021-06-16 12:30
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
542 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
542 by Soler
Sat, 2021-11-20 23:41
Normal topic Obtain score during prediction
by CameronJA » Mon, 2021-06-14 16:12
0
544 by CameronJA
Mon, 2021-06-14 16:12
Normal topic Output and Input Tutorial
by jgustat » Fri, 2022-07-01 13:07
2
546 by jgustat
Fri, 2022-07-01 13:26
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
0
553 by rohi
Fri, 2021-06-25 10:29
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
554 by ate
Wed, 2021-06-16 19:19
Normal topic Rosetta for design of artifical metalloenzyme
by Delfosse57 » Thu, 2022-05-19 21:47
1
573 by matteoferla
Fri, 2022-06-03 01:09
Normal topic Inconsistent scoring by "aa_composition" term
by chenna » Thu, 2022-02-24 03:00
1
577 by vmulligan
Thu, 2022-03-03 18:48
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
586 by dkesar
Fri, 2021-06-04 19:09
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
0
600 by cryosky
Sun, 2021-09-26 13:24
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
0
608 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic RNA update library
by Anne Klein » Mon, 2022-05-16 16:04
2
609 by Anne Klein
Tue, 2022-05-24 21:38
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
0
632 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
3
635 by rmoretti
Mon, 2022-07-18 11:56
Normal topic Quick mysql output question
by pedro.guillem » Thu, 2020-07-23 03:45
0
635 by pedro.guillem
Thu, 2020-07-23 03:45
Normal topic The hbond for REF2015
by asbelx » Mon, 2022-06-06 06:07
2
639 by asbelx
Mon, 2022-06-06 23:15
Normal topic Repeated entries in silent file
by almeida85 » Fri, 2022-08-05 02:52
4
641 by almeida85
Thu, 2022-08-11 00:29
Normal topic connecting pdb files
by Hyun » Wed, 2021-11-17 22:32
1
642 by ajasja
Thu, 2021-11-18 00:33
Normal topic -ignore_unrecognized_res doesn't work
by e3lm » Fri, 2022-05-06 14:47
2
653 by e3lm
Fri, 2022-05-06 16:10
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
660 by Corvin
Wed, 2021-05-19 07:54
Normal topic Make fragments
by jeanramos » Mon, 2020-07-13 00:56
0
664 by jeanramos
Mon, 2020-07-13 00:56
Normal topic How to create a native file for Protein-Protein docking
by Kotimedidhi » Mon, 2020-06-22 08:10
0
666 by Kotimedidhi
Mon, 2020-06-22 08:10
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
1
667 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
671 by rvandamme
Mon, 2021-02-01 13:39
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
674 by LanMei
Tue, 2022-03-22 20:45
Normal topic Output "per-residue" energy score to database
by pedro.guillem » Thu, 2020-05-14 04:22
0
677 by pedro.guillem
Thu, 2020-05-14 04:22
Normal topic Weekly releases for commercial users?
by rjacak » Tue, 2022-03-22 07:48
2
688 by rjacak
Thu, 2022-03-31 10:53
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
1
693 by sia
Tue, 2022-07-05 05:47
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
693 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic I_sc
by Soler » Sat, 2022-02-12 00:16
1
703 by rmoretti
Fri, 2022-02-18 11:14
Normal topic ab initio structure modeling
by pci112 » Mon, 2021-04-12 08:07
0
703 by pci112
Mon, 2021-04-12 08:12
Normal topic Compile C++ Rosetta to Pyrosetta ERROR
by michelleqyh » Fri, 2020-08-21 09:00
0
704 by michelleqyh
Fri, 2020-08-21 09:00
Normal topic Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex
by Sunidhi » Sun, 2020-11-01 11:00
0
707 by Sunidhi
Sun, 2020-11-01 11:01
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
709 by ate
Sat, 2021-05-01 02:22
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
711 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
0
719 by matteoferla
Wed, 2020-07-22 03:08
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
726 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
730 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates)
by haom » Tue, 2020-09-01 13:21
0
732 by haom
Tue, 2020-09-01 18:50
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
732 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
733 by lanselibai
Wed, 2021-06-23 14:53
Normal topic abinitio demo is not progressing - new install
by jtpi6174 » Thu, 2022-03-24 03:49
2
737 by jtpi6174
Thu, 2022-03-24 09:43
Normal topic Rosetta and design of ligand binding site
by rohi » Mon, 2021-03-15 06:00
0
738 by rohi
Mon, 2021-03-15 06:31
Normal topic Cterm_amidation
by G Mustafa » Wed, 2021-11-03 08:52
1
740 by gezmi
Sat, 2021-11-06 15:26
Normal topic Unrecognized atom parameter with denovo_density
by kalabharath » Mon, 2020-06-29 06:59
0
742 by kalabharath
Mon, 2020-06-29 06:59
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
749 by rmoretti
Tue, 2021-11-30 07:41
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
753 by nferruz
Fri, 2020-08-28 06:05
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
757 by YuFei
Wed, 2020-04-22 17:27
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
758 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Multi-metric enzyme docking with substrate
by Wang Zhe » Sat, 2021-11-20 04:41
1
761 by matteoferla
Mon, 2021-12-13 02:27
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
0
766 by ate
Sat, 2021-05-01 02:52
Normal topic parameter file of GLU protonated (GLU_P1.params)
by rohi » Sat, 2021-06-05 20:44
1
766 by nannemdp
Sun, 2021-06-06 09:26
Normal topic Structure refinement for helical assembles using Rosetta
by xiaoyanzi » Thu, 2020-06-18 00:34
0
767 by xiaoyanzi
Thu, 2020-06-18 00:36
Normal topic calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon)
by rlwoltz » Tue, 2021-08-03 23:26
0
783 by rlwoltz
Tue, 2021-08-03 23:26
Normal topic Blast error for rosetta antibody: No argument value given for Query file
by dngusdnr1 » Tue, 2021-06-08 17:32
1
786 by taylorjones
Wed, 2021-06-09 16:30
Normal topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:17
0
787 by yinasun
Fri, 2019-07-26 02:17
Normal topic how to perform model quality assessment of rosetta generated models?
by Danielsebas » Tue, 2019-09-24 05:03
0
790 by Danielsebas
Tue, 2019-09-24 05:03
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
806 by haom
Wed, 2020-09-09 09:19
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
813 by LTJ
Mon, 2020-07-06 14:13
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
814 by Kazu
Wed, 2020-05-20 11:58
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
0
818 by matteoferla
Fri, 2021-02-26 07:12
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
0
820 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
830 by matteoferla
Sun, 2020-03-22 05:29
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
831 by rohi
Thu, 2020-10-15 10:28
Normal topic Help - Protein-Protein interface design
by Dinesh Kumar » Thu, 2021-01-28 00:47
1
838 by rmoretti
Tue, 2021-02-09 10:29
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
841 by jmaly
Wed, 2020-09-02 16:16
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
844 by ahuls1
Thu, 2021-07-29 13:23
Normal topic the question about ddg of disulfide bond mutants
by asbelx » Sun, 2021-08-29 06:40
1
851 by asbelx
Wed, 2021-09-08 23:19
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
0
854 by pmit
Thu, 2018-05-03 01:48
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
854 by zivben
Sat, 2021-07-31 08:16
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
3
858 by ssrb
Tue, 2022-07-05 11:07
Normal topic Denovo density excess map input and segmentation
by ahmadkhalifa » Mon, 2018-04-30 07:28
0
859 by ahmadkhalifa
Fri, 2018-05-04 07:50
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
0
862 by Anpu
Thu, 2018-09-27 23:36
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
866 by rmoretti
Wed, 2021-07-14 07:07
Normal topic Rosetta Enzyme design cst block raises error
by cryosky » Thu, 2021-09-16 08:47
1
877 by cryosky
Fri, 2021-09-17 22:04
Normal topic Better minimization with Rosetta
by Elijah_Hix » Wed, 2021-07-28 13:53
1
878 by matteoferla
Mon, 2021-08-09 01:53
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
893 by matteoferla
Thu, 2021-04-01 04:06
Normal topic How to use the <CavityVolume> filter in the released version of Rosetta
by BioPython » Sun, 2019-05-12 20:07
0
901 by BioPython
Sun, 2019-05-12 20:07
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
903 by rmoretti
Tue, 2021-04-20 13:06
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
0
904 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
0
905 by yangshen12
Fri, 2018-10-26 12:34
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
909 by rmoretti
Wed, 2021-06-23 02:17
Normal topic RosettaCM: threading okay, but hybridize loses many secondary structure
by lanselibai » Wed, 2021-06-23 13:51
2
911 by lanselibai
Thu, 2021-06-24 10:16
Normal topic Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal?
by ericlang » Mon, 2021-07-05 05:43
2
916 by ericlang
Mon, 2021-07-05 06:59
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
916 by matteoferla
Tue, 2020-07-14 01:51
Normal topic RosettaCM: "Ligands must be added to all templates"
by lanselibai » Tue, 2021-06-22 10:42
2
916 by lanselibai
Wed, 2021-06-23 13:21
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
917 by obdulia
Wed, 2018-04-18 00:45
Normal topic Mutate multidomain protein
by frankfurter1 » Wed, 2018-05-09 04:40
0
918 by frankfurter1
Wed, 2018-05-09 04:40
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
0
930 by ac.research
Mon, 2018-05-14 08:27
Normal topic contribution of interface residues in binding energy
by rohi » Wed, 2021-01-20 07:33
1
930 by rmoretti
Wed, 2021-01-20 07:39
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
0
931 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
0
931 by bazzoli
Wed, 2018-10-10 01:59
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
932 by rmoretti
Tue, 2021-02-09 10:48
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
0
932 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Explicit water
by tsztain » Wed, 2021-08-25 05:54
1
942 by matteoferla
Thu, 2021-09-02 03:50
Normal topic ligand docking
by hong wei » Thu, 2021-11-18 05:01
2
945 by hong wei
Thu, 2021-11-25 02:46
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