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Rosetta 3 - General
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RMSD filter by Soler » Sat, 2022-01-15 22:09 |
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520 |
by Soler Sat, 2022-01-15 22:09 |
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What is virtual atom means in a params file and how to generate it？ by JasonIsaac » Fri, 2022-11-04 04:53 |
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525 |
by JasonIsaac Mon, 2022-11-07 19:15 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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526 |
by mb0261 Mon, 2022-09-26 07:50 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
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542 |
by Antonia Wed, 2021-06-16 12:30 |
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score.sc only shows total_score and with all zeros by johnnytam100 » Mon, 2022-06-06 20:04 |
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542 |
by johnnytam100 Tue, 2022-06-07 19:18 |
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SecundaryStructure Filter by Soler » Sat, 2021-11-20 23:41 |
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542 |
by Soler Sat, 2021-11-20 23:41 |
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Obtain score during prediction by CameronJA » Mon, 2021-06-14 16:12 |
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544 |
by CameronJA Mon, 2021-06-14 16:12 |
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Output and Input Tutorial by jgustat » Fri, 2022-07-01 13:07 |
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546 |
by jgustat Fri, 2022-07-01 13:26 |
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enzyme design and scoring function by rohi » Fri, 2021-06-25 10:29 |
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553 |
by rohi Fri, 2021-06-25 10:29 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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554 |
by ate Wed, 2021-06-16 19:19 |
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Rosetta for design of artifical metalloenzyme by Delfosse57 » Thu, 2022-05-19 21:47 |
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573 |
by matteoferla Fri, 2022-06-03 01:09 |
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Inconsistent scoring by "aa_composition" term by chenna » Thu, 2022-02-24 03:00 |
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577 |
by vmulligan Thu, 2022-03-03 18:48 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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586 |
by dkesar Fri, 2021-06-04 19:09 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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600 |
by cryosky Sun, 2021-09-26 13:24 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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608 |
by whiteqiu Mon, 2021-03-01 18:32 |
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RNA update library by Anne Klein » Mon, 2022-05-16 16:04 |
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609 |
by Anne Klein Tue, 2022-05-24 21:38 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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632 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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XML schema file taken from Rosie docking giving errors in Rosetta Scripts by Delfosse57 » Mon, 2022-07-18 10:51 |
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635 |
by rmoretti Mon, 2022-07-18 11:56 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
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635 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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The hbond for REF2015 by asbelx » Mon, 2022-06-06 06:07 |
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639 |
by asbelx Mon, 2022-06-06 23:15 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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641 |
by almeida85 Thu, 2022-08-11 00:29 |
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connecting pdb files by Hyun » Wed, 2021-11-17 22:32 |
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642 |
by ajasja Thu, 2021-11-18 00:33 |
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-ignore_unrecognized_res doesn't work by e3lm » Fri, 2022-05-06 14:47 |
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653 |
by e3lm Fri, 2022-05-06 16:10 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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660 |
by Corvin Wed, 2021-05-19 07:54 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
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664 |
by jeanramos Mon, 2020-07-13 00:56 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
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666 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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667 |
by jadolfbr Sat, 2022-02-12 23:16 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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671 |
by rvandamme Mon, 2021-02-01 13:39 |
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score against rmsd plot of designs by LanMei » Mon, 2022-03-21 22:46 |
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674 |
by LanMei Tue, 2022-03-22 20:45 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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677 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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Weekly releases for commercial users? by rjacak » Tue, 2022-03-22 07:48 |
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688 |
by rjacak Thu, 2022-03-31 10:53 |
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RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
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693 |
by sia Tue, 2022-07-05 05:47 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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693 |
by adityapadhi Wed, 2020-06-24 01:29 |
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I_sc by Soler » Sat, 2022-02-12 00:16 |
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703 |
by rmoretti Fri, 2022-02-18 11:14 |
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ab initio structure modeling by pci112 » Mon, 2021-04-12 08:07 |
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703 |
by pci112 Mon, 2021-04-12 08:12 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
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704 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Comparatively modelled chains are far apart in final structure while the template pdb has all chains in a close-knit complex by Sunidhi » Sun, 2020-11-01 11:00 |
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707 |
by Sunidhi Sun, 2020-11-01 11:01 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
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709 |
by ate Sat, 2021-05-01 02:22 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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711 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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719 |
by matteoferla Wed, 2020-07-22 03:08 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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726 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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730 |
by chrisHKL Mon, 2020-02-17 09:12 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
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732 |
by haom Tue, 2020-09-01 18:50 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
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732 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
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733 |
by lanselibai Wed, 2021-06-23 14:53 |
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abinitio demo is not progressing - new install by jtpi6174 » Thu, 2022-03-24 03:49 |
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737 |
by jtpi6174 Thu, 2022-03-24 09:43 |
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Rosetta and design of ligand binding site by rohi » Mon, 2021-03-15 06:00 |
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738 |
by rohi Mon, 2021-03-15 06:31 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
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740 |
by gezmi Sat, 2021-11-06 15:26 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
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742 |
by kalabharath Mon, 2020-06-29 06:59 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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749 |
by rmoretti Tue, 2021-11-30 07:41 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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753 |
by nferruz Fri, 2020-08-28 06:05 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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757 |
by YuFei Wed, 2020-04-22 17:27 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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758 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
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761 |
by matteoferla Mon, 2021-12-13 02:27 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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766 |
by ate Sat, 2021-05-01 02:52 |
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parameter file of GLU protonated (GLU_P1.params) by rohi » Sat, 2021-06-05 20:44 |
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766 |
by nannemdp Sun, 2021-06-06 09:26 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
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767 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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calcium metal nomenclature: Rosetta_cm confusing HETATM CA (calcium) with ATOM CA (alpha-carbon) by rlwoltz » Tue, 2021-08-03 23:26 |
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783 |
by rlwoltz Tue, 2021-08-03 23:26 |
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Blast error for rosetta antibody: No argument value given for Query file by dngusdnr1 » Tue, 2021-06-08 17:32 |
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786 |
by taylorjones Wed, 2021-06-09 16:30 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
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787 |
by yinasun Fri, 2019-07-26 02:17 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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790 |
by Danielsebas Tue, 2019-09-24 05:03 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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806 |
by haom Wed, 2020-09-09 09:19 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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813 |
by LTJ Mon, 2020-07-06 14:13 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
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814 |
by Kazu Wed, 2020-05-20 11:58 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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818 |
by matteoferla Fri, 2021-02-26 07:12 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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820 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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830 |
by matteoferla Sun, 2020-03-22 05:29 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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831 |
by rohi Thu, 2020-10-15 10:28 |
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Help - Protein-Protein interface design by Dinesh Kumar » Thu, 2021-01-28 00:47 |
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838 |
by rmoretti Tue, 2021-02-09 10:29 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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841 |
by jmaly Wed, 2020-09-02 16:16 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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844 |
by ahuls1 Thu, 2021-07-29 13:23 |
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the question about ddg of disulfide bond mutants by asbelx » Sun, 2021-08-29 06:40 |
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851 |
by asbelx Wed, 2021-09-08 23:19 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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854 |
by pmit Thu, 2018-05-03 01:48 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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854 |
by zivben Sat, 2021-07-31 08:16 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
3 |
858 |
by ssrb Tue, 2022-07-05 11:07 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
0 |
859 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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862 |
by Anpu Thu, 2018-09-27 23:36 |
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Scoring in Rosetta by Elijah_Hix » Wed, 2021-07-14 06:48 |
1 |
866 |
by rmoretti Wed, 2021-07-14 07:07 |
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Rosetta Enzyme design cst block raises error by cryosky » Thu, 2021-09-16 08:47 |
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877 |
by cryosky Fri, 2021-09-17 22:04 |
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Better minimization with Rosetta by Elijah_Hix » Wed, 2021-07-28 13:53 |
1 |
878 |
by matteoferla Mon, 2021-08-09 01:53 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
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893 |
by matteoferla Thu, 2021-04-01 04:06 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
901 |
by BioPython Sun, 2019-05-12 20:07 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
1 |
903 |
by rmoretti Tue, 2021-04-20 13:06 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
904 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
0 |
905 |
by yangshen12 Fri, 2018-10-26 12:34 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
1 |
909 |
by rmoretti Wed, 2021-06-23 02:17 |
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RosettaCM: threading okay, but hybridize loses many secondary structure by lanselibai » Wed, 2021-06-23 13:51 |
2 |
911 |
by lanselibai Thu, 2021-06-24 10:16 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
2 |
916 |
by ericlang Mon, 2021-07-05 06:59 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
0 |
916 |
by matteoferla Tue, 2020-07-14 01:51 |
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RosettaCM: "Ligands must be added to all templates" by lanselibai » Tue, 2021-06-22 10:42 |
2 |
916 |
by lanselibai Wed, 2021-06-23 13:21 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
917 |
by obdulia Wed, 2018-04-18 00:45 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
0 |
918 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
0 |
930 |
by ac.research Mon, 2018-05-14 08:27 |
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contribution of interface residues in binding energy by rohi » Wed, 2021-01-20 07:33 |
1 |
930 |
by rmoretti Wed, 2021-01-20 07:39 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
0 |
931 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
931 |
by bazzoli Wed, 2018-10-10 01:59 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
1 |
932 |
by rmoretti Tue, 2021-02-09 10:48 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
0 |
932 |
by matteoferla Fri, 2020-04-10 02:40 |
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Explicit water by tsztain » Wed, 2021-08-25 05:54 |
1 |
942 |
by matteoferla Thu, 2021-09-02 03:50 |
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ligand docking by hong wei » Thu, 2021-11-18 05:01 |
2 |
945 |
by hong wei Thu, 2021-11-25 02:46 |
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