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Rosetta 3 - General
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
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2,612 |
by matteoferla Thu, 2018-10-04 01:30 |
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what is 05.2009 ideal coordinates by Lindsay » Tue, 2014-09-23 20:36 |
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3,224 |
by rmoretti Mon, 2014-09-29 13:45 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
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3,124 |
by aaxx Wed, 2019-11-06 01:44 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
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2,862 |
by SergeyP Mon, 2018-11-12 09:19 |
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Rosetta Dock with MPI / PBS by edpryor » Wed, 2012-09-05 11:04 |
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6,101 |
by smlewis Mon, 2014-04-21 06:47 |
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When does Rosetta switch from centroid to FA mode? by MarkW » Fri, 2015-07-03 04:48 |
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3,273 |
by rmoretti Sun, 2015-07-05 14:28 |
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why energy is positive? by albumns » Tue, 2014-12-23 00:05 |
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4,106 |
by rmoretti Mon, 2015-02-09 11:21 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
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2,263 |
by smlewis Mon, 2018-11-19 13:20 |
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how build (N-terminal 17 residues) structre /fragment file generation by venkatazb » Wed, 2016-07-27 23:56 |
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3,115 |
by smlewis Fri, 2016-07-29 07:43 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
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2,924 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
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3,547 |
by sumukh21 Mon, 2014-04-21 06:47 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
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5,432 |
by smlewis Mon, 2014-04-21 06:47 |
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Problems with output control by Sunyp_IM » Thu, 2017-06-22 15:30 |
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3,638 |
by rmoretti Wed, 2017-06-28 01:33 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
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2,163 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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backrub score different from calculated score by attesor » Wed, 2014-04-09 07:34 |
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3,438 |
by rmoretti Thu, 2014-04-10 07:38 |
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Problem with outputing decoys in the process of AbinitioRelax by MA » Thu, 2017-07-13 23:27 |
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2,544 |
by rmoretti Thu, 2017-08-03 08:50 |
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Protein folding using Monte Carlo derived techniques and implicit solvation by hefeweizen » Tue, 2013-12-10 06:30 |
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3,853 |
by rmoretti Mon, 2014-04-21 06:48 |
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Molecular oxygen by matteoferla » Sat, 2018-02-24 06:05 |
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3,053 |
by matteoferla Mon, 2018-02-26 02:05 |
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How to make a resfile by dflaher » Fri, 2017-11-03 10:26 |
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4,053 |
by smlewis Wed, 2017-11-08 12:08 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
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4,754 |
by jurkm Mon, 2014-04-21 06:47 |
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Biopython error in mac os x by vinodh » Tue, 2012-06-12 12:23 |
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4,022 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Error with simple_cycpep_predict protocol while using a native pdb file by Florent Langenfeld » Tue, 2019-03-26 10:05 |
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2,203 |
by Florent Langenfeld Tue, 2020-09-22 03:03 |
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Bind a Ligand to RNA by hdavis9 » Wed, 2010-07-14 09:07 |
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3,002 |
by smlewis Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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3,394 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
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5,426 |
by Lindsay Mon, 2014-04-21 06:48 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
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1,658 |
by zhoubin Mon, 2021-03-01 22:11 |
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Parallel computing in RosettaDock3.1? by xhluo » Fri, 2010-09-03 02:31 |
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3,343 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
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5,338 |
by smlewis Mon, 2014-04-21 06:47 |
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Information about “membrane_highres_Menv_smooth.wts” by Groros » Sun, 2011-10-02 03:59 |
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3,591 |
by smlewis Mon, 2014-04-21 06:47 |
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Solving van der waals clashes in a transmembrane protein model with rosetta by doranhen » Wed, 2012-12-05 00:12 |
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3,543 |
by smlewis Mon, 2014-04-21 06:47 |
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calculate low-resolution total docking score for a input pdb by jasnyderjr » Fri, 2015-12-11 23:08 |
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3,572 |
by rmoretti Wed, 2015-12-16 11:22 |
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how to use rosettadesign to do mutations on protein structure by lqzhang » Thu, 2010-03-04 07:43 |
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3,902 |
by vanita Mon, 2014-04-21 06:47 |
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Save silent results to individual directory by process ID by Payne » Sat, 2022-09-24 05:23 |
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652 |
by rmoretti Thu, 2022-09-29 00:15 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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4,013 |
by smlewis Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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4,748 |
by smlewis Mon, 2014-04-21 06:47 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
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2,549 |
by ylwang Wed, 2018-11-14 03:03 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
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3,190 |
by scombs Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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3,461 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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9,787 |
by rmoretti Mon, 2015-02-09 09:09 |
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pmut and scoring by ldlamini » Tue, 2021-09-14 00:46 |
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1,644 |
by matteoferla Mon, 2021-09-20 06:05 |
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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596 |
by rmoretti Mon, 2022-11-14 07:27 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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3,619 |
by tsjain Mon, 2014-04-21 06:47 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
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4,088 |
by rmoretti Mon, 2014-04-21 06:48 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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2,085 |
by rmoretti Sat, 2019-03-30 12:12 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
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1,634 |
by danpf Mon, 2021-05-10 10:04 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
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3,035 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,554 |
by jadolfbr Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
3 |
4,837 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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4,695 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
3 |
3,062 |
by rmoretti Mon, 2016-03-07 14:20 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,411 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
3 |
3,449 |
by IAndre Mon, 2014-04-21 06:47 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
3 |
4,770 |
by Ashafix Mon, 2014-04-21 06:48 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
3 |
3,098 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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553 |
by ldx022 Sat, 2023-03-11 16:53 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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1,822 |
by ylwang Tue, 2020-03-24 19:35 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
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3,269 |
by smlewis Mon, 2014-04-21 06:47 |
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Failure to find libraries during build by NCallahan » Mon, 2010-07-26 15:41 |
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4,892 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaHoles? by kbala » Thu, 2009-07-30 16:52 |
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3,529 |
by smlewis Mon, 2014-04-21 06:47 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
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4,313 |
by dgront Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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2,754 |
by jadolfbr Wed, 2019-06-12 20:17 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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3,193 |
by fred Fri, 2014-04-04 11:34 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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1,442 |
by matteoferla Fri, 2021-08-20 08:37 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
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3,534 |
by alejandro Mon, 2014-04-21 06:47 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
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1,159 |
by ssrb Tue, 2022-07-05 11:07 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
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4,455 |
by rmoretti Wed, 2015-08-12 15:03 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
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4,124 |
by einew Mon, 2014-04-21 06:47 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
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3,281 |
by phanvy Wed, 2014-07-02 23:32 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
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3,512 |
by everyday847 Tue, 2017-11-28 13:07 |
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rosetta on snow leopard? by nitroamos » Thu, 2009-10-01 17:07 |
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4,601 |
by nitroamos Mon, 2014-04-21 06:47 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
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486 |
by rmoretti Mon, 2023-05-15 15:23 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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3,328 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
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2,333 |
by smlewis Wed, 2018-04-04 10:42 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,275 |
by smlewis Mon, 2014-04-21 06:47 |
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Relax protocol details for Rosetta 3.1 by Matthys » Sun, 2012-01-15 10:00 |
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4,185 |
by rmoretti Mon, 2014-04-21 06:47 |
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[Mover] is not known to the MoverFactory by Jhreed » Fri, 2016-08-05 12:23 |
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3,877 |
by msardejani Sun, 2016-08-07 17:49 |
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Can I compare binding affinity of different ligands using Rosetta? by zg148119@ohio.edu » Sun, 2020-12-06 11:30 |
4 |
2,796 |
by nannemdp Fri, 2021-02-05 06:49 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
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3,962 |
by smlewis Mon, 2014-04-21 06:47 |
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Ab initio/relax flag file setup by w107kdk » Fri, 2009-08-28 11:49 |
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4,304 |
by w107kdk Mon, 2014-04-21 06:47 |
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rs filter for terms in .sc files by gw » Sat, 2012-08-18 16:20 |
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4,427 |
by gw Mon, 2014-04-21 06:47 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
4 |
2,527 |
by decrSTL Tue, 2019-08-27 10:24 |
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multiple cst files by logandonaldson » Wed, 2013-03-20 12:16 |
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4,161 |
by logandonaldson Mon, 2014-04-21 06:47 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
4 |
3,180 |
by rmoretti Wed, 2018-11-21 14:11 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
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5,054 |
by nilkoeg Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
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4,412 |
by pardave Mon, 2014-04-21 06:47 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
4 |
3,371 |
by rmoretti Mon, 2018-01-15 15:24 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
4 |
2,413 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
4 |
4,231 |
by zaldini Fri, 2015-01-02 05:38 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
4 |
4,417 |
by lzx32 Mon, 2014-04-21 06:47 |
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Loop extensions at the end of chains by japgar » Mon, 2010-07-26 12:35 |
4 |
3,967 |
by japgar Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
7,292 |
by rmoretti Tue, 2019-07-09 10:29 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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3,809 |
by linucks Fri, 2018-02-23 08:08 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
4 |
2,607 |
by maruhuang Thu, 2019-09-26 18:55 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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5,622 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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4,137 |
by ac.research Mon, 2017-09-04 16:43 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
4 |
4,380 |
by lanselibai Tue, 2014-12-16 10:48 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
4 |
3,927 |
by pardave Mon, 2014-04-21 06:47 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
4 |
4,248 |
by zaldini Wed, 2015-01-07 20:35 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
4 |
4,423 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
10,941 |
by smlewis Mon, 2014-04-21 06:47 |
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