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Rosetta 3 - General

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Normal topic NC atom type [Solved]
by franfdez » Tue, 2012-02-07 16:05
3
4,136 by franfdez
Mon, 2014-04-21 06:47
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
4,714 by rmoretti
Tue, 2014-04-01 08:12
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
4,425 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Cyclizing .pdb of a linear chain.
by jcminerlanl » Wed, 2017-07-05 23:56
3
3,331 by jcminerlanl
Thu, 2017-07-06 09:22
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
4,314 by rmoretti
Wed, 2014-10-29 14:30
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
4,434 by MRH
Mon, 2014-04-21 06:48
Normal topic Conversion from Dihedral angle representation to Cartesian representation
by rodrigo.faccioli » Sat, 2012-02-25 11:57
3
16,824 by charlie.strauss
Fri, 2016-09-02 10:08
Normal topic Adding new files using rosetta classes went wrong
by Jeremy1990 » Sun, 2015-04-26 01:07
3
4,018 by rmoretti
Thu, 2015-04-30 16:09
Normal topic Calling a Rosetta xml script in a Python script gives fail to validate error
by ahmadkhalifa » Tue, 2018-03-06 08:00
3
4,551 by rmoretti
Mon, 2018-03-19 12:35
Normal topic XML schema file taken from Rosie docking giving errors in Rosetta Scripts
by Delfosse57 » Mon, 2022-07-18 10:51
3
1,430 by rmoretti
Mon, 2022-07-18 11:56
Normal topic build local user guide
by coomteng@gmail.com » Wed, 2018-03-28 13:55
3
2,954 by coomteng@gmail.com
Wed, 2018-03-28 14:58
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
4,637 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
5,278 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to get the GDT_TS?
by JadAbbass » Thu, 2013-09-05 11:59
3
5,839 by rmoretti
Mon, 2014-04-21 06:48
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
5,380 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with running turtorial of rna denovo
by myle » Fri, 2017-04-14 09:23
3
3,348 by rmoretti
Tue, 2017-04-18 13:49
Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
4,420 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
3,378 by smlewis
Mon, 2014-04-21 06:47
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
4,058 by frits
Mon, 2014-04-21 06:48
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
5,644 by pholland
Mon, 2014-04-21 06:47
Normal topic how to keep modeling ignored ERROR?
by eunwook » Sat, 2013-04-27 05:44
3
4,079 by eunwook
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
4,451 by cneale
Fri, 2014-03-21 18:13
Normal topic How to specify constraints during fold-and-dock?
by sarah_b » Tue, 2020-05-12 01:55
3
2,645 by matteoferla
Thu, 2020-05-14 07:01
Normal topic ddG = dGmutant ‐ dGwildtype
by ela » Thu, 2018-07-26 09:17
3
3,657 by ela
Thu, 2018-08-09 08:04
Normal topic Question about homology modelling
by DmitriiN » Sun, 2016-08-21 13:44
3
3,912 by smlewis
Mon, 2016-08-22 10:28
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
4,307 by vanita
Mon, 2014-04-21 06:47
Normal topic Fragments for short peptides using Robetta
by renedominik » Wed, 2018-05-16 14:21
3
3,092 by renedominik
Mon, 2018-06-04 00:04
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
4,906 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta relax application for generating ensemble of structures.
by abhi_pe_acharya » Mon, 2018-02-26 09:08
3
3,947 by ssrb
Tue, 2018-03-06 14:15
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
4,670 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the difference between F and S labeled decoys?
by PaulaBanks » Tue, 2013-08-27 06:09
3
3,653 by PaulaBanks
Mon, 2014-04-21 06:48
Normal topic Potentially incorrect heavyAtoms_end() iterator in core/conformation/Residue.hh
by tsjain » Wed, 2012-08-15 12:20
3
3,350 by smlewis
Mon, 2014-04-21 06:47
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
3,524 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
3,613 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Troubles using RigidBodyTransMover and RigidBodyPerturbMover
by alejandro » Thu, 2011-04-21 06:11
3
3,828 by alejandro
Mon, 2014-04-21 06:47
Normal topic force point mutation with fixbb
by Anonymous » Wed, 2012-06-13 09:15
3
4,135 by smlewis
Mon, 2014-04-21 06:47
Normal topic spline constraint
by jadolfbr » Mon, 2012-06-25 04:43
3
4,134 by smlewis
Mon, 2014-04-21 06:47
Normal topic LHOC script problem in Rosetta Antibody
by ziheng@mit.edu » Thu, 2019-04-25 14:19
3
2,559 by Brian Wiley
Sat, 2023-02-04 23:26
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
5,055 by smlewis
Mon, 2014-04-21 06:47
Normal topic The question about  protonation of Rosetta
by asbelx » Tue, 2017-12-19 05:44
3
4,747 by rmoretti
Mon, 2018-01-15 15:34
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
4,555 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
3,482 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta lack of necessary application
by ylwang » Wed, 2018-11-07 01:13
3
3,010 by rmoretti
Wed, 2018-11-21 13:50
Normal topic [dev] determine which score_type's enabled in create_energy_method?
by ipetrik_ambry » Fri, 2017-10-27 15:37
3
2,956 by rmoretti
Mon, 2017-10-30 12:02
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
2,465 by ylwang
Sat, 2019-11-23 06:26
Normal topic loop modeling
by isengupta13 » Wed, 2011-06-01 15:00
3
4,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic fixbb program
by Lindsay » Tue, 2012-05-08 13:56
3
3,595 by AndrewLeaver-Fay
Mon, 2014-04-21 06:47
Normal topic How to use RotamerDump to access one and two-body energy tables?
by msun » Wed, 2013-01-16 12:26
3
3,406 by msun
Mon, 2014-04-21 06:47
Normal topic Possible Shellshock Patch problem results in no output files being written
by hazards » Wed, 2014-10-22 13:48
3
6,652 by rmoretti
Mon, 2014-11-03 16:39
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
5,340 by smlewis
Mon, 2014-04-21 06:47
Normal topic what option should I use if I want to use the dfire in 3.4
by Lindsay » Thu, 2012-04-12 05:19
3
3,869 by smlewis
Mon, 2014-04-21 06:47
Normal topic Models which are not recorded (Abinitio protocol)
by allan.ferrari » Fri, 2015-08-28 13:39
3
3,729 by rmoretti
Thu, 2015-09-17 12:42
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
3,999 by smlewis
Mon, 2014-04-21 06:47
Normal topic get_distances command in rosetta 3.5
by pramod » Mon, 2014-01-20 11:31
3
3,724 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Simple FoldTree Question
by gipsonb » Wed, 2012-04-25 18:19
3
3,956 by gipsonb
Mon, 2014-04-21 06:47
Normal topic Comparison between two fragment pickers
by qlj » Mon, 2013-09-02 06:34
3
4,032 by rmoretti
Mon, 2014-04-21 06:48
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
4,003 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Peripheral membrane protein modeling
by Fukiishi » Tue, 2018-10-02 02:09
3
3,113 by matteoferla
Thu, 2018-10-04 01:30
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
4,464 by smlewis
Mon, 2014-04-21 06:47
Normal topic acceptable RMSD value in the clustered structures?
by ritacc18 » Wed, 2013-06-19 14:53
3
9,444 by rmoretti
Mon, 2014-04-21 06:48
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
4,666 by rmoretti
Mon, 2015-02-09 11:21
Normal topic what is 05.2009 ideal coordinates
by Lindsay » Tue, 2014-09-23 20:36
3
3,719 by rmoretti
Mon, 2014-09-29 13:45
Normal topic Can I thread a two chained structure in RosettaCM?
by ahmadkhalifa » Mon, 2018-01-08 09:41
3
3,645 by aaxx
Wed, 2019-11-06 01:44
Normal topic Rosetta-based projects using and licensing
by SergeyP » Fri, 2018-10-26 15:45
3
3,396 by SergeyP
Mon, 2018-11-12 09:19
Normal topic Rosetta Dock with MPI / PBS
by edpryor » Wed, 2012-09-05 11:04
3
6,617 by smlewis
Mon, 2014-04-21 06:47
Normal topic When does Rosetta switch from centroid to FA mode?
by MarkW » Fri, 2015-07-03 04:48
3
3,716 by rmoretti
Sun, 2015-07-05 14:28
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
5,188 by nitroamos
Mon, 2014-04-21 06:47
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
3,995 by sumukh21
Mon, 2014-04-21 06:47
Normal topic Problem with HETATM entries in PDB file
by asmi » Fri, 2011-05-20 10:17
3
6,043 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problems with output control
by Sunyp_IM » Thu, 2017-06-22 15:30
3
4,305 by rmoretti
Wed, 2017-06-28 01:33
Normal topic Hydrogen bond detection and shape complementarity
by sujigeorge1979 » Fri, 2019-06-14 02:39
3
2,629 by sujigeorge1979
Thu, 2019-06-27 01:30
Normal topic Is it better to have smaller nstruct but many runs?
by Loki01 » Mon, 2018-11-19 11:50
3
2,747 by smlewis
Mon, 2018-11-19 13:20
Normal topic how build (N-terminal 17 residues) structre /fragment file generation
by venkatazb » Wed, 2016-07-27 23:56
3
3,570 by smlewis
Fri, 2016-07-29 07:43
Normal topic Design constraints on pairs of residues
by SenyorDrew » Mon, 2017-10-02 07:25
3
3,439 by SenyorDrew
Mon, 2017-11-13 11:44
Normal topic How to make a resfile
by dflaher » Fri, 2017-11-03 10:26
3
4,989 by smlewis
Wed, 2017-11-08 12:08
Normal topic backrub score different from calculated score
by attesor » Wed, 2014-04-09 07:34
3
3,941 by rmoretti
Thu, 2014-04-10 07:38
Normal topic Problem with outputing decoys in the process of AbinitioRelax
by MA » Thu, 2017-07-13 23:27
3
2,980 by rmoretti
Thu, 2017-08-03 08:50
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
4,354 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Molecular oxygen
by matteoferla » Sat, 2018-02-24 06:05
3
3,595 by matteoferla
Mon, 2018-02-26 02:05
Normal topic Silent Files
by ctaylor » Tue, 2009-12-22 09:22
3
3,693 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Assertion `build_sets_[ build_set_id ].restype().has( "1HA" )` failed. ERROR:: Exit from: src/protocols/match/upstream/Pr
by alove1 » Sat, 2023-10-28 17:19
3
844 by alove1
Mon, 2023-10-30 13:18
Normal topic first run of abinitio in rosetta 3.2 produces an error right away
by burkheadlab » Fri, 2011-03-04 22:50
3
3,774 by smlewis
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
5,282 by jurkm
Mon, 2014-04-21 06:47
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
4,483 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
2,710 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
3,729 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
5,786 by smlewis
Mon, 2014-04-21 06:47
Normal topic Information about “membrane_highres_Menv_smooth.wts”
by Groros » Sun, 2011-10-02 03:59
3
4,017 by smlewis
Mon, 2014-04-21 06:47
Normal topic ddg calculation
by Lindsay » Thu, 2013-09-12 10:19
3
6,135 by Lindsay
Mon, 2014-04-21 06:48
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
2,403 by zhoubin
Mon, 2021-03-01 22:11
Normal topic Explanations to membrane_abinitio options
by justin » Wed, 2010-02-10 01:14
3
3,428 by justin
Mon, 2014-04-21 06:47
Normal topic Solving van der waals clashes in a transmembrane protein model with rosetta
by doranhen » Wed, 2012-12-05 00:12
3
3,956 by smlewis
Mon, 2014-04-21 06:47
Normal topic calculate low-resolution total docking score for a input pdb
by jasnyderjr » Fri, 2015-12-11 23:08
3
4,076 by rmoretti
Wed, 2015-12-16 11:22
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
3,600 by scombs
Mon, 2014-04-21 06:47
Normal topic Save silent results to individual directory by process ID
by Payne » Sat, 2022-09-24 05:23
3
1,303 by rmoretti
Thu, 2022-09-29 00:15
Normal topic clustering PDBs from docking
by jbujons » Wed, 2024-04-24 08:34
3
383 by rmoretti
Thu, 2024-06-20 13:35
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
4,431 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
5,264 by smlewis
Mon, 2014-04-21 06:47
Normal topic Denovo density didn't output a structure
by ahmadkhalifa » Mon, 2018-02-12 08:10
3
3,060 by ylwang
Wed, 2018-11-14 03:03
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
3,634 by smlewis
Mon, 2014-04-21 06:47
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