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Rosetta 3 - General
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Where is Sicdock application now? Can I find a substitute？ by JasonIsaac » Sun, 2022-11-13 03:41 |
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400 |
by rmoretti Mon, 2022-11-14 07:27 |
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-loops:refine_repack_cycles option not accepted by loopmodel.linuxgccrelease by tsjain » Tue, 2013-02-05 18:47 |
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3,457 |
by tsjain Mon, 2014-04-21 06:47 |
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run Rosetta under windows prompt by skipper » Fri, 2013-12-20 21:16 |
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3,944 |
by rmoretti Mon, 2014-04-21 06:48 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
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1,937 |
by rmoretti Sat, 2019-03-30 12:12 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
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1,427 |
by danpf Mon, 2021-05-10 10:04 |
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sequence_tolerance is very slow when -ms:num_packs > 1 by coomteng@gmail.com » Thu, 2016-08-25 13:17 |
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2,885 |
by coomteng@gmail.com Fri, 2016-08-26 00:01 |
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rosetta on snow leopard? by nitroamos » Thu, 2009-10-01 17:07 |
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4,433 |
by nitroamos Mon, 2014-04-21 06:47 |
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How to generate constraints of active sites from a pdb file of an enzyme by Albert » Sun, 2013-05-26 20:07 |
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3,292 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Change the number of residues on pdb file! by phanvy » Tue, 2014-04-15 23:26 |
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9,428 |
by rmoretti Mon, 2015-02-09 09:09 |
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Binding energy calculation by SunH » Thu, 2010-12-09 19:29 |
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5,318 |
by jadolfbr Mon, 2014-04-21 06:47 |
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create a centroid file from structure or NOE list by logandonaldson » Wed, 2013-03-20 12:23 |
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4,679 |
by smlewis Mon, 2014-04-21 06:47 |
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Fastrelax energy by Lindsay » Thu, 2014-01-16 21:04 |
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4,527 |
by rmoretti Mon, 2014-04-21 06:48 |
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Rosetta Design Stalling by Jhreed » Sun, 2016-03-06 14:38 |
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2,904 |
by rmoretti Mon, 2016-03-07 14:20 |
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Silent Files by ctaylor » Tue, 2009-12-22 09:22 |
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3,046 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: f.check_fold_tree by sudhar » Mon, 2010-08-23 08:59 |
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3,261 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta can't handle symmetric fold and dock for >10-subunit protein? by myang » Mon, 2011-09-26 11:52 |
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3,331 |
by IAndre Mon, 2014-04-21 06:47 |
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Rosetta documentation by Ashafix » Sat, 2013-08-31 06:50 |
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4,601 |
by Ashafix Mon, 2014-04-21 06:48 |
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Rosetta remodel on intel Xeon Phi by pablogalazdavison » Wed, 2016-09-14 15:35 |
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2,943 |
by pablogalazdavison Thu, 2016-09-15 16:36 |
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Your compiler does not have full support for C++ll regex, and therefore can't suport RegEx_based_CDR_Detector/antitody grafting. by ldx022 » Thu, 2023-03-09 17:03 |
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323 |
by ldx022 Sat, 2023-03-11 16:53 |
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AnchoredPDBcreator by spraha » Wed, 2012-03-14 23:34 |
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3,102 |
by smlewis Mon, 2014-04-21 06:47 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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1,663 |
by ylwang Tue, 2020-03-24 19:35 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
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4,182 |
by dgront Mon, 2014-04-21 06:47 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
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2,505 |
by jadolfbr Wed, 2019-06-12 20:17 |
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Explanations to membrane_abinitio options by justin » Wed, 2010-02-10 01:14 |
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2,923 |
by justin Mon, 2014-04-21 06:47 |
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Hbond tripped by alejandro » Mon, 2011-11-21 04:17 |
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3,400 |
by alejandro Mon, 2014-04-21 06:47 |
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RosettaDock-4.0 score term by Zjq1998 » Wed, 2022-06-29 22:07 |
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879 |
by ssrb Tue, 2022-07-05 11:07 |
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Error Scoring Application- Illegal attempt to score by samuelrpita » Thu, 2015-08-06 14:45 |
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4,231 |
by rmoretti Wed, 2015-08-12 15:03 |
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# decoys of silent by fred » Wed, 2014-04-02 06:00 |
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3,053 |
by fred Fri, 2014-04-04 11:34 |
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How to set start coordinates for ligand when doing protein_ligand docking by Huanhuan » Wed, 2021-08-18 21:09 |
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1,241 |
by matteoferla Fri, 2021-08-20 08:37 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
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3,954 |
by einew Mon, 2014-04-21 06:47 |
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Question about run FLEXPEPDOCK with 3 chain by phanvy » Wed, 2014-07-02 08:46 |
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3,134 |
by phanvy Wed, 2014-07-02 23:32 |
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score_jd2.macosclangrelease No such file or directory by ahmadkhalifa » Mon, 2017-11-27 09:26 |
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3,249 |
by everyday847 Tue, 2017-11-28 13:07 |
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Is it CS-HM Rosetta restraint derivation i.e cm_scripts in Rosetta 3.3 bundles? by nh_prt » Tue, 2013-03-26 12:22 |
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3,178 |
by smlewis Mon, 2014-04-21 06:47 |
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Abinitio isolated by ac.research » Wed, 2018-04-04 07:36 |
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2,177 |
by smlewis Wed, 2018-04-04 10:42 |
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should rosetta3.1 do prepacking before docking? by lqzhang » Thu, 2010-01-07 12:15 |
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3,024 |
by smlewis Mon, 2014-04-21 06:47 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,149 |
by smlewis Mon, 2014-04-21 06:47 |
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Figuring out the input flags required for this script by jjung380 » Wed, 2023-04-19 14:17 |
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217 |
by rmoretti Mon, 2023-05-15 15:23 |
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relax NOT CONVERGED by albumns » Thu, 2010-06-24 21:25 |
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2,965 |
by smlewis Mon, 2014-04-21 06:47 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,148 |
by rmoretti Tue, 2023-05-09 15:32 |
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undefined symbol: ZN9CifString12UnknownValueE error meaning? by aniyaz » Wed, 2023-01-04 08:37 |
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343 |
by aniyaz Wed, 2023-01-11 01:24 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
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4,041 |
by smlewis Mon, 2014-04-21 06:47 |
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Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
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2,308 |
by smlewis Wed, 2018-04-18 19:03 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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6,378 |
by rmoretti Mon, 2014-04-21 06:47 |
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relax - P6G molecule by allan.ferrari » Wed, 2016-11-30 05:01 |
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2,663 |
by allan.ferrari Tue, 2017-01-03 05:02 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
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1,394 |
by rmoretti Wed, 2021-03-17 13:52 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
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3,417 |
by harshkhare Mon, 2014-04-21 06:47 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
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2,218 |
by rmoretti Fri, 2018-08-03 08:42 |
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Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi by SamuelGong » Fri, 2023-01-27 06:20 |
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272 |
by rmoretti Mon, 2023-01-30 08:04 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
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3,996 |
by smlewis Mon, 2014-04-21 06:47 |
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prepare PDB with constrained relax by jarod » Sun, 2013-05-05 07:10 |
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4,792 |
by rmoretti Mon, 2014-04-21 06:47 |
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CDR Cluster Constrained Relax Equivalent by SenyorDrew » Wed, 2016-04-27 08:04 |
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3,024 |
by SenyorDrew Tue, 2016-06-14 06:43 |
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Questions about Monte Carlo Simulated Annealing algorithm in the design protocols by mdyini » Thu, 2012-05-31 12:39 |
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5,233 |
by smlewis Mon, 2014-04-21 06:47 |
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fix backbone design of interface residue by Lindsay » Tue, 2013-12-17 19:23 |
3 |
4,000 |
by rmoretti Mon, 2014-04-21 06:48 |
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change DOF of NH3 group in N terminus by SergeyP » Wed, 2016-02-03 02:22 |
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3,310 |
by SergeyP Thu, 2016-02-04 00:07 |
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Loop modeling FLAGS by jklett » Fri, 2009-12-04 02:45 |
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3,120 |
by jklett Mon, 2014-04-21 06:47 |
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Cannot Open Resfile by csvajda » Fri, 2022-03-04 13:39 |
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963 |
by csvajda Mon, 2022-03-07 07:46 |
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Criteria on the calculation of Irmsd of the protein-protein interface by yzq » Tue, 2012-02-21 07:06 |
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3,886 |
by smlewis Mon, 2014-04-21 06:47 |
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how to output a structure when scoring it? by tianbu » Tue, 2012-07-31 09:38 |
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3,810 |
by rmoretti Mon, 2014-04-21 06:47 |
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Side-chain packing with multiple chains by pachecoj » Mon, 2014-04-21 16:53 |
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4,002 |
by jadolfbr Mon, 2014-04-21 21:05 |
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Weird results from flexpepdock MPI by gerdos » Fri, 2016-06-24 01:18 |
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2,704 |
by smlewis Thu, 2016-06-30 08:44 |
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Loop Modeling by ctaylor » Fri, 2009-12-18 11:42 |
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3,033 |
by ctaylor Mon, 2014-04-21 06:47 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
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3,240 |
by einew Mon, 2014-04-21 06:47 |
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Abinitio starts at the 27th amino acid by JadAbbass » Thu, 2013-08-29 05:38 |
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3,288 |
by JadAbbass Mon, 2014-04-21 06:48 |
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Constraints and final scoring of satisfied constraints in ab initio by Azadeh » Tue, 2014-07-15 01:29 |
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5,983 |
by rmoretti Thu, 2014-07-17 09:21 |
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error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1 by wyb » Fri, 2017-12-01 17:50 |
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3,119 |
by rmoretti Sat, 2017-12-16 12:19 |
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Problem with protein and ligand preparation before ligand docking. by zg148119@ohio.edu » Fri, 2021-02-05 06:47 |
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1,904 |
by rmoretti Tue, 2021-02-09 09:22 |
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How can move peptide on cleft of enzyme on Flexpepdock? by phanvy » Thu, 2014-06-05 02:22 |
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4,047 |
by zaldini Fri, 2015-01-02 05:38 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
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4,277 |
by lzx32 Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
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4,884 |
by nilkoeg Mon, 2014-04-21 06:47 |
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Random seed confusion by pardave » Mon, 2012-11-12 09:45 |
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4,244 |
by pardave Mon, 2014-04-21 06:47 |
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RosettaCM rename or swap the order of sequences in your alignment file by ahmadkhalifa » Fri, 2017-12-22 08:42 |
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3,167 |
by rmoretti Mon, 2018-01-15 15:24 |
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C-term amidation by tttt » Tue, 2021-03-02 07:46 |
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2,147 |
by tatsiana.bylund Mon, 2022-01-24 07:58 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
6,978 |
by rmoretti Tue, 2019-07-09 10:29 |
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Unrecognised resiudues when rescoring PDB files generated by enzyme_design under MPI by linucks » Tue, 2018-02-13 03:41 |
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3,552 |
by linucks Fri, 2018-02-23 08:08 |
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manually changing fixbb residue ref energies by jtmacd » Wed, 2009-11-25 08:43 |
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3,568 |
by jtmacd Mon, 2014-04-21 06:47 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
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2,390 |
by maruhuang Thu, 2019-09-26 18:55 |
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Enzyme Design by bharat_46010 » Tue, 2014-11-25 23:55 |
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5,393 |
by bharat_46010 Mon, 2014-12-15 20:51 |
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The vall.jul19.2011.gz Database by ac.research » Fri, 2017-09-01 02:29 |
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3,937 |
by ac.research Mon, 2017-09-04 16:43 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
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4,158 |
by lanselibai Tue, 2014-12-16 10:48 |
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rosetta 3.1-how to run parallel tasks? by wtscrystal » Fri, 2009-11-06 03:23 |
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5,283 |
by lqzhang Mon, 2014-04-21 06:47 |
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membrane protein packing prediction by djpittdj » Fri, 2012-01-13 08:55 |
4 |
3,784 |
by pardave Mon, 2014-04-21 06:47 |
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How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches by zaldini » Fri, 2015-01-02 05:53 |
4 |
4,061 |
by zaldini Wed, 2015-01-07 20:35 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
10,713 |
by smlewis Mon, 2014-04-21 06:47 |
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How to turn off output of POSE_ENERGIES_TABLE by lah435 » Tue, 2015-02-03 21:21 |
4 |
3,942 |
by jwillis Sat, 2015-02-07 20:40 |
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Comparative modeling Error: potential mismatch between sequence from alignment and sequence from PDB! by nzsuzsanna » Wed, 2016-04-27 05:32 |
4 |
4,214 |
by nzsuzsanna Fri, 2016-04-29 04:30 |
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Antibody Homology Modeling - Antibody vs. Antibody_legacy by cannond » Tue, 2017-02-14 05:53 |
4 |
3,607 |
by cannond Wed, 2017-03-01 08:05 |
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Identical decoys by aroop » Tue, 2012-09-25 12:50 |
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4,213 |
by smlewis Mon, 2014-04-21 06:47 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
4 |
2,404 |
by matteoferla Mon, 2019-12-23 07:24 |
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How to add uncommon metal elements into Rosetta and make it recognizable? by JasonIsaac » Thu, 2023-02-09 00:08 |
4 |
277 |
by JasonIsaac Sat, 2023-02-11 00:44 |
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Repeated entries in silent file by almeida85 » Fri, 2022-08-05 02:52 |
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665 |
by almeida85 Thu, 2022-08-11 00:29 |
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Successful installation on OpenSuse11.1 - tests? by zharmad » Thu, 2010-08-19 00:30 |
4 |
3,426 |
by zharmad Mon, 2014-04-21 06:47 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
4 |
2,707 |
by eminegenetics Fri, 2018-09-21 07:42 |
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Updated publications/details on Rosetta score function? by nitroamos » Tue, 2009-10-20 19:48 |
4 |
4,380 |
by rmoretti Mon, 2015-03-30 14:43 |
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short peptide fragment file generation by cheyuk » Mon, 2016-07-11 00:04 |
4 |
4,089 |
by smlewis Wed, 2016-07-13 23:41 |
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cluster error by albumns » Thu, 2010-12-16 18:06 |
4 |
4,204 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
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3,952 |
by justin Mon, 2014-04-21 06:47 |
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first try at relaxing a structure by einew » Wed, 2011-01-05 11:09 |
4 |
6,094 |
by einew Mon, 2014-04-21 06:47 |
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Error while running MakeRotLib by saxen » Sun, 2016-04-17 22:51 |
4 |
4,056 |
by saxen Mon, 2016-04-25 10:38 |
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Error : seqpos <= size() by phanvy » Sun, 2014-10-05 17:20 |
4 |
5,081 |
by phanvy Wed, 2014-10-08 01:42 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
4 |
2,917 |
by rmoretti Fri, 2018-08-03 11:39 |
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