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Rosetta 3 - General
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Refinement of a PDB structure containing multiple models by ahmadkhalifa » Wed, 2018-04-18 07:44 |
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2,824 |
by smlewis Wed, 2018-04-18 19:03 |
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Error running GenericMonteCarlo mover within MultipleOutputWrapper mover by abhi_pe_acharya » Mon, 2018-04-16 04:58 |
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2,252 |
by abhi_pe_acharya Thu, 2018-04-19 03:49 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,399 |
by jferrie Mon, 2018-04-23 15:25 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
5 |
5,821 |
by linucks Wed, 2018-04-25 08:50 |
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The concept of unsatisfied hydrogen bond by asbelx » Wed, 2018-04-25 01:32 |
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3,243 |
by asbelx Thu, 2018-04-26 00:23 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
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3,816 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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Issue with Loop Analyzer Mover ouput by abhi_pe_acharya » Mon, 2018-04-30 09:55 |
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2,077 |
by abhi_pe_acharya Mon, 2018-04-30 22:54 |
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Structure refinement guided by Cryo-EM density maps by ahmadkhalifa » Thu, 2018-03-08 08:22 |
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6,795 |
by ahmadkhalifa Tue, 2018-05-01 09:04 |
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Question about CartesianMD by orionshih » Sun, 2018-04-29 21:07 |
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2,125 |
by orionshih Tue, 2018-05-01 21:16 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
0 |
1,031 |
by pmit Thu, 2018-05-03 01:48 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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1,037 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Mutate multidomain protein by frankfurter1 » Wed, 2018-05-09 04:40 |
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1,128 |
by frankfurter1 Wed, 2018-05-09 04:40 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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1,139 |
by ac.research Mon, 2018-05-14 08:27 |
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Problems with "pdb_renumber.py" in tutorial Advanced Protein-Protein Docking by Sunyp_IM » Sun, 2017-06-25 02:40 |
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8,958 |
by ac.research Mon, 2018-05-14 10:20 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
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1,265 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Fragments for short peptides using Robetta by renedominik » Wed, 2018-05-16 14:21 |
3 |
2,935 |
by renedominik Mon, 2018-06-04 00:04 |
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Cannot use SimpleMetrics by Vedasheersh » Sun, 2018-06-10 23:38 |
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3,967 |
by smlewis Tue, 2018-06-12 10:54 |
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ERROR: Unused "free" argument specified: GDP.fa.tors by ahmadkhalifa » Fri, 2018-06-15 11:27 |
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8,288 |
by smlewis Tue, 2018-06-19 09:28 |
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Amino acid post-translational modifications by aelatico » Tue, 2018-06-19 03:29 |
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1,977 |
by smlewis Tue, 2018-06-19 10:31 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
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1,603 |
by smlewis Thu, 2018-06-28 13:34 |
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Rosetta CM round_thread.pdb doesn't exist and can't find pose (id = round) by ahmadkhalifa » Wed, 2018-05-23 09:51 |
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3,513 |
by rmoretti Thu, 2018-06-28 14:09 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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1,616 |
by rmoretti Thu, 2018-06-28 14:22 |
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Total Rama Score by jcminerlanl » Thu, 2018-05-10 07:19 |
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2,132 |
by rmoretti Thu, 2018-06-28 14:28 |
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Free FSC score for validating refinement by ahmadkhalifa » Thu, 2018-05-10 05:53 |
2 |
2,466 |
by ahmadkhalifa Fri, 2018-06-29 07:54 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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4,581 |
by smlewis Tue, 2018-07-03 11:22 |
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which make_fragments.pl by renedominik » Mon, 2018-06-04 08:58 |
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3,360 |
by renedominik Sat, 2018-07-07 03:03 |
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Why I_sc of Rosetta 2016.02 and 2018.21 are so different? by eminegenetics » Mon, 2018-07-16 12:51 |
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2,408 |
by eminegenetics Wed, 2018-07-18 13:48 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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2,215 |
by jkleman Tue, 2018-07-31 13:19 |
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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
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1,725 |
by rmoretti Wed, 2018-08-01 16:04 |
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Propagating the same mutation over "different" chains by mdeklotz » Thu, 2018-07-26 09:27 |
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2,710 |
by rmoretti Fri, 2018-08-03 08:42 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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2,015 |
by rmoretti Fri, 2018-08-03 08:59 |
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rosettaScore.py has a typo, I think. Can I fix it in my own copy? by mdeklotz » Thu, 2018-08-02 15:15 |
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3,503 |
by rmoretti Fri, 2018-08-03 11:39 |
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Undocumented changes in BackrubDD by abhi_pe_acharya » Mon, 2018-07-16 00:24 |
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2,092 |
by abhi_pe_acharya Sun, 2018-08-05 22:03 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
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1,644 |
by smlewis Tue, 2018-08-07 16:59 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
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3,476 |
by ela Thu, 2018-08-09 08:04 |
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Atomic refinement with fixed ligand by ahmadkhalifa » Tue, 2018-07-24 10:41 |
6 |
4,802 |
by rmoretti Mon, 2018-08-20 11:45 |
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recommended function type for cross links data by meravb » Sun, 2018-08-05 06:57 |
2 |
2,071 |
by rmoretti Mon, 2018-08-20 11:51 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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2,298 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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Rosetta CM incorrect threading by ahmadkhalifa » Mon, 2018-08-06 11:09 |
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5,213 |
by rmoretti Fri, 2018-08-24 11:59 |
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Reading chloride anions by Martin Floor » Mon, 2018-08-27 14:29 |
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2,447 |
by Martin Floor Tue, 2018-08-28 13:21 |
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RosettaCM density guided rebuilding methodology by ahmadkhalifa » Thu, 2018-08-30 06:45 |
4 |
3,304 |
by ahmadkhalifa Thu, 2018-08-30 23:09 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
0 |
1,222 |
by ela Fri, 2018-08-31 02:53 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
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5,063 |
by salvatta Mon, 2018-09-10 10:04 |
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known disulfides in Remodel sequence by matteoferla » Mon, 2018-09-10 06:43 |
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1,824 |
by matteoferla Thu, 2018-09-13 06:21 |
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Fluctuations in I_sc by eminegenetics » Thu, 2018-09-13 12:07 |
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3,241 |
by eminegenetics Fri, 2018-09-21 07:42 |
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Is CST_Design required for enzdes protocol? by dasdevashishdas » Mon, 2018-09-03 00:51 |
2 |
2,362 |
by dasdevashishdas Thu, 2018-09-27 03:35 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
0 |
1,050 |
by Anpu Thu, 2018-09-27 23:36 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
0 |
1,461 |
by a.book Wed, 2018-10-03 15:56 |
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Peripheral membrane protein modeling by Fukiishi » Tue, 2018-10-02 02:09 |
3 |
2,949 |
by matteoferla Thu, 2018-10-04 01:30 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
1 |
1,558 |
by rmoretti Mon, 2018-10-08 11:20 |
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env energy term by bazzoli » Wed, 2018-10-10 01:59 |
0 |
1,120 |
by bazzoli Wed, 2018-10-10 01:59 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
0 |
1,079 |
by yangshen12 Fri, 2018-10-26 12:34 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
1 |
1,672 |
by jadolfbr Fri, 2018-11-09 09:17 |
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Rosetta-based projects using and licensing by SergeyP » Fri, 2018-10-26 15:45 |
3 |
3,211 |
by SergeyP Mon, 2018-11-12 09:19 |
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Rosetta CM - Ignore Sporadic Errors by Swillard » Wed, 2018-06-13 05:47 |
6 |
4,663 |
by rmoretti Mon, 2018-11-12 14:29 |
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How to minimize only a few key residues' orientation by Ronghai Cheng » Mon, 2018-11-05 18:37 |
2 |
2,504 |
by Ronghai Cheng Tue, 2018-11-13 21:56 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
3 |
2,891 |
by ylwang Wed, 2018-11-14 03:03 |
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Is it better to have smaller nstruct but many runs? by Loki01 » Mon, 2018-11-19 11:50 |
3 |
2,602 |
by smlewis Mon, 2018-11-19 13:20 |
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Rosetta lack of necessary application by ylwang » Wed, 2018-11-07 01:13 |
3 |
2,844 |
by rmoretti Wed, 2018-11-21 13:50 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
1 |
1,668 |
by rmoretti Wed, 2018-11-21 14:01 |
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Iterative local rebuilding vs automated structure refinement by ahmadkhalifa » Fri, 2018-09-14 07:44 |
4 |
3,580 |
by rmoretti Wed, 2018-11-21 14:11 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
1 |
1,709 |
by rmoretti Wed, 2018-11-21 14:14 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
1 |
1,580 |
by AJVincelli Sun, 2018-11-25 11:09 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
0 |
936 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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protein ligand docking by patrickchirdon » Sun, 2018-12-30 15:07 |
4 |
3,412 |
by smlewis Mon, 2018-12-31 08:58 |
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Errors in Interface_design_demo by zhoubin » Fri, 2019-01-04 13:14 |
0 |
1,178 |
by zhoubin Fri, 2019-01-04 13:14 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
2,033 |
by David Tue, 2019-01-22 12:23 |
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Error when using RabD with a nanobody. by zhangying1990 » Mon, 2018-12-17 04:40 |
5 |
4,132 |
by jadolfbr Mon, 2019-01-28 08:46 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
0 |
1,617 |
by rlwoltz Fri, 2019-02-01 10:31 |
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protein design question by bo » Fri, 2012-08-24 10:41 |
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34,333 |
by jyy Wed, 2019-02-20 00:30 |
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alignblast.pl truncated file by rlwoltz » Mon, 2019-03-11 18:32 |
0 |
1,181 |
by rlwoltz Mon, 2019-03-11 18:32 |
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Misleading error message by renedominik » Tue, 2019-03-12 01:19 |
1 |
2,039 |
by vmulligan Tue, 2019-03-26 11:30 |
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Add hemes to cytochrome structures by BuddySphinx » Sun, 2018-12-16 13:46 |
2 |
2,113 |
by rmoretti Fri, 2019-03-29 14:43 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
1,487 |
by rmoretti Sat, 2019-03-30 12:10 |
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Clarify ProteinInterfaceDesign “randomness” by tsztain » Wed, 2019-02-27 09:41 |
3 |
2,415 |
by rmoretti Sat, 2019-03-30 12:12 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
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3,300 |
by rmoretti Wed, 2019-04-03 09:31 |
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perturb_temp flag by Loki01 » Tue, 2018-11-27 05:06 |
2 |
2,029 |
by rmoretti Wed, 2019-04-03 09:58 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
1 |
1,518 |
by rmoretti Wed, 2019-04-03 10:03 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
1 |
1,581 |
by vmulligan Mon, 2019-04-08 14:49 |
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MSDMover error in RECON protocol by yifeili1983 » Mon, 2019-04-01 00:44 |
2 |
2,005 |
by yifeili1983 Mon, 2019-04-15 22:34 |
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protocols.jd2.JobDistributor: [ ERROR ] by johnnytam100 » Thu, 2019-04-11 09:30 |
5 |
4,797 |
by jadolfbr Tue, 2019-04-16 09:15 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
1 |
1,503 |
by connyyu Thu, 2019-04-18 03:26 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
1,515 |
by jeliazkov Fri, 2019-05-03 07:00 |
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How to use the <CavityVolume> filter in the released version of Rosetta by BioPython » Sun, 2019-05-12 20:07 |
0 |
1,091 |
by BioPython Sun, 2019-05-12 20:07 |
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Memory leak when PDB preparation by Jacky010 » Mon, 2019-05-06 01:28 |
6 |
4,336 |
by Jacky010 Tue, 2019-05-14 01:24 |
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How to specify residue numbers in a resfile for a batch of pdbs, while some of them have missing residue numbers? by johnnytam100 » Wed, 2019-05-08 02:30 |
2 |
2,776 |
by johnnytam100 Wed, 2019-05-15 18:45 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
1,432 |
by smlewis Wed, 2019-05-29 13:21 |
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InterfaceAnalyzer packstat score = 0.000 by vmc99 » Fri, 2018-11-16 11:30 |
11 |
8,651 |
by SenyorDrew Wed, 2019-06-12 14:10 |
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InterfaceAnalyzer total score = 0.000 by vmc99 » Wed, 2019-06-12 14:06 |
3 |
3,210 |
by jadolfbr Wed, 2019-06-12 20:17 |
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Hydrogen bond detection and shape complementarity by sujigeorge1979 » Fri, 2019-06-14 02:39 |
3 |
2,470 |
by sujigeorge1979 Thu, 2019-06-27 01:30 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
1 |
1,494 |
by smlewis Fri, 2019-06-28 13:56 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
1 |
1,584 |
by rmoretti Mon, 2019-07-08 08:05 |
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Rosetta3 Tutorials by smlewis » Fri, 2011-11-18 07:33 |
8 |
17,419 |
by rmoretti Tue, 2019-07-09 10:24 |
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ERROR: Unable to open weights/patch file by peony » Sun, 2013-11-17 02:49 |
4 |
7,865 |
by rmoretti Tue, 2019-07-09 10:29 |
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How to define a theozyme from the .pdb crystal structure without ligand? by weifulei » Mon, 2019-05-20 21:18 |
1 |
1,887 |
by rmoretti Tue, 2019-07-09 12:31 |
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how to design binding interface? by Lindsay » Mon, 2013-12-02 19:06 |
8 |
10,628 |
by rmoretti Tue, 2019-07-09 12:50 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
1,682 |
by rmoretti Tue, 2019-07-09 15:48 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
1 |
1,739 |
by rmoretti Tue, 2019-07-09 15:57 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
1,442 |
by rmoretti Tue, 2019-07-09 15:59 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:17 |
0 |
988 |
by yinasun Fri, 2019-07-26 02:17 |
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