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Rosetta 3 - General

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Normal topic Errors in Interface design  
by Kazu » Thu, 2019-10-31 17:48
4
2,429 by Kazu
Mon, 2020-05-18 10:52
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
447 by rmoretti
Tue, 2022-08-09 06:52
Normal topic ERROR: Unused "free" argument specified: GDP.fa.tors
by ahmadkhalifa » Fri, 2018-06-15 11:27
10
6,715 by smlewis
Tue, 2018-06-19 09:28
Normal topic ERROR: unrecognized atomtype property VIRTUAL
by harshkhare » Mon, 2011-11-14 09:40
3
3,407 by harshkhare
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights/patch file
by peony » Sun, 2013-11-17 02:49
4
6,937 by rmoretti
Tue, 2019-07-09 10:29
Normal topic ERROR: Unable to open weights/patch file
by almeida85 » Tue, 2022-08-09 05:33
2
431 by almeida85
Thu, 2022-08-11 00:32
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,935 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,884 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error: Start tag expected, '<' not found
by Isomerase » Wed, 2022-04-06 19:45
1
924 by rmoretti
Thu, 2022-04-07 07:51
Normal topic Error: Some problem with atom_id_mask in defining atom_id_map
by galvaner » Tue, 2016-03-01 13:23
1
1,531 by rmoretti
Thu, 2016-04-28 15:57
Normal topic ERROR: PDB reader is ignoring atom
by phanvy » Wed, 2014-04-16 17:59
2
3,232 by phanvy
Mon, 2014-04-21 03:58
Hot topic ERROR: Option matching -s not found in command line top-level context
by xxx » Wed, 2011-04-20 05:38
15
17,839 by rmoretti
Mon, 2014-04-21 06:47
Normal topic ERROR: Not complementary at positions
by szcshr123 » Fri, 2021-02-26 05:58
2
1,341 by szcshr123
Fri, 2021-02-26 14:41
Normal topic ERROR: Illegal value for real option -docking:dock_pert specified: 8
by libai2098 » Tue, 2011-03-15 02:26
1
1,950 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: FragmentIO: could not open file
by ahmadkhalifa » Wed, 2018-01-31 13:30
1
1,994 by rmoretti
Wed, 2018-01-31 14:57
Normal topic ERROR: filtered_alignments.size() > 0
by jhbrown » Tue, 2012-01-17 13:28
2
2,228 by jhbrown
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
3,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Error reading in FragmentPicker::read_spine_x(): does not match size of query!
by Anonymous » Sat, 2012-09-08 09:33
1
2,791 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
748 by nferruz
Fri, 2020-08-28 06:05
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
5,853 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: beta_nov16(.wts) requested, but -corrections::beta_nov16 not set to true. This leads to a garbage scorefunction.
by sia » Mon, 2023-05-08 06:36
6
125 by rmoretti
Tue, 2023-05-16 07:10
Normal topic ERROR: Assertion Fdensity.u2 and Fdensity.u3 failed
by ahmadkhalifa » Wed, 2017-12-06 07:38
13
7,363 by brandon.frenz
Thu, 2018-03-08 09:28
Normal topic error--rosetta fragment‐based refinement protocol for refinement against EM density
by gsuchunli » Thu, 2016-06-30 11:06
2
3,584 by rmoretti
Tue, 2016-07-12 08:18
Normal topic Error with simple_cycpep_predict protocol while using a native pdb file
by Florent Langenfeld » Tue, 2019-03-26 10:05
3
2,012 by Florent Langenfeld
Tue, 2020-09-22 03:03
Normal topic Error with sequence_tolerance.R processing the checkpoint files, *.ga.entities and *.ga.generations.
by He Xiao » Mon, 2022-11-07 03:41
0
233 by He Xiao
Mon, 2022-11-07 04:10
Normal topic Error with residue selectors not counting indices correctly.
by Wexter300 » Tue, 2023-04-04 11:04
1
100 by ajasja
Wed, 2023-04-05 00:20
Normal topic Error with options -dunbrack_prob_buried_semi and -dunbrack_prob_nonburied_semi
by SamuelGong » Fri, 2023-01-27 06:20
3
248 by rmoretti
Mon, 2023-01-30 08:04
Normal topic Error with non-canonical amino acid in SnugDock.
by sk0319 » Thu, 2016-12-29 16:12
8
6,329 by sk0319
Wed, 2017-01-11 10:52
Normal topic Error with filter in rosseta_scripts
by Osmany Guirola » Mon, 2020-05-11 04:52
0
727 by Osmany Guirola
Mon, 2020-05-11 04:52
Normal topic Error while trying to run r_noe_assign
by sn » Mon, 2017-03-13 11:40
1
1,422 by rmoretti
Tue, 2017-03-28 09:02
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
4,037 by saxen
Mon, 2016-04-25 10:38
Normal topic error when using script best_ifaceE.py
by windmill » Thu, 2020-06-18 21:30
1
980 by windmill
Thu, 2020-06-18 21:32
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
479 by lsong2
Thu, 2021-11-18 10:31
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,617 by amelie
Tue, 2014-09-30 14:29
Normal topic Error when using RabD with a nanobody.
by zhangying1990 » Mon, 2018-12-17 04:40
5
3,344 by jadolfbr
Mon, 2019-01-28 08:46
Normal topic Error when trying to use xml script to design PDB
by Wexter300 » Fri, 2023-02-24 13:29
1
192 by rmoretti
Fri, 2023-02-24 13:58
Normal topic Error when running prepack of PLEXPEPDOCKING
by phanvy » Wed, 2014-06-18 07:11
11
10,153 by G Mustafa
Fri, 2021-09-10 08:20
Normal topic Error when running FRAGMENT generation
by phanvy » Sat, 2014-09-20 17:53
12
12,100 by rmoretti
Mon, 2014-10-06 16:50
Normal topic Error when running enzyme_design tutorial
by linucks » Fri, 2017-06-30 12:26
4
3,214 by linucks
Mon, 2017-07-03 09:50
Normal topic Error when running "plot_LHOC.py"
by Sunyp_IM » Sun, 2017-08-13 05:54
5
3,631 by smlewis
Wed, 2017-08-16 08:30
Normal topic error when running beta_strand_homodimer_design
by szypanther » Sun, 2014-05-25 20:22
2
3,209 by szypanther
Mon, 2014-05-26 22:03
Normal topic ERROR when run prepacking pdbfile in Rosetta 3.4
by phanvy » Thu, 2014-04-17 00:04
14
13,144 by phanvy
Wed, 2014-06-18 07:50
Normal topic Error when renumbering PDB
by dzhao » Wed, 2012-07-18 01:03
7
8,504 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error when clustering the output from a docking study
by jos » Thu, 2011-09-08 03:26
2
3,115 by jos
Mon, 2014-04-21 06:47
Normal topic Error when attempting to relax pdb, "flag_input_relax" not found
by Wexter300 » Mon, 2023-01-23 11:32
4
215 by Wexter300
Wed, 2023-01-25 12:34
Normal topic Error using pHDock
by SenyorDrew » Thu, 2016-08-11 05:56
0
1,435 by SenyorDrew
Thu, 2016-08-11 05:56
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
3,853 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
1,132 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Error using ddg_monomer application (Assertion `pose.residue(resnum).name1() == wt` failed)
by sgaray » Thu, 2021-06-24 14:47
2
1,579 by sgaray
Fri, 2021-06-25 11:26
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
4,202 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Error score_scatter_plot.py
by jrcf » Wed, 2015-12-30 05:46
2
3,036 by jrcf
Fri, 2016-02-12 16:41
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
3,998 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic Error running RosettaAntibodyDesign application
by SenyorDrew » Mon, 2017-10-30 08:13
1
1,745 by jadolfbr
Wed, 2017-11-01 10:11
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
2,679 by lvtun
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.0
by aschoenr » Wed, 2009-06-10 13:57
1
2,453 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Error running GenericMonteCarlo mover within MultipleOutputWrapper mover
by abhi_pe_acharya » Mon, 2018-04-16 04:58
1
1,914 by abhi_pe_acharya
Thu, 2018-04-19 03:49
Normal topic Error running design in 3.4
by inder » Thu, 2012-07-05 19:27
2
3,222 by inder
Mon, 2014-04-21 06:47
Normal topic Error running Abinitio relax with @flags
by samuelrpita » Mon, 2015-10-05 13:20
7
7,019 by rmoretti
Tue, 2015-10-27 09:11
Normal topic error running "helix_preassemble_setup.py"
by zahra_AZ » Tue, 2020-11-03 01:54
1
1,141 by rmoretti
Tue, 2021-02-09 12:19
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
7,872 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
3,949 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
0
812 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic Error message: ArchiveManager spinning down
by Lati » Sun, 2016-01-24 02:42
1
2,134 by smlewis
Sun, 2016-01-24 03:24
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,708 by joseph
Mon, 2014-04-21 06:47
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
1,143 by renedominik
Wed, 2020-02-12 06:16
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
2,103 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in rosetta_scripts.mpi.linuxgccrelease: double free or corruption (!prev): 0x0000000007697a90
by almeida85 » Thu, 2022-11-17 01:04
0
227 by almeida85
Thu, 2022-11-17 01:04
Normal topic Error in RMSD calculation when native sequence deviates
by abdullah » Tue, 2009-11-10 08:56
1
2,383 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,331 by matteoferla
Sat, 2020-05-23 03:09
Normal topic error in mol2 to params conversion for GAliganddocking
by jalan » Wed, 2020-04-22 06:08
2
1,512 by jalan
Thu, 2020-04-23 05:19
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
1,296 by sayan500
Tue, 2019-07-30 22:20
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,481 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,096 by rmoretti
Mon, 2019-11-04 12:54
Normal topic Error in H3_modeling_scores.fasc file from antibody_H3 program
by Brian Wiley » Sat, 2023-02-04 23:41
0
114 by Brian Wiley
Sat, 2023-02-04 23:43
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
0
1,185 by wentlewi
Sat, 2020-05-16 08:06
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,389 by jyy
Mon, 2020-01-13 17:19
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,336 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1
by wyb » Fri, 2017-12-01 17:50
3
3,100 by rmoretti
Sat, 2017-12-16 12:19
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,600 by rmoretti
Thu, 2016-04-28 14:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
8,333 by smlewis
Mon, 2014-04-21 06:47
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
10,674 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
5,054 by phanvy
Wed, 2014-10-08 01:42
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
2,097 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
3,569 by abiadak
Mon, 2014-04-21 06:47
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
1,045 by rmoretti
Tue, 2021-02-09 11:30
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
0
591 by cryosky
Sun, 2021-09-26 13:24
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
0
545 by rohi
Fri, 2021-06-25 10:29
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
5,360 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
3,868 by bo
Mon, 2014-04-21 06:47
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
0
925 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,611 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
2,154 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
328 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
517 by mb0261
Mon, 2022-09-26 07:50
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
2,403 by gipsonb
Mon, 2014-04-21 06:47
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,445 by smlewis
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
9,597 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,675 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Energy Calculation in Rosetta3.4
by sdg_lab » Thu, 2012-04-12 04:49
6
10,402 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01
4
6,720 by Filipe
Mon, 2014-04-21 06:47
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