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Rosetta 3 - General

Topic / Topic starter Replies Viewssort descending Last post
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
3,539 by rmoretti
Mon, 2014-04-21 06:48
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
3,540 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
3,549 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
3,555 by mgrom92
Wed, 2016-03-23 16:45
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
3,572 by IAndre
Mon, 2014-04-21 06:47
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
3,573 by cheyuk
Sun, 2015-09-20 02:08
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
3,583 by albumns
Mon, 2014-04-21 06:47
Normal topic Produces a set of rotamers from a given residue
by a-eatemadi@razi... » Tue, 2017-08-15 08:05
5
3,615 by a-eatemadi@razi...
Fri, 2017-09-15 07:45
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
3,617 by rmoretti
Tue, 2015-01-06 09:58
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
3,618 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
3,623 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,634 by smlewis
Mon, 2014-04-21 06:47
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
3,643 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
3,647 by smlewis
Mon, 2014-04-21 06:47
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
3,657 by smlewis
Mon, 2014-04-21 06:47
Normal topic restrain multiple portions of proteins with MinMover
by Karol » Wed, 2016-09-07 08:29
4
3,658 by rmoretti
Thu, 2016-09-08 10:56
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,659 by Lindsay
Mon, 2014-04-21 06:48
Normal topic ClusterApp hogs way too much memory...
by IgaK » Tue, 2009-09-29 00:14
5
3,659 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,664 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
3,669 by renedominik
Mon, 2014-04-21 06:47
Normal topic an old question
by albumns » Sun, 2012-10-28 12:14
4
3,677 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
3,680 by pardave
Mon, 2014-04-21 06:47
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
3,683 by phanvy
Thu, 2014-10-16 18:54
Normal topic Modeling only part of the protein structure using ROSETTA
by qiongwu » Fri, 2009-05-29 09:08
5
3,689 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
3,689 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
3,697 by albumns
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
3,708 by smlewis
Mon, 2014-04-21 06:47
Normal topic BridgeChainsMover
by msardejani » Sun, 2016-08-07 17:32
5
3,725 by smlewis
Tue, 2016-08-30 13:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
3,738 by smlewis
Mon, 2014-04-21 06:47
Normal topic Question regarding Mlipo score
by DanielK » Tue, 2012-05-29 02:04
4
3,742 by smlewis
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
3,745 by gw
Mon, 2014-04-21 06:47
Normal topic What is the total_score that relax outputs?
by cossio » Tue, 2014-12-02 13:50
4
3,760 by cossio
Thu, 2014-12-04 05:41
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,773 by xujc
Mon, 2014-04-21 06:47
Normal topic "CEN" atom in the pdb file
by wszjzhang » Wed, 2010-03-17 14:35
3
3,778 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Evaluating energies on non-standard rotamer set
by pachecoj » Sat, 2014-07-26 16:27
5
3,779 by pachecoj
Sat, 2014-08-09 06:33
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
3,794 by dgront
Mon, 2014-04-21 06:47
Normal topic Rosetta Antibody Prepack - Problem HL_A vs. LH_A
by cannond » Fri, 2017-03-03 02:41
5
3,807 by cannond
Wed, 2017-03-08 03:00
Normal topic Problem with the -dock_ppk flag
by lzx32 » Sat, 2011-04-30 00:21
4
3,827 by lzx32
Mon, 2014-04-21 06:47
Normal topic P(Res | phi,psi )
by jadolfbr » Thu, 2011-07-21 08:49
5
3,856 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Updated publications/details on Rosetta score function?
by nitroamos » Tue, 2009-10-20 19:48
4
3,856 by rmoretti
Mon, 2015-03-30 14:43
Normal topic rosetta on snow leopard?
by nitroamos » Thu, 2009-10-01 17:07
3
3,860 by nitroamos
Mon, 2014-04-21 06:47
Normal topic Rosetta releases and revision numbers
by ShaneOConnor » Thu, 2011-11-17 13:55
2
3,877 by smlewis
Mon, 2014-04-21 06:47
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
3,897 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic industrial example of ROSETTA modeled protein
by banshee » Sat, 2016-04-23 23:40
5
3,901 by banshee
Tue, 2016-04-26 00:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,911 by knutjbj
Mon, 2014-04-21 06:47
Normal topic How to dock 3 missing domains onto a multi-domain protein
by tevang » Sun, 2011-04-10 15:22
3
3,931 by smlewis
Mon, 2014-04-21 06:47
Normal topic Flexible backbone design using PSSM
by kalicuta » Thu, 2012-07-26 13:38
4
3,932 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
3,943 by linucks
Wed, 2018-04-25 08:50
Normal topic Fastrelax energy
by Lindsay » Thu, 2014-01-16 21:04
3
3,962 by rmoretti
Mon, 2014-04-21 06:48
Normal topic loop modelling error on Rosetta3.2 or Rosetta3.3
by exchhattu » Thu, 2011-09-29 03:58
5
3,976 by rpache
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
3,980 by jtmacd
Mon, 2014-04-21 06:47
Normal topic type of docking
by rohi » Mon, 2020-07-06 06:55
11
4,001 by rohi
Sun, 2020-07-26 17:03
Normal topic Suppress printing to STDOUT for applications
by tylerborrman » Tue, 2015-11-24 11:37
5
4,003 by code_Monkey
Thu, 2021-03-18 08:03
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
4,005 by rmoretti
Tue, 2021-02-09 11:52
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,006 by rmoretti
Sat, 2014-03-22 11:40
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
4,022 by Karol
Thu, 2016-12-15 01:35
Normal topic Rosetta forcefield terms and interpretation
by zigeuner » Sat, 2013-05-25 16:59
2
4,032 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Linker problems when building mini
by assaff » Mon, 2009-10-12 01:07
6
4,033 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitio - is there a way to limit number of CPU cores the program uses?
by burkheadlab » Mon, 2011-05-09 16:37
1
4,034 by smlewis
Mon, 2014-04-21 06:47
Normal topic Resfile for fixed backbone design
by dyq » Wed, 2009-10-07 10:50
5
4,051 by attesor
Mon, 2014-04-21 06:47
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
4,052 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic ignore loops on threading
by fred » Tue, 2014-11-11 11:33
5
4,054 by rmoretti
Tue, 2014-11-18 10:01
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
4,067 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Minimization Issue: Coarse Graining to All atom modeling
by abolia » Tue, 2015-04-28 10:52
5
4,068 by rmoretti
Tue, 2015-05-05 14:31
Normal topic How to set up options in rosetta
by alejandro » Wed, 2011-04-06 02:08
3
4,096 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
4,100 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
4,105 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic How to model a protein that dimerizes to a small molecule?
by pholland » Wed, 2011-05-25 07:29
3
4,111 by pholland
Mon, 2014-04-21 06:47
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,117 by Sandy
Fri, 2015-08-07 15:49
Normal topic Public subversion / Enzyme design public app
by weallen » Tue, 2009-08-11 20:50
6
4,134 by weallen
Mon, 2014-04-21 06:47
Normal topic Give preference to native residue during fixed backbone designing
by tusharranjanmoharana » Mon, 2016-04-04 12:43
6
4,141 by rmoretti
Thu, 2016-04-28 15:19
Normal topic Rosetta documentation
by Ashafix » Sat, 2013-08-31 06:50
3
4,142 by Ashafix
Mon, 2014-04-21 06:48
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
4,178 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
4,190 by glemmon
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
4,192 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic comparison of energy
by sdh » Mon, 2010-08-16 07:55
5
4,197 by smlewis
Mon, 2014-04-21 06:47
Normal topic Maximum Number of Constraints
by jurkm » Fri, 2011-06-17 05:23
3
4,203 by jurkm
Mon, 2014-04-21 06:47
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
4,216 by biofisikx
Mon, 2014-04-21 06:47
Normal topic create a centroid file from structure or NOE list
by logandonaldson » Wed, 2013-03-20 12:23
3
4,217 by smlewis
Mon, 2014-04-21 06:47
Normal topic Citing Rosetta3.0
by ctaylor » Fri, 2009-10-09 11:42
1
4,230 by smlewis
Mon, 2014-04-21 06:47
Normal topic Suppressing Rosetta output, flag for that?
by msellers » Tue, 2011-04-26 11:18
4
4,246 by smlewis
Mon, 2014-04-21 06:47
Normal topic modeling loops between domains
by dhorita » Thu, 2009-03-05 14:48
6
4,249 by jarod
Mon, 2014-04-21 06:47
Normal topic Access sigma values for rotamers
by pachecoj » Thu, 2014-05-15 07:10
5
4,256 by rmoretti
Sat, 2014-05-17 14:10
Normal topic questions about ab init membrane protein
by albumns » Mon, 2011-02-07 01:09
5
4,257 by zeynep
Mon, 2014-04-21 06:47
Normal topic match_dspos1 and other matcher options
by petrikigor » Sat, 2012-10-20 09:22
5
4,263 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Can i start again the job ?
by byin » Thu, 2011-09-15 01:19
6
4,265 by byin
Mon, 2014-04-21 06:47
Normal topic prepare PDB with constrained relax
by jarod » Sun, 2013-05-05 07:10
3
4,287 by rmoretti
Mon, 2014-04-21 06:47
Normal topic membrane modeling error!
by wtscrystal » Wed, 2009-12-09 21:28
3
4,293 by arthuc01
Mon, 2014-04-21 06:47
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
4,297 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
4,327 by aroop
Mon, 2014-04-21 06:47
Normal topic Ligand conformations file in docking
by rosa » Fri, 2013-07-12 09:21
4
4,329 by rosa
Mon, 2014-04-21 06:48
Normal topic rosetta 3.1 recognizes PO4 group in dockinglocalrefine option?
by nilkoeg » Thu, 2011-03-10 23:19
4
4,336 by nilkoeg
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
4,336 by smlewis
Mon, 2014-04-21 06:47
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
4,339 by Anonymous
Mon, 2014-04-21 06:47
Normal topic a question about loop refinement
by albumns » Fri, 2012-03-02 09:38
4
4,388 by albumns
Mon, 2014-04-21 06:47
Normal topic Native gives higher (positive) than lowest energy and clustered decoys
by tiagogomes89 » Thu, 2011-06-02 07:19
6
4,389 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
4,400 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Relax command for docking purposes and cluster_vs_rmsd command
by Rkfoury » Wed, 2015-04-01 08:48
5
4,417 by rmoretti
Sat, 2015-04-25 10:05
Normal topic smoothly kill a mpirun process
by fred » Tue, 2014-02-18 06:06
2
4,424 by Ashafix
Wed, 2014-02-19 06:53
Normal topic Antibody homology modeling fails after blastp
by sunhwan » Sat, 2017-02-18 11:25
7
4,430 by sunhwan
Mon, 2017-02-27 11:02
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