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Rosetta 3 - General

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Normal topic Converting charmm parameter files (.par)
by ajasja » Mon, 2014-09-29 07:19
3
3,561 by jcminerlanl
Tue, 2017-12-19 14:03
Normal topic Rosetta atoms types for enzyme design
by bharat_46010 » Thu, 2011-11-10 06:01
2
3,567 by rmoretti
Mon, 2014-04-21 06:47
Normal topic [Mover] is not known to the MoverFactory
by Jhreed » Fri, 2016-08-05 12:23
4
3,585 by msardejani
Sun, 2016-08-07 17:49
Normal topic combine_silent ERROR: unknown atom_name: CYS SG
by freedman » Mon, 2017-03-06 10:56
5
3,591 by freedman
Mon, 2017-03-06 13:24
Normal topic Problems with Cterm_amidation.txt
by helenah » Thu, 2020-10-08 04:52
8
3,592 by helenah
Tue, 2020-11-03 04:33
Normal topic Protein folding using Monte Carlo derived techniques and implicit solvation
by hefeweizen » Tue, 2013-12-10 06:30
3
3,600 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to make a resfile
by dflaher » Fri, 2017-11-03 10:26
3
3,600 by smlewis
Wed, 2017-11-08 12:08
Normal topic how to keep native structure when do loop modeling
by zlni » Sun, 2009-05-03 10:12
4
3,606 by zlni
Mon, 2014-04-21 06:47
Normal topic Rescoring protein docking decoys to get Irms
by lj269 » Thu, 2014-10-23 13:23
3
3,621 by rmoretti
Wed, 2014-10-29 14:30
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,622 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Patches for post-translational modifications
by ltrabuco » Tue, 2011-02-22 01:00
2
3,632 by ltrabuco
Mon, 2014-04-21 06:47
Normal topic Why I have the different result with the same initial condition?
by mikelin » Sat, 2011-06-04 11:35
2
3,640 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic loop modeling
by MRH » Thu, 2013-08-22 23:19
3
3,643 by MRH
Mon, 2014-04-21 06:48
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
3,654 by smlewis
Wed, 2018-03-21 08:42
Normal topic Multiprocessing and running jobs on server using slurm
by ahmadkhalifa » Mon, 2018-04-09 10:59
1
3,658 by rmoretti
Tue, 2018-04-10 16:00
Normal topic Multiprocessor Execution
by starone » Tue, 2016-04-19 20:06
3
3,659 by smlewis
Thu, 2016-04-21 16:00
Normal topic How to input pdb to rosetta format add "missing" residues to pdb file
by zhisheng » Tue, 2011-06-07 09:51
1
3,659 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem creating pNNMAKE.gnu
by anirbanzz » Sat, 2010-04-17 02:14
3
3,663 by monica0569
Mon, 2014-04-21 06:47
Normal topic Rosetta CM - Ignore Sporadic Errors
by Swillard » Wed, 2018-06-13 05:47
6
3,663 by rmoretti
Mon, 2018-11-12 14:29
Normal topic postive score models from AbinitioRelax
by xpzhang » Fri, 2012-06-22 12:34
4
3,663 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to run docking in rosetta with small molecule
by ajaniharesh » Tue, 2012-02-28 03:58
1
3,667 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to use rosettadesign to do mutations on protein structure
by lqzhang » Thu, 2010-03-04 07:43
3
3,670 by vanita
Mon, 2014-04-21 06:47
Normal topic membrane protein packing prediction
by djpittdj » Fri, 2012-01-13 08:55
4
3,672 by pardave
Mon, 2014-04-21 06:47
Normal topic ligand docking with rosetta_scripts.linuxgccrelease
by xpzhang » Thu, 2015-02-26 10:57
3
3,675 by rmoretti
Mon, 2015-03-30 16:58
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
3,681 by rmoretti
Mon, 2014-04-21 06:48
Normal topic How to set the enviroment variable $ROSETTA3, $ $ROSETTA3_DB, $ROSETTA_TOOLS?
by Sunyp_IM » Thu, 2017-07-27 01:07
1
3,698 by SenyorDrew
Sat, 2017-07-29 09:59
Normal topic pepspec aplication - segmentation fault
by tiagogomes89 » Fri, 2011-09-02 11:18
4
3,699 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
3,700 by japgar
Mon, 2014-04-21 06:47
Normal topic using defined WATERS in PACKING
by ast » Wed, 2012-01-11 09:11
4
3,702 by smlewis
Mon, 2014-04-21 06:47
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
3,703 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Error using InterfaceHoles filter
by SenyorDrew » Fri, 2017-04-14 08:55
4
3,703 by SenyorDrew
Mon, 2017-07-24 11:06
Normal topic Radius of Gyration
by ctaylor » Mon, 2009-09-21 12:45
2
3,712 by ctaylor
Mon, 2014-04-21 06:47
Normal topic how to identify selected interface residues
by vijayaraj81 » Mon, 2014-03-31 01:40
3
3,716 by rmoretti
Tue, 2014-04-01 08:12
Normal topic how to output a structure when scoring it?
by tianbu » Tue, 2012-07-31 09:38
3
3,723 by rmoretti
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
3,725 by cneale
Fri, 2014-03-21 18:13
Normal topic Good baseline settings for side chain packing
by pachecoj » Tue, 2015-01-13 19:25
2
3,729 by rmoretti
Wed, 2015-01-21 10:05
Normal topic PDB HETATM
by hwillis » Thu, 2009-08-06 12:03
2
3,733 by smlewis
Mon, 2014-04-21 06:47
Normal topic Biopython error in mac os x
by vinodh » Tue, 2012-06-12 12:23
3
3,733 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Make_fragments.pl database
by TiagoGomes » Tue, 2009-10-13 11:31
5
3,736 by matteoferla
Wed, 2021-09-29 01:58
Normal topic Unrecognized aa NO3
by JadAbbass » Sun, 2013-07-14 10:48
3
3,753 by JadAbbass
Mon, 2014-04-21 06:48
Normal topic RMS in Score Application
by brspurri » Thu, 2011-12-29 09:19
1
3,754 by smlewis
Mon, 2014-04-21 06:47
Normal topic Noncanonical amino acid HIP
by Victor » Fri, 2014-01-31 07:45
2
3,759 by Victor
Fri, 2014-01-31 10:41
Normal topic Rosetta dock parallel
by mahajanr » Tue, 2010-06-01 16:04
3
3,767 by smlewis
Mon, 2014-04-21 06:47
Normal topic computer shuts down during autobulding with rosetta
by intekhab » Tue, 2011-07-19 01:07
4
3,777 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
3,778 by smlewis
Mon, 2014-04-21 06:47
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,788 by rmoretti
Mon, 2014-04-21 06:48
Normal topic The vall.jul19.2011.gz Database
by ac.research » Fri, 2017-09-01 02:29
4
3,790 by ac.research
Mon, 2017-09-04 16:43
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
3,791 by bo
Mon, 2014-04-21 06:47
Normal topic Criteria on the calculation of Irmsd of the protein-protein interface
by yzq » Tue, 2012-02-21 07:06
3
3,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic core.scoring.rms_util: WARNING: CA_rmsd out of range...
by mdyini » Sat, 2012-02-25 16:14
4
3,802 by mdyini
Mon, 2014-04-21 06:47
Normal topic How to integrate Rosetta code to my program?
by Lsg » Tue, 2011-06-28 07:18
3
3,802 by smlewis
Mon, 2014-04-21 06:47
Normal topic why energy is positive?
by albumns » Tue, 2014-12-23 00:05
3
3,823 by rmoretti
Mon, 2015-02-09 11:21
Normal topic Atomic refinement with fixed ligand
by ahmadkhalifa » Tue, 2018-07-24 10:41
6
3,829 by rmoretti
Mon, 2018-08-20 11:45
Normal topic How to turn off output of POSE_ENERGIES_TABLE
by lah435 » Tue, 2015-02-03 21:21
4
3,830 by jwillis
Sat, 2015-02-07 20:40
Normal topic AbinitioRelax with restraints/constraints
by jtmacd » Mon, 2011-07-11 07:07
2
3,835 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
3,837 by justin
Mon, 2014-04-21 06:47
Normal topic Multi-chain Modelling
by Sandy » Sun, 2015-08-09 14:41
2
3,838 by rmoretti
Tue, 2015-09-08 10:18
Normal topic trying to create heme.params
by einew » Mon, 2011-02-28 13:33
3
3,850 by einew
Mon, 2014-04-21 06:47
Normal topic multiple cst files
by logandonaldson » Wed, 2013-03-20 12:16
4
3,851 by logandonaldson
Mon, 2014-04-21 06:47
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,853 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
3,858 by rmoretti
Mon, 2017-11-06 07:36
Normal topic Relax protocol details for Rosetta 3.1
by Matthys » Sun, 2012-01-15 10:00
4
3,879 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error reading new residue .param file
by mgrom92 » Tue, 2016-03-22 12:54
2
3,881 by mgrom92
Wed, 2016-03-23 16:45
Normal topic fix backbone design of interface residue
by Lindsay » Tue, 2013-12-17 19:23
3
3,893 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error running snugdock
by SenyorDrew » Tue, 2017-03-14 10:00
5
3,895 by SenyorDrew
Wed, 2017-03-29 06:40
Normal topic changing the chain id
by aneamtu » Tue, 2018-01-09 00:08
2
3,898 by aneamtu
Thu, 2018-01-18 00:56
Normal topic unknown constraint function type: AtomPair ?
by jiongzhang » Sun, 2012-07-15 02:13
4
3,898 by jiongzhang
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
3,900 by salvatta
Mon, 2018-09-10 10:04
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
3,906 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,908 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
3,925 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
3,928 by albumns
Mon, 2014-04-21 06:47
Normal topic Computing energy gradients for side chain minimization
by pachecoj » Wed, 2017-03-29 08:03
5
3,928 by pachecoj
Wed, 2017-03-29 12:32
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
3,930 by IAndre
Mon, 2014-04-21 06:47
Normal topic How can move peptide on cleft of enzyme on Flexpepdock?
by phanvy » Thu, 2014-06-05 02:22
4
3,941 by zaldini
Fri, 2015-01-02 05:38
Normal topic Error while running MakeRotLib
by saxen » Sun, 2016-04-17 22:51
4
3,948 by saxen
Mon, 2016-04-25 10:38
Normal topic How to automatically position new peptides into the binding site of a enzime, in order to run peptide-protein docking approaches
by zaldini » Fri, 2015-01-02 05:53
4
3,950 by zaldini
Wed, 2015-01-07 20:35
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,955 by xujc
Mon, 2014-04-21 06:47
Normal topic Typical relax options not applied in relax.mpi.linuxiccrelease??
by David Weis » Mon, 2017-02-27 11:35
5
3,962 by rmoretti
Thu, 2017-08-03 09:01
Normal topic UBQ chemically conjugated docking error
by cheyuk » Fri, 2015-09-18 06:57
4
3,973 by cheyuk
Sun, 2015-09-20 02:08
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
3,975 by smlewis
Wed, 2016-07-13 23:41
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,989 by smlewis
Mon, 2014-04-21 06:47
Normal topic what's the difference between recovery and sequence identity
by Lindsay » Thu, 2012-04-26 05:46
3
4,008 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Sun, 2011-03-06 03:02
3
4,015 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ab initio/relax flag file setup
by w107kdk » Fri, 2009-08-28 11:49
4
4,018 by w107kdk
Mon, 2014-04-21 06:47
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
4,022 by lanselibai
Tue, 2014-12-16 10:48
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
4,032 by Lindsay
Mon, 2014-04-21 06:48
Normal topic solvation
by gw » Wed, 2011-08-31 17:14
4
4,038 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparing scores
by renedominik » Mon, 2012-02-27 05:21
4
4,038 by renedominik
Mon, 2014-04-21 06:47
Normal topic NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken
by Jacob_Verburgt » Tue, 2020-03-10 08:58
6
4,053 by Jacob_Verburgt
Wed, 2020-03-11 05:18
Normal topic Calculating binding affinity
by phanvy » Wed, 2014-10-15 23:35
2
4,074 by phanvy
Thu, 2014-10-16 18:54
Normal topic Give diferent chain information for a single sequence (comparative modeling)
by Martin Floor » Tue, 2013-04-02 08:59
4
4,076 by Martin Floor
Mon, 2014-04-21 06:47
Normal topic Error Scoring Application- Illegal attempt to score
by samuelrpita » Thu, 2015-08-06 14:45
3
4,078 by rmoretti
Wed, 2015-08-12 15:03
Normal topic Questions about rosetta fragment library ranking and fragment conformation sampling algorithm
by mdyini » Thu, 2011-05-19 17:34
3
4,083 by dgront
Mon, 2014-04-21 06:47
Normal topic Rosetta CM incorrect threading
by ahmadkhalifa » Mon, 2018-08-06 11:09
6
4,084 by rmoretti
Fri, 2018-08-24 11:59
Normal topic Fragment files
by exchhattu » Fri, 2009-09-18 01:04
4
4,087 by rmoretti
Tue, 2015-01-06 09:58
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
4,089 by smlewis
Mon, 2014-04-21 06:47
Normal topic Identical decoys
by aroop » Tue, 2012-09-25 12:50
4
4,099 by smlewis
Mon, 2014-04-21 06:47
Normal topic Comparative modeling Error: potential mismatch between sequence from alignment  and sequence from PDB!
by nzsuzsanna » Wed, 2016-04-27 05:32
4
4,101 by nzsuzsanna
Fri, 2016-04-29 04:30
Normal topic Random seed confusion
by pardave » Mon, 2012-11-12 09:45
4
4,126 by pardave
Mon, 2014-04-21 06:47
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