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Rosetta 3 - General

Topic / Topic starter Replies Views Last postsort ascending
Normal topic ab inito memberane error
by albumns » Mon, 2011-02-14 10:58
5
6,847 by albumns
Mon, 2014-04-21 06:47
Normal topic How do I add virtual atom to my cofactor (metal ion) in rosettadock?
by monos_morpheus » Sat, 2011-02-05 21:24
2
2,727 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
1,719 by smlewis
Mon, 2014-04-21 06:47
Normal topic constrain files tutorial
by knutjbj » Fri, 2011-02-18 23:57
2
2,159 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR READING PDB FILE
by asmi » Sat, 2011-02-26 07:23
7
7,276 by smlewis
Mon, 2014-04-21 06:47
Normal topic Performance improvement in AbinitioRelax and relax 3.2 ???
by smg3d » Sun, 2011-02-06 08:59
1
1,845 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possible to ab initio only a part of a protein?
by albumns » Sun, 2011-02-13 08:10
6
3,851 by albumns
Mon, 2014-04-21 06:47
Normal topic make_fragments
by sumukh21 » Wed, 2011-02-23 09:29
3
3,110 by sumukh21
Mon, 2014-04-21 06:47
Normal topic I got the message "bad format in first line of silent file". How do I resolve this?
by monos_morpheus » Thu, 2011-02-03 21:09
1
1,972 by smlewis
Mon, 2014-04-21 06:47
Normal topic I have a .tab file. How do I extract information from it?
by monos_morpheus » Tue, 2011-02-08 09:30
4
4,353 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Symmetric abrelax modeling
by SenyorDrew » Fri, 2011-02-18 10:14
4
3,677 by IAndre
Mon, 2014-04-21 06:47
Normal topic obtaing pdb files
by knutjbj » Fri, 2011-02-25 11:05
3
2,786 by scombs
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
1,857 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
1,804 by smlewis
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,298 by sumukh21
Mon, 2014-04-21 06:47
Normal topic FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369
by knutjbj » Thu, 2011-02-03 03:24
2
3,986 by knutjbj
Mon, 2014-04-21 06:47
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,733 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to relax structure constraining CA in Rosetta3.2?
by albumns » Tue, 2011-02-15 06:15
2
2,104 by smlewis
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,824 by smlewis
Mon, 2014-04-21 06:47
Normal topic I got the message "ERROR: Residue names must be unique!".
by monos_morpheus » Sun, 2011-02-06 03:55
2
3,167 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic why docking results are different?
by albumns » Sat, 2010-12-18 23:53
3
2,831 by smlewis
Mon, 2014-04-21 06:47
Normal topic where do new .params files go?
by einew » Wed, 2011-01-05 12:09
1
1,986 by smlewis
Mon, 2014-04-21 06:47
Normal topic Is the Fold&Dock protocol availabe in Rosetta3.1
by justin » Mon, 2011-01-17 02:41
2
2,021 by smlewis
Mon, 2014-04-21 06:47
Normal topic I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =)
by monos_morpheus » Wed, 2011-02-02 08:11
12
9,112 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
4,563 by smlewis
Mon, 2014-04-21 06:47
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
10,073 by smlewis
Mon, 2014-04-21 06:47
Normal topic Relax protocoll short pdb of AAA petide
by knutjbj » Wed, 2011-01-26 05:01
5
3,908 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster error
by albumns » Thu, 2010-12-16 18:06
4
3,843 by smlewis
Mon, 2014-04-21 06:47
Normal topic first try at relaxing a structure
by einew » Wed, 2011-01-05 11:09
4
5,670 by einew
Mon, 2014-04-21 06:47
Normal topic Generating Fragment Libraries for Metal Binding Proteins
by buzb » Wed, 2011-01-26 12:43
1
2,423 by kaue
Mon, 2014-04-21 06:47
Normal topic about the option -constraints:cst_fa_file & -constraints:cst_fa_weight
by jiongzhang » Sat, 2010-12-25 12:55
1
2,786 by smlewis
Mon, 2014-04-21 06:47
Normal topic why not scoring function in loop model?
by albumns » Thu, 2011-01-06 00:13
1
1,883 by smlewis
Mon, 2014-04-21 06:47
Normal topic is the RosettaNMR protocol available in Rosetta 3.x?
by murgantia » Wed, 2011-01-26 00:39
1
1,799 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in LoopMover_Refine_Backrub.cc ?
by SunH » Wed, 2010-12-15 00:08
1
1,803 by smlewis
Mon, 2014-04-21 06:47
Normal topic All possible mutations
by abdullah_ahmed » Tue, 2011-01-04 02:11
1
1,943 by smlewis
Mon, 2014-04-21 06:47
Normal topic '-norepack_disulf' flag NOT work in Ligand-protein docking ?
by darlintai » Tue, 2011-01-11 22:21
6
4,944 by smlewis
Mon, 2014-04-21 06:47
Hot topic Collecting 3.2 documentation holes
by smlewis » Wed, 2011-01-26 10:39
23
15,762 by FrankVerdin86
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
4,128 by jtmacd
Mon, 2014-04-21 06:47
Normal topic how to cluster loop?
by albumns » Wed, 2011-01-05 19:48
6
5,418 by smlewis
Mon, 2014-04-21 06:47
Normal topic Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure
by bharat_46010 » Sun, 2011-01-23 05:22
4
6,309 by dgront
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,792 by smlewis
Mon, 2014-04-21 06:47
Normal topic Symmetric local protein docking
by efratmas » Tue, 2011-01-11 03:00
3
3,726 by smlewis
Mon, 2014-04-21 06:47
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
11,775 by smlewis
Mon, 2014-04-21 06:47
Normal topic question about protein docking results
by albumns » Thu, 2010-11-25 08:19
1
1,829 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop modeling with ligand in the receptor
by cno » Mon, 2010-12-13 14:07
5
5,442 by smlewis
Mon, 2014-04-21 06:47
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,582 by joseph
Mon, 2014-04-21 06:47
Hot topic high resolution protein docking doesn't work
by albumns » Thu, 2010-12-02 02:36
17
11,504 by albumns
Mon, 2014-04-21 06:47
Normal topic could restta consider the flexibility of backbone duirng protein docking?
by albumns » Wed, 2010-11-24 01:00
1
2,085 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
2,570 by ndousis
Mon, 2014-04-21 06:47
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
1,985 by smlewis
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,055 by smlewis
Mon, 2014-04-21 06:47
Normal topic Binding energy calculation
by SunH » Thu, 2010-12-09 19:29
3
4,788 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic how to do cluster after low resolution protein-protein docking?
by albumns » Sat, 2010-11-27 01:17
4
3,703 by albumns
Mon, 2014-04-21 06:47
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,077 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Rosetta groups in Scandinavia
by knutjbj » Mon, 2010-11-15 23:50
1
1,898 by smlewis
Mon, 2014-04-21 06:47
Normal topic Read svn acces or acces to developmen version of rosetta
by knutjbj » Thu, 2010-12-09 17:06
1
2,027 by smlewis
Mon, 2014-04-21 06:47
Normal topic is it possbile to cluster pdb files?
by albumns » Wed, 2010-10-06 02:38
3
4,466 by smlewis
Mon, 2014-04-21 06:47
Normal topic What is the different between dun08 and default dunbrack library?
by SunH » Mon, 2010-11-08 06:14
1
2,000 by smlewis
Mon, 2014-04-21 06:47
Normal topic AbinitioRelax under different directories without -constant_seed -jran flag
by xpzhang » Wed, 2010-09-15 14:56
6
6,360 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error running rosetta3.1 demos
by lvtun » Thu, 2010-10-21 20:43
2
2,406 by lvtun
Mon, 2014-04-21 06:47
Normal topic ddG from backrub
by jte » Tue, 2010-10-05 14:09
3
2,666 by smlewis
Mon, 2014-04-21 06:47
Normal topic Predict the N-terminal of a protein
by aliaselin » Mon, 2010-11-08 03:23
2
2,068 by smlewis
Mon, 2014-04-21 06:47
Normal topic Installing on windows using MinGW
by abdullah_ahmed » Wed, 2010-09-15 08:45
1
1,621 by smlewis
Mon, 2014-04-21 06:47
Normal topic Introduction or tutorial about RosettaMatch
by kwak » Thu, 2010-10-21 06:37
4
5,298 by kwak
Mon, 2014-04-21 06:47
Normal topic Abinitio Calculations - typical parameters
by vamsi » Thu, 2010-11-11 07:06
5
4,857 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bug in Loop Modeling
by dseelig » Thu, 2010-09-23 05:55
2
2,185 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
3,556 by smlewis
Mon, 2014-04-21 06:47
Normal topic mode=release compile on a mac-pro , seg faults and bus errors
by dnasmith » Thu, 2010-09-09 16:56
2
2,032 by dnasmith
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
2,004 by smlewis
Mon, 2014-04-21 06:47
Normal topic relax with restraints
by jtmacd » Mon, 2010-11-08 09:11
2
2,330 by jtmacd
Mon, 2014-04-21 06:47
Normal topic Can't find the source code of FlexPepDock protocol in Rosetta3.1
by SunH » Thu, 2010-09-16 06:28
2
2,291 by barak
Mon, 2014-04-21 06:47
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,798 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: compiling rosetta3.1 with MPI
by biofisikx » Thu, 2010-08-05 16:00
6
5,408 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with run_lips.pl script
by wdyrka » Tue, 2010-09-07 11:07
1
1,926 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interface rmsd calculation Irms
by mahajanr » Wed, 2010-07-07 18:24
5
6,561 by mahajanr
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,716 by smlewis
Mon, 2014-04-21 06:47
Normal topic abinitiorelax: No funnel
by cno » Tue, 2010-07-27 06:14
6
4,402 by biofisikx
Mon, 2014-04-21 06:47
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
3,763 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,341 by smlewis
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
1,837 by smlewis
Mon, 2014-04-21 06:47
Normal topic Bind a Ligand to RNA
by hdavis9 » Wed, 2010-07-14 09:07
3
2,558 by smlewis
Mon, 2014-04-21 06:47
Hot topic problem compiling rosetta3.1 in windows vista 32 bit using cygwin 1.7.5-1
by Marsia » Thu, 2010-07-22 22:49
18
12,904 by smlewis
Mon, 2014-04-21 06:47
Normal topic Successful installation on OpenSuse11.1 - tests?
by zharmad » Thu, 2010-08-19 00:30
4
3,070 by zharmad
Mon, 2014-04-21 06:47
Normal topic extract 10001+ pdbs
by viochemist » Thu, 2010-07-29 16:25
1
1,542 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to get reliable results for carbohydrate docking?
by albumns » Sun, 2010-09-05 23:12
3
4,202 by smlewis
Mon, 2014-04-21 06:47
Normal topic RNA Parameter File
by hdavis9 » Tue, 2010-07-06 11:36
4
3,142 by smlewis
Mon, 2014-04-21 06:47
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
1,157 by albumns
Mon, 2014-04-21 06:47
Normal topic Failure to find libraries during build
by NCallahan » Mon, 2010-07-26 15:41
3
4,429 by smlewis
Mon, 2014-04-21 06:47
Normal topic weird prolines with hydroxyls from fixbb.linuxgccrelease
by louisclark » Wed, 2010-08-25 15:01
2
2,267 by louisclark
Mon, 2014-04-21 06:47
Normal topic input secondary structure prediction to AbinitioRelax
by biofisikx » Mon, 2010-08-09 12:36
2
2,099 by biofisikx
Mon, 2014-04-21 06:47
Normal topic could I add some constrain to the backbone but not completely fix it when relax?
by albumns » Tue, 2010-06-29 05:43
4
3,053 by smlewis
Mon, 2014-04-21 06:47
Normal topic harmonic_Calphas in RosettaLigand flags.txt
by cpkuntz » Wed, 2010-07-14 08:57
2
2,017 by smlewis
Mon, 2014-04-21 06:47
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,520 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta 3.1 compile error, Linux 32 bit
by viochemist » Thu, 2010-07-29 08:40
11
10,404 by smlewis
Mon, 2014-04-21 06:47
Normal topic Parallel computing in RosettaDock3.1?
by xhluo » Fri, 2010-09-03 02:31
3
2,932 by smlewis
Mon, 2014-04-21 06:47
Normal topic what kind of focefield does Rosetta based on?
by albumns » Tue, 2010-07-06 11:08
1
1,743 by smlewis
Mon, 2014-04-21 06:47
Normal topic PDB output sum
by enoee » Fri, 2010-07-16 12:29
1
1,741 by smlewis
Mon, 2014-04-21 06:47
Normal topic Loop extensions at the end of chains
by japgar » Mon, 2010-07-26 12:35
4
3,448 by japgar
Mon, 2014-04-21 06:47
Normal topic ERROR: f.check_fold_tree
by sudhar » Mon, 2010-08-23 08:59
3
2,952 by smlewis
Mon, 2014-04-21 06:47
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
2,586 by pledor
Mon, 2014-04-21 06:47
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