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Rosetta 3 - General
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Topic / Topic starter | Replies | Views | Last post | |
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Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
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2,805 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to deal with Cu-as a ligand or as part of the receptor? by hanypao » Fri, 2011-09-30 18:50 |
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10,339 |
by rmoretti Mon, 2014-04-21 06:47 |
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null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
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2,156 |
by fred Mon, 2014-04-21 06:47 |
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ERROR: unrecognized atomtype property VIRTUAL by harshkhare » Mon, 2011-11-14 09:40 |
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3,740 |
by harshkhare Mon, 2014-04-21 06:47 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
0 |
1,843 |
by jurkm Mon, 2014-04-21 06:47 |
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Rosetta numbering with missing occupancies by ShaneOConnor » Fri, 2011-10-07 16:18 |
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3,578 |
by ShaneOConnor Mon, 2014-04-21 06:47 |
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AbinitioRelax using multiple cores on a single machine without mpi? by JoG » Tue, 2011-10-25 00:40 |
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11,732 |
by smlewis Mon, 2014-04-21 06:47 |
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Error when clustering the output from a docking study by jos » Thu, 2011-09-08 03:26 |
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3,406 |
by jos Mon, 2014-04-21 06:47 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,779 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Constraining a docking study by jos » Tue, 2011-10-18 05:26 |
2 |
2,644 |
by rmoretti Mon, 2014-04-21 06:47 |
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Rosetta atoms types for enzyme design by bharat_46010 » Thu, 2011-11-10 06:01 |
2 |
3,944 |
by rmoretti Mon, 2014-04-21 06:47 |
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Can i start again the job ? by byin » Thu, 2011-09-15 01:19 |
6 |
5,413 |
by byin Mon, 2014-04-21 06:47 |
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-fake_native Error - not found in command line of rosetta 3.2.1 by vsjasion » Wed, 2011-10-05 12:01 |
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3,317 |
by vsjasion Mon, 2014-04-21 06:47 |
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"unrecognized aa ACT" by einew » Sat, 2011-08-27 14:58 |
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2,521 |
by smlewis Mon, 2014-04-21 06:47 |
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question about scoring silent output files and their contents by burkheadlab » Wed, 2011-07-27 16:28 |
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3,305 |
by rmoretti Mon, 2014-04-21 06:47 |
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angle constraints by gw » Tue, 2011-07-19 07:49 |
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2,512 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3 Tutorials Beta Release by smlewis » Fri, 2011-08-19 13:35 |
7 |
7,660 |
by smlewis Mon, 2014-04-21 06:47 |
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P(Res | phi,psi ) by jadolfbr » Thu, 2011-07-21 08:49 |
5 |
4,892 |
by jadolfbr Mon, 2014-04-21 06:47 |
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solvation by gw » Wed, 2011-08-31 17:14 |
4 |
4,602 |
by smlewis Mon, 2014-04-21 06:47 |
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computer shuts down during autobulding with rosetta by intekhab » Tue, 2011-07-19 01:07 |
4 |
4,307 |
by rmoretti Mon, 2014-04-21 06:47 |
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Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
1 |
3,508 |
by rmoretti Mon, 2014-04-21 06:47 |
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pepspec aplication - segmentation fault by tiagogomes89 » Fri, 2011-09-02 11:18 |
4 |
4,209 |
by smlewis Mon, 2014-04-21 06:47 |
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Can Fold-and-dock protocol applied to membrane proteins by justin » Thu, 2011-07-21 00:14 |
9 |
9,261 |
by wangyr Mon, 2014-04-21 06:47 |
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Modeling of a Multi-Domain Dimer by jurkm » Mon, 2011-08-29 01:39 |
10 |
11,029 |
by jurkm Mon, 2014-04-21 06:47 |
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AbinitioRelax with restraints/constraints by jtmacd » Mon, 2011-07-11 07:07 |
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4,222 |
by jtmacd Mon, 2014-04-21 06:47 |
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Using Relax to asses conformational space by glapidoth11 » Sat, 2011-07-30 05:09 |
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2,906 |
by smlewis Mon, 2014-04-21 06:47 |
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Fe3p Heme Iron Unrecognized Despite Loading Hem Params by vsjasion » Fri, 2011-09-02 10:37 |
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7,575 |
by tigerous Mon, 2014-04-21 06:47 |
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keep crystal structure hydrogens by gw » Wed, 2011-07-20 03:54 |
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3,246 |
by gw Mon, 2014-04-21 06:47 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
3 |
3,917 |
by smlewis Mon, 2014-04-21 06:47 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
3 |
4,273 |
by smlewis Mon, 2014-04-21 06:47 |
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
2 |
3,992 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
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5,018 |
by jurkm Mon, 2014-04-21 06:47 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
1 |
2,327 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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11,203 |
by jurkm Mon, 2014-04-21 06:47 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
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3,538 |
by smlewis Mon, 2014-04-21 06:47 |
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
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5,523 |
by rmoretti Mon, 2014-04-21 06:47 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
1 |
3,479 |
by rmoretti Mon, 2014-04-21 06:47 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
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8,512 |
by moehle Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
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2,410 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
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3,095 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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7,079 |
by smlewis Mon, 2014-04-21 06:47 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
3 |
5,354 |
by pholland Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
1 |
3,922 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
0 |
2,073 |
by burkheadlab Mon, 2014-04-21 06:47 |
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errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
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7,761 |
by jurkm Mon, 2014-04-21 06:47 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,533 |
by londonir Mon, 2014-04-21 06:47 |
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How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
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2,286 |
by libai2098 Mon, 2014-04-21 06:47 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
3 |
5,737 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
1 |
2,362 |
by smlewis Mon, 2014-04-21 06:47 |
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Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
10 |
9,297 |
by rfieldhouse Mon, 2014-04-21 06:47 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
4 |
5,143 |
by smlewis Mon, 2014-04-21 06:47 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
1 |
3,231 |
by smlewis Mon, 2014-04-21 06:47 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
3 |
4,523 |
by dgront Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
1 |
2,399 |
by IAndre Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
2 |
5,127 |
by pepfolder Mon, 2014-04-21 06:47 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
4 |
4,666 |
by lzx32 Mon, 2014-04-21 06:47 |
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Modeling phosphate ion binding site in protein. by bharat_46010 » Tue, 2011-05-17 19:08 |
19 |
20,022 |
by rmoretti Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,702 |
by abdullah Mon, 2014-04-21 06:47 |
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abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
1 |
4,683 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
1 |
2,923 |
by IAndre Mon, 2014-04-21 06:47 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
7 |
7,712 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Is it possible to do alanine scanning in Rosetta 3.2.1.? by monos_morpheus » Tue, 2011-04-12 02:36 |
21 |
21,637 |
by smlewis Mon, 2014-04-21 06:47 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
6 |
6,145 |
by robren Mon, 2014-04-21 06:47 |
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ERROR: Option matching -s not found in command line top-level context by xxx » Wed, 2011-04-20 05:38 |
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19,444 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
3 |
5,033 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
4 |
5,396 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
14 |
14,352 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
11 |
9,488 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Modeling circular permutation and domain insertion by bharat_46010 » Sun, 2011-04-10 19:54 |
13 |
11,389 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
1 |
3,094 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
15 |
13,297 |
by saxen Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
3 |
4,730 |
by smlewis Mon, 2014-04-21 06:47 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
3 |
3,659 |
by alejandro Mon, 2014-04-21 06:47 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
5 |
5,895 |
by einew Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
2 |
3,030 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
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3,330 |
by smlewis Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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9,002 |
by smlewis Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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3,614 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
3 |
5,589 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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3,172 |
by rmoretti Mon, 2014-04-21 06:47 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
5 |
6,570 |
by einew Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
1 |
2,241 |
by smlewis Mon, 2014-04-21 06:47 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
2 |
3,115 |
by einew Mon, 2014-04-21 06:47 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
3 |
4,402 |
by einew Mon, 2014-04-21 06:47 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
3 |
3,543 |
by smlewis Mon, 2014-04-21 06:47 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
3 |
6,855 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
3 |
3,639 |
by einew Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
4 |
5,404 |
by nilkoeg Mon, 2014-04-21 06:47 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
1 |
2,645 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
1 |
2,110 |
by smlewis Mon, 2014-04-21 06:47 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
1 |
1,994 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
1 |
2,203 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
6 |
13,703 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
3 |
4,489 |
by smlewis Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,734 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
7 |
8,756 |
by smlewis Mon, 2014-04-21 06:47 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
2,260 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
6 |
4,946 |
by albumns Mon, 2014-04-21 06:47 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
3,802 |
by sumukh21 Mon, 2014-04-21 06:47 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
1 |
2,377 |
by smlewis Mon, 2014-04-21 06:47 |
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