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Rosetta 3 - General
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Native gives higher (positive) than lowest energy and clustered decoys by tiagogomes89 » Thu, 2011-06-02 07:19 |
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4,974 |
by rmoretti Mon, 2014-04-21 06:47 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,187 |
by rmoretti Mon, 2014-04-21 06:47 |
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Using D-amino acids in Rosetta docking by moehle » Wed, 2011-06-01 00:49 |
7 |
7,834 |
by moehle Mon, 2014-04-21 06:47 |
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Is it possible to use two broker files by kalabharath » Wed, 2011-06-08 01:01 |
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2,188 |
by smlewis Mon, 2014-04-21 06:47 |
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Multiple jobs for homology modeling by justin » Fri, 2011-06-24 08:03 |
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2,871 |
by smlewis Mon, 2014-04-21 06:47 |
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How to define specific residues in alascan ? by Park » Mon, 2011-06-13 19:56 |
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6,463 |
by smlewis Mon, 2014-04-21 06:47 |
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How to model a protein that dimerizes to a small molecule? by pholland » Wed, 2011-05-25 07:29 |
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4,745 |
by pholland Mon, 2014-04-21 06:47 |
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How to input pdb to rosetta format add "missing" residues to pdb file by zhisheng » Tue, 2011-06-07 09:51 |
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3,701 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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1,925 |
by burkheadlab Mon, 2014-04-21 06:47 |
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loop modeling by isengupta13 » Wed, 2011-06-01 15:00 |
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3,542 |
by smlewis Mon, 2014-04-21 06:47 |
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How to integrate Rosetta code to my program? by Lsg » Tue, 2011-06-28 07:18 |
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3,877 |
by smlewis Mon, 2014-04-21 06:47 |
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Why I have the different result with the same initial condition? by mikelin » Sat, 2011-06-04 11:35 |
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3,707 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Maximum Number of Constraints by jurkm » Fri, 2011-06-17 05:23 |
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4,605 |
by jurkm Mon, 2014-04-21 06:47 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
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2,104 |
by smlewis Mon, 2014-04-21 06:47 |
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Using Degenerate Protons in Rosetta3.x by jurkm » Wed, 2011-06-08 03:25 |
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10,091 |
by jurkm Mon, 2014-04-21 06:47 |
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Suppressing Rosetta output, flag for that? by msellers » Tue, 2011-04-26 11:18 |
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4,702 |
by smlewis Mon, 2014-04-21 06:47 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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3,007 |
by smlewis Mon, 2014-04-21 06:47 |
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Questions about rosetta fragment library ranking and fragment conformation sampling algorithm by mdyini » Thu, 2011-05-19 17:34 |
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4,165 |
by dgront Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,171 |
by IAndre Mon, 2014-04-21 06:47 |
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Generate structural fragments by kingljy » Tue, 2011-05-10 20:18 |
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4,814 |
by pepfolder Mon, 2014-04-21 06:47 |
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Problem with the -dock_ppk flag by lzx32 » Sat, 2011-04-30 00:21 |
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4,248 |
by lzx32 Mon, 2014-04-21 06:47 |
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Modeling phosphate ion binding site in protein. by bharat_46010 » Tue, 2011-05-17 19:08 |
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18,299 |
by rmoretti Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,538 |
by abdullah Mon, 2014-04-21 06:47 |
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abinitio - is there a way to limit number of CPU cores the program uses? by burkheadlab » Mon, 2011-05-09 16:37 |
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4,390 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric docking - tetramer of trimers by SenyorDrew » Fri, 2011-04-29 08:26 |
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2,688 |
by IAndre Mon, 2014-04-21 06:47 |
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errors while running rosetta 3.1 by isengupta13 » Tue, 2011-05-17 18:11 |
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7,090 |
by jurkm Mon, 2014-04-21 06:47 |
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Will Rosetta Flexpepdock be adequate for this for now.? by monos_morpheus » Wed, 2011-04-27 19:10 |
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2,323 |
by londonir Mon, 2014-04-21 06:47 |
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How to use Rosetta Position constraint docking? by libai2098 » Mon, 2011-05-09 01:08 |
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2,068 |
by libai2098 Mon, 2014-04-21 06:47 |
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Problem with HETATM entries in PDB file by asmi » Fri, 2011-05-20 10:17 |
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5,218 |
by smlewis Mon, 2014-04-21 06:47 |
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how to add constrains in flexible peptide docking by kingbo2008 » Fri, 2011-04-29 07:55 |
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2,150 |
by smlewis Mon, 2014-04-21 06:47 |
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Remote access to Rosetta on Blue Gene or another HPC system? by rfieldhouse » Mon, 2011-05-16 08:40 |
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8,409 |
by rfieldhouse Mon, 2014-04-21 06:47 |
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How to relax only one domain of a protein and keep the rest of them fixed by tevang » Sun, 2011-04-10 03:16 |
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12,896 |
by smlewis Mon, 2014-04-21 06:47 |
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Is it possible to do Abinitio folding from a linear structure.? by monos_morpheus » Sat, 2011-04-16 09:13 |
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8,513 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Modeling circular permutation and domain insertion by bharat_46010 » Sun, 2011-04-10 19:54 |
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10,241 |
by bharat_46010 Mon, 2014-04-21 06:47 |
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How to set the cyana format of distance restraint in rosetta? by zhisheng » Mon, 2011-04-25 02:21 |
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2,885 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
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11,962 |
by saxen Mon, 2014-04-21 06:47 |
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How to dock 3 missing domains onto a multi-domain protein by tevang » Sun, 2011-04-10 15:22 |
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4,324 |
by smlewis Mon, 2014-04-21 06:47 |
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Troubles using RigidBodyTransMover and RigidBodyPerturbMover by alejandro » Thu, 2011-04-21 06:11 |
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3,286 |
by alejandro Mon, 2014-04-21 06:47 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
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6,943 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Is it possible to do alanine scanning in Rosetta 3.2.1.? by monos_morpheus » Tue, 2011-04-12 02:36 |
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19,583 |
by smlewis Mon, 2014-04-21 06:47 |
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No score.sc generated after running flexpepdock. by monos_morpheus » Sun, 2011-04-10 04:06 |
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5,530 |
by robren Mon, 2014-04-21 06:47 |
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ERROR: Option matching -s not found in command line top-level context by xxx » Wed, 2011-04-20 05:38 |
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17,847 |
by rmoretti Mon, 2014-04-21 06:47 |
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How to set up options in rosetta by alejandro » Wed, 2011-04-06 02:08 |
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4,579 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
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4,920 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Using 2 non-standard residues in one run by einew » Tue, 2011-03-08 21:24 |
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5,888 |
by einew Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,025 |
by smlewis Mon, 2014-04-21 06:47 |
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help with perturbation docking please by einew » Fri, 2011-03-25 16:16 |
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2,820 |
by einew Mon, 2014-04-21 06:47 |
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trying to create heme.params by einew » Mon, 2011-02-28 13:33 |
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3,937 |
by einew Mon, 2014-04-21 06:47 |
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interpreting score values in silent output file after running abinitiorelax by burkheadlab » Wed, 2011-03-09 15:42 |
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3,120 |
by smlewis Mon, 2014-04-21 06:47 |
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I am a beginner in rosetta software and need help to build params file by nais » Fri, 2011-03-18 13:37 |
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6,348 |
by rmoretti Mon, 2014-04-21 06:47 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
3 |
3,222 |
by einew Mon, 2014-04-21 06:47 |
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rosetta 3.1 recognizes PO4 group in dockinglocalrefine option? by nilkoeg » Thu, 2011-03-10 23:19 |
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4,852 |
by nilkoeg Mon, 2014-04-21 06:47 |
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abintio clustering - funnel plot by vamsi » Fri, 2011-03-25 09:18 |
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2,403 |
by smlewis Mon, 2014-04-21 06:47 |
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Loop Insertion/Extension using rosetta suite by bharat_46010 » Mon, 2011-02-28 04:45 |
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1,852 |
by smlewis Mon, 2014-04-21 06:47 |
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Where is the flag -preserve_input_cb? by mdyini » Wed, 2011-03-09 14:40 |
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1,751 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Illegal value for real option -docking:dock_pert specified: 8 by libai2098 » Tue, 2011-03-15 02:26 |
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1,951 |
by smlewis Mon, 2014-04-21 06:47 |
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How do I add hydrogen atoms to my PDB file? by monos_morpheus » Wed, 2011-03-30 03:30 |
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12,753 |
by rmoretti Mon, 2014-04-21 06:47 |
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cluster error by albumns » Sun, 2011-03-06 03:02 |
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4,082 |
by smlewis Mon, 2014-04-21 06:47 |
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low resolution blind protein-protein docking with a ligand by einew » Sun, 2011-03-20 13:59 |
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5,404 |
by einew Mon, 2014-04-21 06:47 |
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Having trouble producing a .pdb file from a silent output file after running abinitio relax by burkheadlab » Wed, 2011-03-09 12:48 |
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2,650 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Re: Basic python scripts for File Manipulation by bharat_46010 » Mon, 2011-03-14 19:44 |
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3,064 |
by smlewis Mon, 2014-04-21 06:47 |
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Help with get_pdb.py for PDB file cleaning by lzx32 » Mon, 2011-03-28 02:11 |
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8,317 |
by smlewis Mon, 2014-04-21 06:47 |
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first run of abinitio in rosetta 3.2 produces an error right away by burkheadlab » Fri, 2011-03-04 22:50 |
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3,241 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta3.2 cluster application file-reading error by mdyini » Wed, 2011-03-09 16:59 |
3 |
5,158 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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2,958 |
by rmoretti Mon, 2014-04-21 06:47 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
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2,033 |
by smlewis Mon, 2014-04-21 06:47 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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1,961 |
by smlewis Mon, 2014-04-21 06:47 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,405 |
by sumukh21 Mon, 2014-04-21 06:47 |
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FlexPepDocking.mpi.linuxgccrelease bails out ERROR: total_residue() != 0 ERROR:: Exit from: src/core/pose/Pose.cc line: 1369 by knutjbj » Thu, 2011-02-03 03:24 |
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4,195 |
by knutjbj Mon, 2014-04-21 06:47 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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1,908 |
by smlewis Mon, 2014-04-21 06:47 |
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how to relax structure constraining CA in Rosetta3.2? by albumns » Tue, 2011-02-15 06:15 |
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2,321 |
by smlewis Mon, 2014-04-21 06:47 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
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2,007 |
by smlewis Mon, 2014-04-21 06:47 |
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I got the message "ERROR: Residue names must be unique!". by monos_morpheus » Sun, 2011-02-06 03:55 |
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3,365 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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mpi / jd2 with AbinitioRelax and relax (3.2) by smg3d » Wed, 2011-02-09 10:39 |
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22,102 |
by Gaurav_kumar Mon, 2014-04-21 06:47 |
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Patches for post-translational modifications by ltrabuco » Tue, 2011-02-22 01:00 |
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3,696 |
by ltrabuco Mon, 2014-04-21 06:47 |
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questions about ab init membrane protein by albumns » Mon, 2011-02-07 01:09 |
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4,803 |
by zeynep Mon, 2014-04-21 06:47 |
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ab inito memberane error by albumns » Mon, 2011-02-14 10:58 |
5 |
7,341 |
by albumns Mon, 2014-04-21 06:47 |
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How do I add virtual atom to my cofactor (metal ion) in rosettadock? by monos_morpheus » Sat, 2011-02-05 21:24 |
2 |
2,992 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
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1,888 |
by smlewis Mon, 2014-04-21 06:47 |
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constrain files tutorial by knutjbj » Fri, 2011-02-18 23:57 |
2 |
2,390 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR READING PDB FILE by asmi » Sat, 2011-02-26 07:23 |
7 |
7,875 |
by smlewis Mon, 2014-04-21 06:47 |
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Performance improvement in AbinitioRelax and relax 3.2 ??? by smg3d » Sun, 2011-02-06 08:59 |
1 |
2,005 |
by smlewis Mon, 2014-04-21 06:47 |
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is it possible to ab initio only a part of a protein? by albumns » Sun, 2011-02-13 08:10 |
6 |
4,280 |
by albumns Mon, 2014-04-21 06:47 |
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make_fragments by sumukh21 » Wed, 2011-02-23 09:29 |
3 |
3,389 |
by sumukh21 Mon, 2014-04-21 06:47 |
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I got the message "bad format in first line of silent file". How do I resolve this? by monos_morpheus » Thu, 2011-02-03 21:09 |
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2,144 |
by smlewis Mon, 2014-04-21 06:47 |
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I have a .tab file. How do I extract information from it? by monos_morpheus » Tue, 2011-02-08 09:30 |
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4,752 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Symmetric abrelax modeling by SenyorDrew » Fri, 2011-02-18 10:14 |
4 |
4,007 |
by IAndre Mon, 2014-04-21 06:47 |
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obtaing pdb files by knutjbj » Fri, 2011-02-25 11:05 |
3 |
3,042 |
by scombs Mon, 2014-04-21 06:47 |
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RosettaMatch in 3.2 by jtmacd » Mon, 2010-12-20 08:04 |
4 |
4,527 |
by jtmacd Mon, 2014-04-21 06:47 |
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how to cluster loop? by albumns » Wed, 2011-01-05 19:48 |
6 |
5,809 |
by smlewis Mon, 2014-04-21 06:47 |
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Using rosetta 3 to make a fragment library and then use it to model loop of a protein structure by bharat_46010 » Sun, 2011-01-23 05:22 |
4 |
6,769 |
by dgront Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
1 |
1,936 |
by smlewis Mon, 2014-04-21 06:47 |
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Symmetric local protein docking by efratmas » Tue, 2011-01-11 03:00 |
3 |
3,982 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
12 |
12,711 |
by smlewis Mon, 2014-04-21 06:47 |
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why docking results are different? by albumns » Sat, 2010-12-18 23:53 |
3 |
3,105 |
by smlewis Mon, 2014-04-21 06:47 |
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where do new .params files go? by einew » Wed, 2011-01-05 12:09 |
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2,153 |
by smlewis Mon, 2014-04-21 06:47 |
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Is the Fold&Dock protocol availabe in Rosetta3.1 by justin » Mon, 2011-01-17 02:41 |
2 |
2,214 |
by smlewis Mon, 2014-04-21 06:47 |
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I'm a total beginner to Rosetta 3.2 and there are no tutorials for me to follow. Can someone help.? =) by monos_morpheus » Wed, 2011-02-02 08:11 |
12 |
9,925 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
3 |
4,866 |
by smlewis Mon, 2014-04-21 06:47 |
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error about 'std::bad_alloc' during running by zhisheng » Mon, 2011-01-10 09:45 |
4 |
10,677 |
by smlewis Mon, 2014-04-21 06:47 |
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