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Rosetta 3 - General
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Topic / Topic starter | Replies | Views | Last post | |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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1,245 |
by taylorjones Mon, 2021-04-05 13:17 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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2,340 |
by rmoretti Tue, 2014-07-01 12:21 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
1 |
1,657 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
1 |
2,185 |
by jkleman Tue, 2018-07-31 13:19 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
1 |
1,422 |
by dgront Thu, 2021-02-11 08:30 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
1 |
2,559 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
1 |
2,326 |
by smlewis Mon, 2014-04-21 06:47 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
1 |
2,681 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
1 |
4,760 |
by rmoretti Sat, 2014-03-22 11:40 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
1 |
2,197 |
by rmoretti Wed, 2015-02-18 09:17 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
1 |
1,184 |
by ahuls1 Thu, 2021-07-29 13:23 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
1 |
5,498 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
1 |
2,888 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,553 |
by rmoretti Mon, 2017-08-21 09:55 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
1 |
1,317 |
by amelie.stein Mon, 2020-09-28 10:41 |
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Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
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2,614 |
by smlewis Mon, 2014-04-21 06:47 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,493 |
by smlewis Mon, 2014-04-21 06:47 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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2,100 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,879 |
by jadolfbr Fri, 2016-02-05 15:32 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
1 |
829 |
by matteoferla Wed, 2022-07-20 10:33 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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6,195 |
by rmoretti Tue, 2014-07-01 12:45 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,597 |
by ac.research Sat, 2017-11-18 06:54 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
1 |
1,520 |
by jkleman Thu, 2020-01-16 11:05 |
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mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
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2,290 |
by smlewis Mon, 2014-04-21 06:47 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
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2,284 |
by smlewis Mon, 2014-04-21 06:47 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
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3,536 |
by smlewis Mon, 2014-04-21 06:47 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
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1,977 |
by smlewis Mon, 2014-04-21 06:48 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,196 |
by rmoretti Mon, 2014-05-12 07:50 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
1 |
2,245 |
by rmoretti Mon, 2015-05-25 11:07 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
1 |
1,874 |
by rmoretti Wed, 2016-06-29 10:20 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,756 |
by jadolfbr Thu, 2019-08-29 14:29 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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2,074 |
by smlewis Mon, 2014-04-21 06:47 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,720 |
by smlewis Mon, 2014-04-21 06:47 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
1,646 |
by matteoferla Tue, 2020-06-23 10:58 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
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970 |
by rmoretti Tue, 2022-08-09 06:52 |
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
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2,348 |
by smlewis Mon, 2014-04-21 06:47 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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2,000 |
by rmoretti Tue, 2015-10-27 08:46 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,410 |
by renedominik Wed, 2020-02-12 06:16 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
1 |
1,314 |
by aloshbau Tue, 2021-03-09 02:47 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
1 |
2,194 |
by smlewis Mon, 2014-04-21 06:47 |
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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
1 |
2,193 |
by smlewis Mon, 2014-04-21 06:47 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
1 |
2,239 |
by rmoretti Tue, 2014-06-10 11:34 |
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Installing rosetta 3.0 by dalemu » Thu, 2009-09-24 13:28 |
1 |
2,793 |
by smlewis Mon, 2014-04-21 06:47 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
1 |
3,231 |
by smlewis Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
1 |
3,235 |
by smlewis Tue, 2014-12-23 13:58 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
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2,680 |
by rmoretti Fri, 2017-04-14 08:37 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
1 |
2,005 |
by smlewis Mon, 2018-04-16 16:32 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
1,651 |
by rmoretti Tue, 2019-07-09 15:48 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
1 |
731 |
by rmoretti Fri, 2022-08-26 14:51 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
1 |
2,241 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
1 |
2,418 |
by smlewis Mon, 2014-04-21 06:47 |
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Building Rosetta PROBLEM by nunesjulioc » Fri, 2010-02-26 06:03 |
1 |
1,997 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
1 |
4,020 |
by rmoretti Mon, 2014-04-21 06:48 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
1 |
1,773 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
1 |
718 |
by matteoferla Fri, 2022-06-17 10:38 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
1 |
3,503 |
by smlewis Fri, 2016-07-22 07:31 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
1 |
1,978 |
by rmoretti Fri, 2018-08-03 08:59 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
1 |
1,040 |
by rmoretti Tue, 2021-11-30 07:41 |
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ab initio protein structure prediction by croshong » Wed, 2009-12-16 23:25 |
1 |
2,213 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
1 |
2,301 |
by rmoretti Mon, 2014-04-21 06:47 |
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rosetta@home in local PC farm by jarod » Wed, 2010-05-05 18:31 |
1 |
2,192 |
by smlewis Mon, 2014-04-21 06:47 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
1 |
3,004 |
by smlewis Fri, 2014-02-28 05:45 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
1 |
2,179 |
by rmoretti Mon, 2017-05-15 09:03 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
1 |
786 |
by rmoretti Mon, 2022-09-12 06:58 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
1 |
2,659 |
by mpacella Mon, 2014-04-21 06:47 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
1 |
2,416 |
by rmoretti Thu, 2015-04-02 12:52 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
1 |
1,807 |
by rmoretti Tue, 2016-07-12 08:48 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,594 |
by rmoretti Mon, 2019-08-26 15:01 |
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MoveMap file for backrub by jiyongpark.77 » Sat, 2009-07-18 03:53 |
1 |
2,418 |
by smlewis Mon, 2014-04-21 06:47 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
1 |
1,553 |
by rmoretti Thu, 2018-02-22 09:29 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,690 |
by matteoferla Sat, 2020-05-23 03:09 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
1 |
1,180 |
by rmoretti Tue, 2021-04-20 13:06 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
1 |
1,209 |
by rmoretti Tue, 2021-02-09 10:48 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
1 |
939 |
by jadolfbr Sat, 2022-02-12 23:16 |
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RosettaMatch in Rosetta3.2? by SenyorDrew » Fri, 2010-08-13 07:47 |
1 |
2,776 |
by smlewis Mon, 2014-04-21 06:47 |
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Site-wide installations and 64-bit builds by bene » Tue, 2009-10-20 10:16 |
1 |
2,065 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta 3.1 have the 9999 limitation? by wtscrystal » Sat, 2009-11-07 01:18 |
1 |
2,222 |
by smlewis Mon, 2014-04-21 06:47 |
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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
1 |
3,476 |
by rmoretti Mon, 2014-04-21 06:47 |
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Non-ideal residue detected by cnelson » Thu, 2010-07-01 12:20 |
1 |
2,240 |
by smlewis Mon, 2014-04-21 06:47 |
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Modeling by hwillis » Wed, 2009-08-12 11:07 |
1 |
2,143 |
by frichter Mon, 2014-04-21 06:47 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
1 |
2,678 |
by smlewis Mon, 2014-04-21 06:47 |
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Could the Relax step be used separately ? (solved) by wszjzhang » Tue, 2010-03-30 15:00 |
1 |
2,114 |
by smlewis Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
1 |
2,572 |
by rmoretti Mon, 2014-04-21 06:48 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
1 |
2,097 |
by rmoretti Sun, 2016-02-21 06:38 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
1 |
1,990 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
1 |
1,446 |
by rmoretti Sat, 2019-03-30 12:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
1 |
1,363 |
by matteoferla Sat, 2020-06-20 03:56 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
1 |
1,537 |
by matteoferla Thu, 2021-06-03 08:24 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
1 |
1,061 |
by mb0261 Mon, 2022-09-26 07:50 |
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Residue not found in pose by lzx32 » Fri, 2011-09-09 03:42 |
1 |
2,805 |
by rmoretti Mon, 2014-04-21 06:47 |
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Symmetric Docking (Making Trimer from Monomerics Units) by sdg_lab » Thu, 2012-04-12 09:21 |
1 |
2,236 |
by rmoretti Mon, 2014-04-21 06:47 |
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AtomTree::torsion_angle() can't find dof! in match and enzdes by petrikigor » Fri, 2012-10-19 09:49 |
1 |
2,602 |
by rmoretti Mon, 2014-04-21 06:47 |
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Clustering and Protein Preparation for docking by MRH » Sun, 2013-08-25 22:01 |
1 |
3,420 |
by rmoretti Mon, 2014-04-21 06:48 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
1 |
2,287 |
by rmoretti Mon, 2016-09-05 09:39 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
1 |
2,155 |
by smlewis Mon, 2014-04-21 06:47 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
1 |
1,984 |
by rmoretti Fri, 2015-07-03 13:51 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
1 |
2,456 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
1 |
2,399 |
by IAndre Mon, 2014-04-21 06:47 |
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Model Extraction by mdweirna » Tue, 2010-04-13 15:28 |
1 |
2,006 |
by smlewis Mon, 2014-04-21 06:47 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
1 |
2,321 |
by rmoretti Mon, 2014-12-15 02:37 |
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