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Rosetta 3 - General

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Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
1,245 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
2,340 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,657 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
2,185 by jkleman
Tue, 2018-07-31 13:19
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
1,422 by dgront
Thu, 2021-02-11 08:30
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,559 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error in Running Symmetry Docking cutpoint.
by Jacob » Wed, 2011-06-01 08:21
1
2,326 by smlewis
Mon, 2014-04-21 06:47
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,681 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,760 by rmoretti
Sat, 2014-03-22 11:40
Normal topic ligand flexibility
by dave » Thu, 2015-02-12 08:48
1
2,197 by rmoretti
Wed, 2015-02-18 09:17
Normal topic Problem with match on enzdes
by ahuls1 » Thu, 2021-07-29 13:21
1
1,184 by ahuls1
Thu, 2021-07-29 13:23
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
5,498 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,888 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,553 by rmoretti
Mon, 2017-08-21 09:55
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
1,317 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,614 by smlewis
Mon, 2014-04-21 06:47
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,493 by smlewis
Mon, 2014-04-21 06:47
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
2,100 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,879 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni.
by reoverstreet » Mon, 2022-07-11 14:39
1
829 by matteoferla
Wed, 2022-07-20 10:33
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
6,195 by rmoretti
Tue, 2014-07-01 12:45
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
1,597 by ac.research
Sat, 2017-11-18 06:54
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
1,520 by jkleman
Thu, 2020-01-16 11:05
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
2,290 by smlewis
Mon, 2014-04-21 06:47
Normal topic NMR / NOE related tools in 3.2 ?
by smg3d » Sun, 2011-02-06 06:11
1
2,284 by smlewis
Mon, 2014-04-21 06:47
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,536 by smlewis
Mon, 2014-04-21 06:47
Normal topic missing amino acid
by berk » Fri, 2013-06-14 06:07
1
1,977 by smlewis
Mon, 2014-04-21 06:48
Normal topic Computing pairwise energies for rotamers
by pachecoj » Sat, 2014-05-03 17:52
1
2,196 by rmoretti
Mon, 2014-05-12 07:50
Normal topic Output fasta of enzdes generated pdbs
by eyong123 » Tue, 2015-05-19 08:07
1
2,245 by rmoretti
Mon, 2015-05-25 11:07
Normal topic multiple symmetry definition files
by sdh_h » Wed, 2016-06-29 09:31
1
1,874 by rmoretti
Wed, 2016-06-29 10:20
Normal topic Fixing certain residues during refinement
by ckdenist » Thu, 2019-08-29 14:00
1
1,756 by jadolfbr
Thu, 2019-08-29 14:29
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
2,074 by smlewis
Mon, 2014-04-21 06:47
Normal topic decoy vs pose
by Anonymous » Fri, 2012-06-15 02:46
1
2,720 by smlewis
Mon, 2014-04-21 06:47
Normal topic patch file modification for ser_phosphorylated.txt
by hajar » Sun, 2020-06-21 00:49
1
1,646 by matteoferla
Tue, 2020-06-23 10:58
Normal topic ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g
by yliang20 » Mon, 2022-08-08 16:59
1
970 by rmoretti
Tue, 2022-08-09 06:52
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
2,348 by smlewis
Mon, 2014-04-21 06:47
Closed topic unidentifiable C++ exception in both linux and window.
by wajidarshad » Tue, 2015-10-27 08:12
1
2,000 by rmoretti
Tue, 2015-10-27 08:46
Normal topic Error in src/protocols/membrane/util.cc line: 1224
by renedominik » Tue, 2020-02-11 08:10
1
1,410 by renedominik
Wed, 2020-02-12 06:16
Normal topic Recommendations for CoupledMoves enzyme redesign
by dgm3 » Thu, 2021-03-04 10:53
1
1,314 by aloshbau
Tue, 2021-03-09 02:47
Normal topic How to design a stand-alone loop from a binding interface?
by guangdianzi3 » Fri, 2011-02-11 21:11
1
2,194 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
2,193 by smlewis
Mon, 2014-04-21 06:47
Normal topic make_fragments.pl without sparks
by nannemdp » Mon, 2014-06-09 13:18
1
2,239 by rmoretti
Tue, 2014-06-10 11:34
Normal topic Installing rosetta 3.0
by dalemu » Thu, 2009-09-24 13:28
1
2,793 by smlewis
Mon, 2014-04-21 06:47
Normal topic Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation
by jurkm » Mon, 2011-05-02 03:00
1
3,231 by smlewis
Mon, 2014-04-21 06:47
Normal topic Combine flags file with command line arguments?
by cossio » Mon, 2014-12-22 13:52
1
3,235 by smlewis
Tue, 2014-12-23 13:58
Normal topic can not find a residue type that matches the residue HIS_P:NtermProteinFull
by tarsis » Wed, 2017-04-05 08:51
1
2,680 by rmoretti
Fri, 2017-04-14 08:37
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
2,005 by smlewis
Mon, 2018-04-16 16:32
Normal topic How to determine the value size in block of *.cst files?
by weifulei » Sun, 2019-05-05 19:56
1
1,651 by rmoretti
Tue, 2019-07-09 15:48
Normal topic Using specific rotamers
by sahn97 » Fri, 2022-08-26 13:45
1
731 by rmoretti
Fri, 2022-08-26 14:51
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
2,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
2,418 by smlewis
Mon, 2014-04-21 06:47
Normal topic Building Rosetta PROBLEM
by nunesjulioc » Fri, 2010-02-26 06:03
1
1,997 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem in 3D structure building of ss DNA aptamer
by irshadbaig » Sun, 2013-11-17 20:15
1
4,020 by rmoretti
Mon, 2014-04-21 06:48
Normal topic I made a RDKit Chem.Mol to params converter — feedback welcome!
by matteoferla » Sun, 2020-05-03 10:14
1
1,773 by jadolfbr
Sun, 2020-05-03 19:38
Normal topic Generate template parameter file for a polymer
by anarob » Fri, 2022-06-10 11:05
1
718 by matteoferla
Fri, 2022-06-17 10:38
Normal topic combine silent.out file
by venkatazb » Fri, 2016-07-22 05:22
1
3,503 by smlewis
Fri, 2016-07-22 07:31
Normal topic Rosetta structure refinement alters bound ligand
by ahmadkhalifa » Mon, 2018-07-23 07:49
1
1,978 by rmoretti
Fri, 2018-08-03 08:59
Normal topic Structural Similarity
by Soler » Mon, 2021-11-29 22:02
1
1,040 by rmoretti
Tue, 2021-11-30 07:41
Normal topic ab initio protein structure prediction
by croshong » Wed, 2009-12-16 23:25
1
2,213 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
2,301 by rmoretti
Mon, 2014-04-21 06:47
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
2,192 by smlewis
Mon, 2014-04-21 06:47
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
3,004 by smlewis
Fri, 2014-02-28 05:45
Normal topic optimisation of a protein-protein interface
by sdh_h » Thu, 2017-05-04 05:06
1
2,179 by rmoretti
Mon, 2017-05-15 09:03
Normal topic clean_pdb_keep_ligand.py IndexError
by to-qinbin@163.com » Sat, 2022-09-10 04:04
1
786 by rmoretti
Mon, 2022-09-12 06:58
Normal topic protein-protien docking with uniform trans
by lkingsle » Thu, 2012-02-09 07:19
1
2,659 by mpacella
Mon, 2014-04-21 06:47
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
2,416 by rmoretti
Thu, 2015-04-02 12:52
Normal topic TEST - who got this email?
by smlewis » Mon, 2016-05-23 17:24
1
1,807 by rmoretti
Tue, 2016-07-12 08:48
Closed topic MakeRotLib
by yinasun » Fri, 2019-07-26 02:20
1
1,594 by rmoretti
Mon, 2019-08-26 15:01
Normal topic MoveMap file for backrub
by jiyongpark.77 » Sat, 2009-07-18 03:53
1
2,418 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to specify a specific rotamer
by Lior_UCSF » Wed, 2018-02-21 20:35
1
1,553 by rmoretti
Thu, 2018-02-22 09:29
Normal topic Error in molfile_to_params_polymer.py for NCAA
by kkuo33 » Mon, 2020-05-18 16:41
1
1,690 by matteoferla
Sat, 2020-05-23 03:09
Normal topic Clustering problem
by Suuo » Tue, 2021-04-20 01:40
1
1,180 by rmoretti
Tue, 2021-04-20 13:06
Normal topic dealing with Large ligand in Ligand docking and enzyme design
by rohi » Mon, 2021-01-04 09:58
1
1,209 by rmoretti
Tue, 2021-02-09 10:48
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
1
939 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,776 by smlewis
Mon, 2014-04-21 06:47
Normal topic Site-wide installations and 64-bit builds
by bene » Tue, 2009-10-20 10:16
1
2,065 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
2,222 by smlewis
Mon, 2014-04-21 06:47
Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
3,476 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Non-ideal residue detected
by cnelson » Thu, 2010-07-01 12:20
1
2,240 by smlewis
Mon, 2014-04-21 06:47
Normal topic Modeling
by hwillis » Wed, 2009-08-12 11:07
1
2,143 by frichter
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,678 by smlewis
Mon, 2014-04-21 06:47
Normal topic Could the Relax step be used separately ? (solved)
by wszjzhang » Tue, 2010-03-30 15:00
1
2,114 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,572 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
2,097 by rmoretti
Sun, 2016-02-21 06:38
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,990 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
1,446 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,363 by matteoferla
Sat, 2020-06-20 03:56
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
1,537 by matteoferla
Thu, 2021-06-03 08:24
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
1,061 by mb0261
Mon, 2022-09-26 07:50
Normal topic Residue not found in pose
by lzx32 » Fri, 2011-09-09 03:42
1
2,805 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Symmetric Docking (Making Trimer from Monomerics Units)
by sdg_lab » Thu, 2012-04-12 09:21
1
2,236 by rmoretti
Mon, 2014-04-21 06:47
Normal topic AtomTree::torsion_angle() can't find dof! in match and enzdes
by petrikigor » Fri, 2012-10-19 09:49
1
2,602 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Clustering and Protein Preparation for docking
by MRH » Sun, 2013-08-25 22:01
1
3,420 by rmoretti
Mon, 2014-04-21 06:48
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
2,287 by rmoretti
Mon, 2016-09-05 09:39
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
2,155 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,984 by rmoretti
Fri, 2015-07-03 13:51
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,456 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
2,399 by IAndre
Mon, 2014-04-21 06:47
Normal topic Model Extraction
by mdweirna » Tue, 2010-04-13 15:28
1
2,006 by smlewis
Mon, 2014-04-21 06:47
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
2,321 by rmoretti
Mon, 2014-12-15 02:37
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