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Rosetta 3 - General
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rosetta run error by isengupta13 » Thu, 2010-06-03 19:00 |
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3,157 |
by aminzia Fri, 2019-07-26 13:14 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,498 |
by sayan500 Tue, 2019-07-30 22:20 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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1,218 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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RosettaDesign by ac.research » Sun, 2019-07-21 01:20 |
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3,418 |
by ac.research Sat, 2019-08-03 08:12 |
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Where to find old version of Rosetta with git version number by mao_x » Wed, 2019-08-07 01:22 |
2 |
2,426 |
by mao_x Thu, 2019-08-08 01:37 |
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Flag to not use PDB ligands by matteoferla » Wed, 2019-08-21 10:14 |
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1,940 |
by matteoferla Wed, 2019-08-21 11:58 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
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2,487 |
by matteoferla Thu, 2019-08-22 05:39 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
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1,444 |
by rmoretti Mon, 2019-08-26 14:52 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
1,579 |
by rmoretti Mon, 2019-08-26 15:00 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,631 |
by rmoretti Mon, 2019-08-26 15:01 |
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problem parsing a THR residue by decrSTL » Wed, 2019-08-21 12:25 |
4 |
2,945 |
by decrSTL Tue, 2019-08-27 10:24 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,798 |
by jadolfbr Thu, 2019-08-29 14:29 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
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1,613 |
by danpf Tue, 2019-09-03 10:39 |
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lysine-aspartate isopeptide bond by matteoferla » Tue, 2016-11-01 10:54 |
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12,892 |
by ablakely7 Wed, 2019-09-11 15:33 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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1,544 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,534 |
by rmoretti Wed, 2019-09-18 10:49 |
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how to perform model quality assessment of rosetta generated models? by Danielsebas » Tue, 2019-09-24 05:03 |
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957 |
by Danielsebas Tue, 2019-09-24 05:03 |
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Ab initio structure prediction for long amino acid sequence by maruhuang » Fri, 2019-08-02 03:38 |
4 |
3,085 |
by maruhuang Thu, 2019-09-26 18:55 |
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Does Rosetta have a separate refinement function? by ylwang » Tue, 2019-09-24 19:08 |
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2,021 |
by ylwang Tue, 2019-10-08 18:34 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
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2,605 |
by rmoretti Tue, 2019-10-22 07:05 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
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1,373 |
by rmoretti Mon, 2019-11-04 12:54 |
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Can I thread a two chained structure in RosettaCM? by ahmadkhalifa » Mon, 2018-01-08 09:41 |
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3,462 |
by aaxx Wed, 2019-11-06 01:44 |
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AbInitioRelax.mpi Hangs - Waiting for Job Request by nleroy » Thu, 2019-10-31 07:30 |
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2,200 |
by nleroy Fri, 2019-11-08 12:44 |
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protein surface design by tatsiana.bylund » Sun, 2019-09-15 03:44 |
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2,010 |
by dfcoelho Tue, 2019-11-19 10:16 |
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Is cis-Glycine okay? by matteoferla » Tue, 2019-11-19 07:26 |
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3,652 |
by matteoferla Wed, 2019-11-20 02:32 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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1,830 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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1,186 |
by fgomes Fri, 2019-11-22 19:12 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
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2,310 |
by ylwang Sat, 2019-11-23 06:26 |
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Performace Benchmarking by Tushar Kush » Wed, 2019-12-04 02:50 |
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2,560 |
by smlewis Wed, 2019-12-04 13:07 |
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Rosetta Antibody: Unable to open file and terminates by denatured » Thu, 2019-12-12 11:26 |
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2,505 |
by denatured Fri, 2019-12-13 11:19 |
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Seasons greetings with a Christmas tree shaped protein by matteoferla » Sun, 2019-12-22 03:37 |
4 |
3,009 |
by matteoferla Mon, 2019-12-23 07:24 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
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1,382 |
by matteoferla Wed, 2020-01-01 04:30 |
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Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size by dasdevashishdas » Fri, 2018-10-12 00:55 |
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1,703 |
by jyy Mon, 2020-01-13 17:19 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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1,551 |
by jkleman Thu, 2020-01-16 11:05 |
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Rosetta Resfile header by G Mustafa » Mon, 2020-01-20 06:45 |
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2,268 |
by G Mustafa Tue, 2020-01-21 06:04 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,842 |
by j.schmue Tue, 2020-01-28 13:31 |
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What is the best way to make a residue-specific SASA constraint? by jmaly » Thu, 2020-01-23 16:40 |
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2,393 |
by matteoferla Wed, 2020-01-29 12:18 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
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1,582 |
by dfcoelho Tue, 2020-02-04 07:45 |
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Rosetta job distribution error by ss » Thu, 2019-08-01 09:26 |
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5,802 |
by ac.research Mon, 2020-02-10 08:19 |
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DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
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2,810 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,441 |
by renedominik Wed, 2020-02-12 06:16 |
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Job Distribution Error by ac.research » Mon, 2020-02-10 08:22 |
2 |
2,062 |
by ac.research Fri, 2020-02-14 23:33 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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910 |
by chrisHKL Mon, 2020-02-17 09:12 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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1,328 |
by sheehajh Fri, 2020-02-21 12:41 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
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1,558 |
by smlewis Wed, 2020-03-04 07:40 |
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NR Database Download in install_dependencies.pl (for make_fragments.pl) Broken by Jacob_Verburgt » Tue, 2020-03-10 08:58 |
6 |
5,503 |
by Jacob_Verburgt Wed, 2020-03-11 05:18 |
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I generated a table of images & info of the premade NCAA params in the database by matteoferla » Sun, 2020-02-16 06:27 |
4 |
2,996 |
by matteoferla Sat, 2020-03-21 09:14 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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1,022 |
by matteoferla Sun, 2020-03-22 05:29 |
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I got so many atoms in one residue by ylwang » Tue, 2020-03-24 04:40 |
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2,112 |
by ylwang Tue, 2020-03-24 19:35 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
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1,457 |
by rmoretti Wed, 2020-04-01 10:10 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,299 |
by matteoferla Fri, 2020-04-10 02:40 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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1,709 |
by vmulligan Sat, 2020-04-11 17:40 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:18 |
2 |
2,192 |
by jalan Sun, 2020-04-12 08:01 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
1 |
1,367 |
by matteoferla Tue, 2020-04-14 03:36 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
0 |
956 |
by YuFei Wed, 2020-04-22 17:27 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
2 |
1,899 |
by jalan Thu, 2020-04-23 05:19 |
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"caught exception" for PDB with membrane "DUM" residues by nitroamos » Wed, 2018-05-30 08:35 |
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3,841 |
by Awagner7 Tue, 2020-04-28 10:51 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
1 |
1,815 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Error with filter in rosseta_scripts by Osmany Guirola » Mon, 2020-05-11 04:52 |
0 |
951 |
by Osmany Guirola Mon, 2020-05-11 04:52 |
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Output "per-residue" energy score to database by pedro.guillem » Thu, 2020-05-14 04:22 |
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868 |
by pedro.guillem Thu, 2020-05-14 04:22 |
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How to specify constraints during fold-and-dock? by sarah_b » Tue, 2020-05-12 01:55 |
3 |
2,472 |
by matteoferla Thu, 2020-05-14 07:01 |
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Errors in Interface design by Kazu » Thu, 2019-10-31 17:48 |
4 |
3,006 |
by Kazu Mon, 2020-05-18 10:52 |
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Side-chain grafting in fixed scaffold by Kazu » Wed, 2020-05-20 08:45 |
0 |
1,010 |
by Kazu Wed, 2020-05-20 11:58 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,719 |
by matteoferla Sat, 2020-05-23 03:09 |
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Protein Interface Design using PSSM by ccruz » Sun, 2020-05-24 14:27 |
1 |
1,986 |
by nannemdp Tue, 2020-05-26 06:33 |
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Method for WebServer Fragment Generation by Jacob_Verburgt » Tue, 2020-06-02 07:29 |
2 |
2,042 |
by Jacob_Verburgt Tue, 2020-06-02 10:26 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
1,155 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
1,338 |
by hajar Wed, 2020-06-10 11:17 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
0 |
915 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Structure refinement for helical assembles using Rosetta by xiaoyanzi » Thu, 2020-06-18 00:34 |
0 |
961 |
by xiaoyanzi Thu, 2020-06-18 00:36 |
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error when using script best_ifaceE.py by windmill » Thu, 2020-06-18 21:30 |
1 |
1,271 |
by windmill Thu, 2020-06-18 21:32 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
1 |
1,400 |
by matteoferla Sat, 2020-06-20 03:56 |
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How to create a native file for Protein-Protein docking by Kotimedidhi » Mon, 2020-06-22 08:10 |
0 |
850 |
by Kotimedidhi Mon, 2020-06-22 08:10 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
1,694 |
by matteoferla Tue, 2020-06-23 10:58 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
0 |
888 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
1 |
1,403 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
0 |
909 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
1 |
1,833 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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Unrecognized atom parameter with denovo_density by kalabharath » Mon, 2020-06-29 06:59 |
0 |
952 |
by kalabharath Mon, 2020-06-29 06:59 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
1 |
1,375 |
by vmulligan Mon, 2020-06-29 13:09 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
0 |
1,054 |
by LTJ Mon, 2020-07-06 14:13 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
2 |
1,765 |
by mxp Wed, 2020-07-08 23:25 |
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Make fragments by jeanramos » Mon, 2020-07-13 00:56 |
0 |
835 |
by jeanramos Mon, 2020-07-13 00:56 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
0 |
1,112 |
by matteoferla Tue, 2020-07-14 01:51 |
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This element is not expected. by ac.research » Fri, 2017-10-13 03:47 |
6 |
7,448 |
by vmulligan Thu, 2020-07-16 23:31 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
0 |
907 |
by matteoferla Wed, 2020-07-22 03:08 |
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Quick mysql output question by pedro.guillem » Thu, 2020-07-23 03:45 |
0 |
817 |
by pedro.guillem Thu, 2020-07-23 03:45 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
1 |
1,402 |
by matteoferla Fri, 2020-07-24 03:06 |
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type of docking by rohi » Mon, 2020-07-06 06:55 |
11 |
8,064 |
by rohi Sun, 2020-07-26 17:03 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
2 |
1,704 |
by Smbat Thu, 2020-07-30 03:07 |
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selecting pivot_residue in Backrub for ensemble generation by rohi » Fri, 2020-08-07 15:41 |
6 |
4,147 |
by matteoferla Tue, 2020-08-11 10:00 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
2 |
2,594 |
by brspurri Thu, 2020-08-20 13:22 |
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Compile C++ Rosetta to Pyrosetta ERROR by michelleqyh » Fri, 2020-08-21 09:00 |
0 |
886 |
by michelleqyh Fri, 2020-08-21 09:00 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
0 |
922 |
by nferruz Fri, 2020-08-28 06:05 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
2 |
1,850 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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How RosettaCM can perform part of C terminal domain (CTD) structure prediction without proper template structures (coordinates) by haom » Tue, 2020-09-01 13:21 |
0 |
914 |
by haom Tue, 2020-09-01 18:50 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
0 |
1,068 |
by jmaly Wed, 2020-09-02 16:16 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
0 |
1,014 |
by haom Wed, 2020-09-09 09:19 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
2 |
1,821 |
by bjharris Wed, 2020-09-09 20:04 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
11 |
6,181 |
by matteoferla Sat, 2020-09-12 03:02 |
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