You are here

Rosetta 3 - General

Topic / Topic startersort descending Replies Views Last post
Normal topic Rosetta/PyRosetta on GPU
by ac.research » Mon, 2017-11-06 05:18
1
3,225 by rmoretti
Mon, 2017-11-06 07:36
Normal topic Rosetta3 Tutorials
by smlewis » Fri, 2011-11-18 07:33
8
15,150 by rmoretti
Tue, 2019-07-09 10:24
Normal topic Rosetta3 Tutorials Beta Release
by smlewis » Fri, 2011-08-19 13:35
7
6,280 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.2 cluster application file-reading error
by mdyini » Wed, 2011-03-09 16:59
3
4,754 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta3.3 enzyme_design errors
by jtmacd » Wed, 2012-01-25 03:33
7
6,611 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Rosetta3.5 src/core/pack/dunbrack/RotamerLibrary.cc permission problem
by ytao » Fri, 2013-06-28 12:13
2
2,780 by ytao
Mon, 2014-04-21 06:48
Normal topic Rosetta: Clustering
by sskim » Sat, 2016-06-11 14:44
1
1,518 by rmoretti
Tue, 2016-07-12 08:36
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,796 by xujc
Mon, 2014-04-21 06:47
Normal topic rosetta@home in local PC farm
by jarod » Wed, 2010-05-05 18:31
1
1,719 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaCM density guided rebuilding methodology
by ahmadkhalifa » Thu, 2018-08-30 06:45
4
2,202 by ahmadkhalifa
Thu, 2018-08-30 23:09
Normal topic RosettaCM rename or swap the order of sequences in your alignment file
by ahmadkhalifa » Fri, 2017-12-22 08:42
4
2,650 by rmoretti
Mon, 2018-01-15 15:24
Normal topic RosettaCM: "Ligands must be added to all templates"
by lanselibai » Tue, 2021-06-22 10:42
2
555 by lanselibai
Wed, 2021-06-23 13:21
Normal topic RosettaCM: adding constraints while keeping AUTO constraints
by Michele.Bonus » Sun, 2020-08-30 10:42
2
1,080 by Michele.Bonus
Sun, 2020-08-30 23:06
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
611 by haom
Wed, 2020-09-09 09:19
Normal topic RosettaCM: threading okay, but hybridize loses many secondary structure
by lanselibai » Wed, 2021-06-23 13:51
2
564 by lanselibai
Thu, 2021-06-24 10:16
Normal topic RosettaDesign
by ac.research » Sun, 2019-07-21 01:20
2
2,134 by ac.research
Sat, 2019-08-03 08:12
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
0
773 by ac.research
Mon, 2018-05-14 08:27
Normal topic RosettaDesign Server, reproducing optimized interface conformation
by AlexanderMetz » Thu, 2012-02-09 10:41
1
2,872 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaDock decoys recoring with ZRANK
by cheyuk » Fri, 2014-04-11 01:40
5
6,594 by rmoretti
Thu, 2016-04-28 15:53
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
64 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic RosettaDock-4.0 score term
by Zjq1998 » Wed, 2022-06-29 22:07
1
12 by rmoretti
Thu, 2022-06-30 06:52
Normal topic RosettaDOM
by ndousis » Sun, 2010-12-12 01:08
2
2,527 by ndousis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles
by ge0rgekh0ury » Mon, 2012-01-09 09:01
6
5,000 by Anonymous
Mon, 2014-04-21 06:47
Normal topic RosettaHoles in 3.1
by enoee » Thu, 2010-10-14 07:12
1
1,977 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaHoles?
by kbala » Thu, 2009-07-30 16:52
3
2,967 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch
by jtmacd » Wed, 2012-01-11 06:50
5
8,086 by jtmacd
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in 3.2
by jtmacd » Mon, 2010-12-20 08:04
4
4,060 by jtmacd
Mon, 2014-04-21 06:47
Normal topic RosettaMatch in Rosetta3.2?
by SenyorDrew » Fri, 2010-08-13 07:47
1
2,307 by smlewis
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
1,164 by David
Tue, 2019-01-22 12:23
Normal topic RosettaProtein_Docking
by khadkab@mcmaster.ca » Tue, 2015-06-30 11:28
1
2,534 by rmoretti
Fri, 2015-07-03 13:24
Normal topic RosettaRemodel
by berk » Wed, 2013-07-10 11:21
2
2,134 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic rosettaremodel
by berk » Fri, 2013-06-07 00:42
3
2,571 by jadolfbr
Mon, 2014-04-21 06:48
Normal topic RosettaRemodel gives no increased output when setting higher -num_trajectory
by JW_24 » Tue, 2020-09-22 11:49
2
976 by JW_24
Wed, 2020-09-23 01:27
Normal topic rosettaScore.py has a typo, I think. Can I fix it in my own copy?
by mdeklotz » Thu, 2018-08-02 15:15
4
2,404 by rmoretti
Fri, 2018-08-03 11:39
Normal topic rosettautil module not imported cleanly by python scripts
by franfdez » Tue, 2013-08-27 01:25
1
2,514 by rmoretti
Mon, 2014-04-21 06:48
Normal topic RosettaVIP
by nick.polizzi » Tue, 2013-08-06 15:13
8
5,929 by rmoretti
Mon, 2014-04-21 06:48
Normal topic rosetta_scripts_BOGUS coords warning message
by Karol » Tue, 2016-12-13 02:35
5
4,108 by Karol
Thu, 2016-12-15 01:35
Normal topic Rotamer Library Generation in Rosetta3
by jcminerlanl » Wed, 2016-11-30 07:34
5
4,114 by rmoretti
Tue, 2021-02-09 11:52
Normal topic Rotate chain
by Germanico » Sun, 2021-05-09 16:36
3
939 by danpf
Mon, 2021-05-10 10:04
Normal topic Rotate MOVER
by gw » Wed, 2012-08-15 12:09
5
4,271 by glemmon
Mon, 2014-04-21 06:47
Normal topic rs filter for terms in .sc files
by gw » Sat, 2012-08-18 16:20
4
3,802 by gw
Mon, 2014-04-21 06:47
Normal topic Run PackRotamersMover on specified rotamer set
by pachecoj » Mon, 2014-11-10 06:51
2
2,204 by pachecoj
Tue, 2014-11-11 19:30
Normal topic run Rosetta under windows prompt
by skipper » Fri, 2013-12-20 21:16
3
3,571 by rmoretti
Mon, 2014-04-21 06:48
Normal topic run:test_cycles
by ramin » Sun, 2013-03-10 11:05
1
1,643 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running a ReportFSC mover between two .mrc maps
by ahmadkhalifa » Mon, 2018-03-12 07:52
9
4,212 by brandon.frenz
Tue, 2018-03-20 10:28
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,760 by smlewis
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
950 by Jhreed
Fri, 2016-07-08 13:44
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,269 by tevang
Mon, 2014-04-21 06:47
Normal topic running Rosetta locally using commands generated by the Robetta web server
by cneale » Sat, 2014-03-15 11:48
3
3,398 by cneale
Fri, 2014-03-21 18:13
Normal topic running Rosetta with MPI
by rohi » Sat, 2020-09-05 16:06
1
965 by rmoretti
Tue, 2021-02-09 13:44
Normal topic Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type"
by zhoubin » Sun, 2021-02-28 08:51
3
915 by zhoubin
Mon, 2021-03-01 22:11
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,575 by rmoretti
Sun, 2016-02-21 06:38
Normal topic Running time of Rosetta/FlexPepDock
by gerdos » Thu, 2015-10-15 02:14
2
2,063 by gerdos
Fri, 2015-10-16 03:01
Normal topic runtime error
by exchhattu » Wed, 2010-03-03 02:54
2
2,001 by exchhattu
Mon, 2014-04-21 06:47
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,279 by sumukh21
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
641 by matteoferla
Sun, 2020-03-22 05:29
Normal topic SASA packing score in Rosetta 3.1
by enoee » Wed, 2010-07-28 01:45
6
5,510 by smlewis
Mon, 2014-04-21 06:47
Hot topic SCons compilation error (Windows XP, 32bit)
by CRickert » Mon, 2009-08-03 00:57
28
19,163 by Marsia
Mon, 2014-04-21 06:47
Normal topic score against rmsd plot of designs
by LanMei » Mon, 2022-03-21 22:46
2
210 by LanMei
Tue, 2022-03-22 20:45
Normal topic Score Differences between Ab Initio Scoring and Rescore
by mmarlett » Wed, 2016-06-15 09:14
2
2,008 by mmarlett
Thu, 2016-06-16 07:06
Normal topic score function for centroid mode
by MarkW » Thu, 2015-02-26 08:56
1
1,922 by jadolfbr
Fri, 2015-02-27 11:08
Normal topic Score function: unable to open input_files/1qys.pdb
by Cyrrusm » Tue, 2020-10-13 11:35
1
818 by rmoretti
Tue, 2020-10-13 11:40
Normal topic score terms
by qlj » Wed, 2013-07-03 08:00
3
3,477 by rmoretti
Mon, 2014-04-21 06:48
Normal topic score.sc only shows total_score and with all zeros
by johnnytam100 » Mon, 2022-06-06 20:04
2
95 by johnnytam100
Tue, 2022-06-07 19:18
Normal topic scorefunction Talaris2013
by dave » Tue, 2015-03-03 02:13
1
1,947 by rmoretti
Thu, 2015-04-02 12:52
Normal topic score_jd2.macosclangrelease No such file or directory
by ahmadkhalifa » Mon, 2017-11-27 09:26
3
2,638 by everyday847
Tue, 2017-11-28 13:07
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,589 by Trentage
Mon, 2014-04-21 06:47
Normal topic Scoring Electrostatics
by aroop » Tue, 2012-08-07 11:41
5
4,390 by aroop
Mon, 2014-04-21 06:47
Normal topic scoring function changed from 2.3?
by jarod » Mon, 2010-04-12 18:56
1
1,536 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring in Rosetta
by Elijah_Hix » Wed, 2021-07-14 06:48
1
563 by rmoretti
Wed, 2021-07-14 07:07
Normal topic scoring models
by peony » Fri, 2013-12-06 02:45
5
4,671 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,412 by smlewis
Mon, 2014-04-21 06:47
Normal topic scoring with omega energy term
by SergeyP » Thu, 2017-03-09 12:03
2
1,981 by SergeyP
Fri, 2017-03-10 11:16
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
605 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Seasons greetings with a Christmas tree shaped protein
by matteoferla » Sun, 2019-12-22 03:37
4
1,885 by matteoferla
Mon, 2019-12-23 07:24
Normal topic secondary structure prediction for generation of fragment libraries
by xpzhang » Sat, 2011-06-25 00:47
1
3,107 by smlewis
Mon, 2014-04-21 06:47
Normal topic Secondary Structure Relax
by ac.research » Sat, 2018-03-17 10:50
5
3,090 by smlewis
Wed, 2018-03-21 08:42
Normal topic SecundaryStructure Filter
by Soler » Sat, 2021-11-20 23:41
0
338 by Soler
Sat, 2021-11-20 23:41
Normal topic segfault in membrane_abinitio2.mpi
by siegert » Sat, 2014-06-14 15:56
1
1,698 by yarovoy
Wed, 2016-03-30 12:37
Normal topic Segfault with docking protocol
by almeida85 » Mon, 2021-02-08 06:39
2
746 by almeida85
Mon, 2021-02-08 09:50
Normal topic Segmentation fault
by Hongtham » Mon, 2014-12-15 20:21
3
4,169 by Sandy
Fri, 2015-08-07 15:49
Normal topic Segmentation fault (core dumped) denovo_density.linuxgccrelease
by ahmadkhalifa » Sun, 2018-04-15 17:52
1
1,497 by smlewis
Mon, 2018-04-16 16:32
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
403 by dkesar
Fri, 2021-06-04 19:09
Normal topic segmentation fault when using design_hpatch scoring function
by rbjacob » Mon, 2018-04-09 11:05
5
2,671 by smlewis
Wed, 2018-04-11 11:45
Normal topic selecting pivot_residue in Backrub for ensemble generation
by rohi » Fri, 2020-08-07 15:41
6
2,345 by matteoferla
Tue, 2020-08-11 10:00
Normal topic Selecting Top Scoring Decoys
by kalabharath » Thu, 2011-10-20 22:08
2
2,297 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
690 by taylorjones
Mon, 2021-04-05 13:17
Normal topic sequence_tolerance is very slow when -ms:num_packs > 1
by coomteng@gmail.com » Thu, 2016-08-25 13:17
3
2,470 by coomteng@gmail.com
Fri, 2016-08-26 00:01
Normal topic sequence_tolerance optimize the binding to chemical compounds
by coomteng@gmail.com » Tue, 2015-05-05 07:32
3
2,576 by rmoretti
Mon, 2015-05-25 11:00
Normal topic Setting output values using a database (with relax app)
by pedro.guillem » Thu, 2020-05-14 04:33
1
852 by pedro.guillem
Wed, 2020-06-24 04:41
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,608 by rmoretti
Thu, 2016-04-28 15:49
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
137 by ajasja
Mon, 2022-05-23 07:19
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,205 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic short peptide fragment file generation
by cheyuk » Mon, 2016-07-11 00:04
4
3,593 by smlewis
Wed, 2016-07-13 23:41
Normal topic should rosetta3.1 do prepacking before docking?
by lqzhang » Thu, 2010-01-07 12:15
3
2,600 by smlewis
Mon, 2014-04-21 06:47
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
581 by matteoferla
Thu, 2021-04-01 04:06
Normal topic Side-chain grafting in fixed scaffold
by Kazu » Wed, 2020-05-20 08:45
0
616 by Kazu
Wed, 2020-05-20 11:58
Normal topic Side-chain packing with multiple chains
by pachecoj » Mon, 2014-04-21 16:53
3
3,577 by jadolfbr
Mon, 2014-04-21 21:05
Normal topic side-chain refinement
by qlj » Wed, 2013-02-20 04:40
6
7,179 by qlj
Mon, 2014-04-21 06:47
Normal topic sign of ddG of mutation
by Lindsay » Wed, 2013-11-27 00:25
2
3,722 by Lindsay
Mon, 2014-04-21 06:48
New posts
No new posts
Hot topic with new posts
Hot topic without new posts
Sticky topic
Locked topic
Subscribe to RSS - Rosetta 3 - General