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Rosetta 3 - General

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Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
1,511 by sayan500
Tue, 2019-07-30 22:20
Normal topic error in ligand docking
by rohi » Fri, 2020-11-13 10:52
1
1,976 by rmoretti
Fri, 2020-11-13 12:58
Normal topic Error in Hybridize of Rosetta Comparative Modeling.
by Ivan » Fri, 2019-11-01 07:46
1
1,387 by rmoretti
Mon, 2019-11-04 12:54
Normal topic Error in H3_modeling_scores.fasc file from antibody_H3 program
by Brian Wiley » Sat, 2023-02-04 23:41
0
430 by Brian Wiley
Sat, 2023-02-04 23:43
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
2
1,886 by Alvin Yang
Wed, 2023-10-04 03:34
Normal topic Error in enzyme_design.default.linuxgccrelease: corrupted size vs. prev_size
by dasdevashishdas » Fri, 2018-10-12 00:55
1
1,725 by jyy
Mon, 2020-01-13 17:19
Normal topic error in cluster running
by albumns » Mon, 2011-09-05 00:24
1
2,597 by rmoretti
Mon, 2014-04-21 06:47
Normal topic error for the pose reading:TRP:NtermProteinFull:triazolamerC missing: C1
by wyb » Fri, 2017-12-01 17:50
3
3,885 by rmoretti
Sat, 2017-12-16 12:19
Normal topic Error during docking with proteins containing norleucine
by aaj » Mon, 2016-04-25 15:04
1
1,918 by rmoretti
Thu, 2016-04-28 14:47
Normal topic error during docking
by zhisheng » Thu, 2012-02-02 12:10
10
9,449 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error about rifdocking
by ng98 » Mon, 2024-01-08 16:21
1
292 by rmoretti
Tue, 2024-01-09 23:41
Normal topic error about 'std::bad_alloc' during running
by zhisheng » Mon, 2011-01-10 09:45
4
11,424 by smlewis
Mon, 2014-04-21 06:47
Normal topic Error : seqpos <= size()
by phanvy » Sun, 2014-10-05 17:20
4
5,719 by phanvy
Wed, 2014-10-08 01:42
Normal topic ERROR - PDB's with occupancy field equal '1.0'
by khanhbinh » Sun, 2012-09-23 09:38
1
2,348 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Error Atom_::dihedral_between_bonded_children
by abiadak » Mon, 2012-07-30 06:34
2
3,985 by abiadak
Mon, 2014-04-21 06:47
Normal topic enzyme design implementation
by rohi » Wed, 2020-12-16 09:54
1
1,395 by rmoretti
Tue, 2021-02-09 11:30
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
0
825 by cryosky
Sun, 2021-09-26 13:24
Normal topic enzyme design and scoring function
by rohi » Fri, 2021-06-25 10:29
0
769 by rohi
Fri, 2021-06-25 10:29
Normal topic Enzyme Design
by bharat_46010 » Tue, 2014-11-25 23:55
4
6,187 by bharat_46010
Mon, 2014-12-15 20:51
Normal topic enzdes error
by bo » Tue, 2012-08-21 09:12
4
4,349 by bo
Mon, 2014-04-21 06:47
Normal topic env energy term
by bazzoli » Wed, 2018-10-10 01:59
0
1,134 by bazzoli
Wed, 2018-10-10 01:59
Normal topic Enumeration of Amino Acid identities
by achambe » Wed, 2016-06-15 15:28
1
1,948 by rmoretti
Wed, 2016-06-15 16:06
Normal topic Entropy calculation
by abdullah_ahmed » Wed, 2010-12-01 07:52
1
2,457 by smlewis
Mon, 2014-04-21 06:47
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
552 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
1,157 by mb0261
Mon, 2022-09-26 07:50
Normal topic Energy updates in Rosetta 3.3
by gipsonb » Tue, 2011-10-11 09:58
2
2,724 by gipsonb
Mon, 2014-04-21 06:47
Normal topic energy units
by jtmacd » Mon, 2009-07-06 10:39
1
3,786 by smlewis
Mon, 2014-04-21 06:47
Normal topic energy minimization of loop only
by jtmacd » Wed, 2011-01-12 07:09
9
10,890 by lanselibai
Wed, 2014-10-15 01:41
Normal topic Energy minimization of a crystal structure with residues mutated in pymol
by bharat_46010 » Wed, 2014-05-21 19:52
1
3,985 by rmoretti
Fri, 2014-05-23 08:09
Normal topic Energy Calculation in Rosetta3.4
by sdg_lab » Thu, 2012-04-12 04:49
6
11,592 by rmoretti
Mon, 2014-04-21 06:47
Normal topic Energy calculation for protein design
by Filipe » Sat, 2011-11-26 15:01
4
7,422 by Filipe
Mon, 2014-04-21 06:47
Normal topic Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc )
by sdg_lab » Thu, 2012-04-12 08:49
1
2,088 by smlewis
Mon, 2014-04-21 06:47
Normal topic Encouraging better packing in enzyme_design
by linucks » Thu, 2018-03-01 07:05
5
5,897 by linucks
Wed, 2018-04-25 08:50
Normal topic Efficient implementation of MPI with protein design programs
by zachdebruine » Thu, 2018-06-28 10:41
5
4,644 by smlewis
Tue, 2018-07-03 11:22
Normal topic dun10
by jadolfbr » Thu, 2012-01-19 12:16
5
5,183 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,614 by rmoretti
Mon, 2014-04-21 06:48
Normal topic double mutations scan
by Lindsay » Fri, 2012-04-27 12:51
2
3,045 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Don't want to output the design structure
by Lindsay » Wed, 2012-05-02 08:02
6
5,782 by Anonymous
Mon, 2014-04-21 06:47
Normal topic DomainAssembly Mover with constraints (using RosettaScripts)
by resiros » Wed, 2016-09-21 11:19
3
3,863 by rmoretti
Mon, 2016-11-14 14:21
Normal topic Domain Insertion equivalent in Rosetta 3.2
by SenyorDrew » Wed, 2011-02-09 09:47
1
2,170 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does the fold count reset if abinitio is restarted?
by burkheadlab » Mon, 2011-06-13 11:39
10
9,868 by rmoretti
Thu, 2017-02-02 08:32
Normal topic Does the energy score output by fixbb design have unit?
by Lindsay » Mon, 2012-06-18 15:03
2
3,132 by Lindsay
Mon, 2014-04-21 06:47
Normal topic Does Rosetta recognise OXT atom type in PDB.?
by monos_morpheus » Mon, 2011-04-11 23:57
4
5,500 by monos_morpheus
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have homology modeling protocol?
by SunH » Thu, 2010-11-04 07:36
3
4,315 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have an app for detecting brakes and clashes in proteins
by Anatol » Sat, 2012-09-08 15:48
3
4,490 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta have a class diagram for each class in the source code?
by ylwang » Thu, 2019-11-21 04:24
3
2,338 by ylwang
Sat, 2019-11-23 06:26
Normal topic does rosetta good at peptide-protein docking?
by albumns » Mon, 2010-12-27 18:51
3
5,276 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does Rosetta 3.1 have the 9999 limitation?
by wtscrystal » Sat, 2009-11-07 01:18
1
2,262 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does RNA parses checkpoint matrix as well as protein
by qlj » Wed, 2014-03-05 06:03
2
2,924 by qlj
Thu, 2014-03-06 22:20
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
924 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic Does comparative modeling works for membrane proteins
by justin » Wed, 2012-03-21 04:58
1
2,254 by smlewis
Mon, 2014-04-21 06:47
Normal topic Does a negative Rosetta dG imply a favorable process?
by cossio » Tue, 2014-12-09 05:13
4
4,865 by lanselibai
Tue, 2014-12-16 10:48
Normal topic Documentation missing in MultiGraft
by aroop » Thu, 2012-03-15 07:39
2
3,047 by aroop
Mon, 2014-04-21 06:47
Normal topic dock_mcm not found
by libai2098 » Mon, 2011-03-14 00:02
1
2,264 by smlewis
Mon, 2014-04-21 06:47
Normal topic DockingProtocol mover ensemble error
by dfcoelho » Tue, 2018-10-16 08:32
2
2,645 by brspurri
Thu, 2020-08-20 13:22
Normal topic Docking with glutathione
by phanvy » Wed, 2015-04-29 22:25
1
2,074 by rmoretti
Thu, 2015-04-30 07:13
Normal topic docking using rosetta3.1 and rosetta2.3 leads to very different results
by lqzhang » Thu, 2010-01-14 11:54
1
2,168 by sid
Mon, 2014-04-21 06:47
Normal topic Docking tree issues
by salvatta » Tue, 2018-07-17 05:57
5
5,151 by salvatta
Mon, 2018-09-10 10:04
Normal topic docking mover(s) in rosetta
by aaj » Mon, 2016-01-25 02:38
2
2,759 by aaj
Mon, 2016-02-22 07:50
Normal topic Docking mover
by Soler » Sat, 2022-02-12 20:48
1
982 by jadolfbr
Sat, 2022-02-12 23:16
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
0
1,206 by fgomes
Fri, 2019-11-22 19:12
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,706 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic Docking individual residue ussing RosettaDock
by a-eatemadi@razi... » Wed, 2017-09-06 05:50
1
1,752 by rmoretti
Wed, 2017-09-06 08:47
Normal topic Docking failure
by khanhbinh » Sun, 2012-09-23 22:19
2
3,191 by khanhbinh
Mon, 2014-04-21 06:47
Normal topic Docking double-stranded DNA to a protein
by xpzhang » Tue, 2012-01-31 12:35
5
8,929 by xpzhang
Mon, 2014-04-21 06:47
Normal topic Docking antibody to membrane protein
by Yegor_Ko » Thu, 2023-10-12 07:37
2
588 by Yegor_Ko
Fri, 2023-10-20 01:35
Normal topic Docking an iron atom to a peptide
by buzb » Wed, 2011-01-26 09:49
12
14,465 by smlewis
Mon, 2014-04-21 06:47
Hot topic Docking a protein into a symmetrical complex
by saxen » Fri, 2011-04-08 22:24
15
13,607 by saxen
Mon, 2014-04-21 06:47
Normal topic Docking a ligand to two movable domains of a protein
by brspurri » Wed, 2018-05-16 08:27
1
1,636 by rmoretti
Thu, 2018-06-28 14:22
Normal topic Docking 2 proteins including ligands
by einew » Tue, 2011-03-08 13:33
3
3,689 by einew
Mon, 2014-04-21 06:47
Normal topic Docking + Active Site Design
by bharat_46010 » Sat, 2014-12-13 23:04
7
8,566 by rmoretti
Wed, 2015-01-21 08:43
Normal topic dock & design
by sdh_h » Fri, 2016-09-02 03:07
1
2,331 by rmoretti
Mon, 2016-09-05 09:39
Normal topic Do Rosetta support hydroxide(OH-) and oxide(O2-) params?
by dasdevashishdas » Thu, 2018-08-16 21:15
2
2,322 by dasdevashishdas
Thu, 2018-08-23 18:02
Normal topic dna_denovo
by frits » Fri, 2013-07-12 06:12
3
3,917 by frits
Mon, 2014-04-21 06:48
Normal topic Divide larger low-res. global run into several smaller runs?
by jasnyderjr » Mon, 2015-12-21 17:41
1
2,027 by smlewis
Tue, 2015-12-22 08:31
Normal topic Disulfidize mover
by karenjgonzalez » Wed, 2019-07-31 12:35
0
1,236 by karenjgonzalez
Wed, 2019-07-31 12:35
Normal topic disulfide bridges in loop modeling
by pledor » Fri, 2010-08-06 06:49
2
3,258 by pledor
Mon, 2014-04-21 06:47
Normal topic disulfide bonds using abinitio folding module
by crfenollar » Wed, 2010-02-24 03:26
10
13,229 by lanselibai
Tue, 2015-02-10 14:03
Normal topic distances definition in course-grained (centroid mode) steps
by allan.ferrari » Tue, 2017-01-03 05:15
6
5,443 by allan.ferrari
Tue, 2017-01-03 11:15
Normal topic distance contraints file
by tricia » Wed, 2009-06-10 13:28
0
1,513 by tricia
Mon, 2014-04-21 06:47
Normal topic Discrepancies between Foldit fa_rep score and Rosseta jd2 score fa_rep score
by mrosam » Fri, 2024-04-19 07:57
0
119 by mrosam
Fri, 2024-04-19 07:57
Normal topic Discarding atoms for fixbb
by Jacob-kong » Tue, 2012-06-26 06:23
4
5,436 by Jacob-kong
Mon, 2014-04-21 06:47
Normal topic Difficulties with Protein Docking using Harmonic Restraints
by Parker.deWaal » Fri, 2016-08-19 11:23
1
1,896 by smlewis
Mon, 2016-08-22 10:39
Normal topic Differentiable Energy Function w/ Centroid Representation
by protein_fan » Sun, 2022-03-20 09:39
4
1,668 by protein_fan
Fri, 2022-04-15 17:41
Normal topic Different weights in the constraints for each stage of AbinitioRelax
by allan.ferrari » Sun, 2017-01-15 04:35
2
2,755 by smlewis
Sun, 2017-01-15 18:10
Normal topic different relaxed energy scores for one same protein structure
by ivareve125 » Sun, 2023-07-16 17:54
2
613 by ivareve125
Mon, 2023-07-17 17:37
Normal topic Different dG_separated from RAbD and InterfaceAnalyzer
by brubin » Mon, 2022-12-19 13:58
2
972 by brubin
Tue, 2022-12-20 13:26
Normal topic Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal?
by ericlang » Mon, 2021-07-05 05:43
2
1,325 by ericlang
Mon, 2021-07-05 06:59
Normal topic Difference between score and silent_score when silent files are combined
by justin » Tue, 2012-01-03 06:44
4
4,472 by justin
Mon, 2014-04-21 06:47
Normal topic Difference between interface_delta_X and dG_separated?
by Nicole Deng » Sat, 2020-06-06 06:31
0
1,174 by Nicole Deng
Sat, 2020-06-06 06:40
Normal topic Difference between checkpoint file and PSSM for making fragments
by qlj » Fri, 2014-03-21 22:00
1
4,826 by rmoretti
Sat, 2014-03-22 11:40
Normal topic dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer.
by jyotisutar9 » Thu, 2016-12-01 00:39
6
6,243 by jyotisutar9
Wed, 2016-12-14 09:39
Normal topic dG/dsasa , What is the exact meaning?
by Apiwat » Sun, 2014-04-13 00:38
2
4,451 by Apiwat
Thu, 2014-04-17 09:56
Normal topic Determining Rosetta version from directory
by linucks » Fri, 2014-02-28 04:04
1
3,068 by smlewis
Fri, 2014-02-28 05:45
Normal topic Determine the weights of score functions
by SunH » Thu, 2010-09-02 07:20
3
4,523 by smlewis
Mon, 2014-04-21 06:47
Normal topic Designing Feasible Backbones
by csvajda » Sat, 2022-08-13 08:08
0
599 by csvajda
Sat, 2022-08-13 08:08
Normal topic DesignByCavityProximity: element not expected
by karenjgonzalez » Tue, 2020-01-28 05:16
4
2,839 by karenjgonzalez
Tue, 2020-02-11 08:44
Normal topic Design with non-canonical amino acids (NCAA)
by yinasun » Mon, 2019-08-05 00:34
2
2,522 by matteoferla
Thu, 2019-08-22 05:39
Normal topic Design strategy - One chain at a time OR two chains together?
by tlopes » Wed, 2022-01-05 18:19
0
649 by tlopes
Wed, 2022-01-05 18:19
Normal topic Design on NMR template
by enoee » Wed, 2010-07-21 05:29
1
1,976 by smlewis
Mon, 2014-04-21 06:47
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