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Rosetta 3 - General
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Energy and RG in the new rosetta3.4 ( like RG_Energy.cc and RG_Energy_Fast.cc ) by sdg_lab » Thu, 2012-04-12 08:49 |
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1,843 |
by smlewis Mon, 2014-04-21 06:47 |
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Encouraging better packing in enzyme_design by linucks » Thu, 2018-03-01 07:05 |
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4,826 |
by linucks Wed, 2018-04-25 08:50 |
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Efficient implementation of MPI with protein design programs by zachdebruine » Thu, 2018-06-28 10:41 |
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3,705 |
by smlewis Tue, 2018-07-03 11:22 |
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dun10 by jadolfbr » Thu, 2012-01-19 12:16 |
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4,584 |
by jadolfbr Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,306 |
by rmoretti Mon, 2014-04-21 06:48 |
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double mutations scan by Lindsay » Fri, 2012-04-27 12:51 |
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2,689 |
by Lindsay Mon, 2014-04-21 06:47 |
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Don't want to output the design structure by Lindsay » Wed, 2012-05-02 08:02 |
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5,075 |
by Anonymous Mon, 2014-04-21 06:47 |
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DomainAssembly Mover with constraints (using RosettaScripts) by resiros » Wed, 2016-09-21 11:19 |
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3,318 |
by rmoretti Mon, 2016-11-14 14:21 |
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Domain Insertion equivalent in Rosetta 3.2 by SenyorDrew » Wed, 2011-02-09 09:47 |
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1,887 |
by smlewis Mon, 2014-04-21 06:47 |
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Does the fold count reset if abinitio is restarted? by burkheadlab » Mon, 2011-06-13 11:39 |
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8,606 |
by rmoretti Thu, 2017-02-02 08:32 |
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Does the energy score output by fixbb design have unit? by Lindsay » Mon, 2012-06-18 15:03 |
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2,789 |
by Lindsay Mon, 2014-04-21 06:47 |
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Does Rosetta recognise OXT atom type in PDB.? by monos_morpheus » Mon, 2011-04-11 23:57 |
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4,920 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Does Rosetta have homology modeling protocol? by SunH » Thu, 2010-11-04 07:36 |
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3,848 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have an app for detecting brakes and clashes in proteins by Anatol » Sat, 2012-09-08 15:48 |
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4,021 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta have a class diagram for each class in the source code? by ylwang » Thu, 2019-11-21 04:24 |
3 |
1,868 |
by ylwang Sat, 2019-11-23 06:26 |
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does rosetta good at peptide-protein docking? by albumns » Mon, 2010-12-27 18:51 |
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4,865 |
by smlewis Mon, 2014-04-21 06:47 |
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Does Rosetta 3.1 have the 9999 limitation? by wtscrystal » Sat, 2009-11-07 01:18 |
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1,969 |
by smlewis Mon, 2014-04-21 06:47 |
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Does RNA parses checkpoint matrix as well as protein by qlj » Wed, 2014-03-05 06:03 |
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2,474 |
by qlj Thu, 2014-03-06 22:20 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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724 |
by chrisHKL Mon, 2020-02-17 09:12 |
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Does comparative modeling works for membrane proteins by justin » Wed, 2012-03-21 04:58 |
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2,029 |
by smlewis Mon, 2014-04-21 06:47 |
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Does a negative Rosetta dG imply a favorable process? by cossio » Tue, 2014-12-09 05:13 |
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4,133 |
by lanselibai Tue, 2014-12-16 10:48 |
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Documentation missing in MultiGraft by aroop » Thu, 2012-03-15 07:39 |
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2,661 |
by aroop Mon, 2014-04-21 06:47 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,025 |
by smlewis Mon, 2014-04-21 06:47 |
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DockingProtocol mover ensemble error by dfcoelho » Tue, 2018-10-16 08:32 |
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2,141 |
by brspurri Thu, 2020-08-20 13:22 |
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Docking with glutathione by phanvy » Wed, 2015-04-29 22:25 |
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1,778 |
by rmoretti Thu, 2015-04-30 07:13 |
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docking using rosetta3.1 and rosetta2.3 leads to very different results by lqzhang » Thu, 2010-01-14 11:54 |
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1,892 |
by sid Mon, 2014-04-21 06:47 |
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Docking tree issues by salvatta » Tue, 2018-07-17 05:57 |
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4,049 |
by salvatta Mon, 2018-09-10 10:04 |
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docking mover(s) in rosetta by aaj » Mon, 2016-01-25 02:38 |
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2,345 |
by aaj Mon, 2016-02-22 07:50 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
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659 |
by jadolfbr Sat, 2022-02-12 23:16 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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945 |
by fgomes Fri, 2019-11-22 19:12 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,377 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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Docking individual residue ussing RosettaDock by a-eatemadi@razi... » Wed, 2017-09-06 05:50 |
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1,457 |
by rmoretti Wed, 2017-09-06 08:47 |
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Docking failure by khanhbinh » Sun, 2012-09-23 22:19 |
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2,776 |
by khanhbinh Mon, 2014-04-21 06:47 |
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Docking double-stranded DNA to a protein by xpzhang » Tue, 2012-01-31 12:35 |
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8,238 |
by xpzhang Mon, 2014-04-21 06:47 |
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Docking an iron atom to a peptide by buzb » Wed, 2011-01-26 09:49 |
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12,708 |
by smlewis Mon, 2014-04-21 06:47 |
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Docking a protein into a symmetrical complex by saxen » Fri, 2011-04-08 22:24 |
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11,958 |
by saxen Mon, 2014-04-21 06:47 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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1,283 |
by rmoretti Thu, 2018-06-28 14:22 |
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Docking 2 proteins including ligands by einew » Tue, 2011-03-08 13:33 |
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3,222 |
by einew Mon, 2014-04-21 06:47 |
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Docking + Active Site Design by bharat_46010 » Sat, 2014-12-13 23:04 |
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7,565 |
by rmoretti Wed, 2015-01-21 08:43 |
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dock & design by sdh_h » Fri, 2016-09-02 03:07 |
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1,979 |
by rmoretti Mon, 2016-09-05 09:39 |
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Do Rosetta support hydroxide(OH-) and oxide(O2-) params? by dasdevashishdas » Thu, 2018-08-16 21:15 |
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1,840 |
by dasdevashishdas Thu, 2018-08-23 18:02 |
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dna_denovo by frits » Fri, 2013-07-12 06:12 |
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3,375 |
by frits Mon, 2014-04-21 06:48 |
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Divide larger low-res. global run into several smaller runs? by jasnyderjr » Mon, 2015-12-21 17:41 |
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1,738 |
by smlewis Tue, 2015-12-22 08:31 |
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Disulfidize mover by karenjgonzalez » Wed, 2019-07-31 12:35 |
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1,009 |
by karenjgonzalez Wed, 2019-07-31 12:35 |
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disulfide bridges in loop modeling by pledor » Fri, 2010-08-06 06:49 |
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2,839 |
by pledor Mon, 2014-04-21 06:47 |
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disulfide bonds using abinitio folding module by crfenollar » Wed, 2010-02-24 03:26 |
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11,945 |
by lanselibai Tue, 2015-02-10 14:03 |
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distances definition in course-grained (centroid mode) steps by allan.ferrari » Tue, 2017-01-03 05:15 |
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4,587 |
by allan.ferrari Tue, 2017-01-03 11:15 |
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distance contraints file by tricia » Wed, 2009-06-10 13:28 |
0 |
1,306 |
by tricia Mon, 2014-04-21 06:47 |
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Discarding atoms for fixbb by Jacob-kong » Tue, 2012-06-26 06:23 |
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4,814 |
by Jacob-kong Mon, 2014-04-21 06:47 |
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Difficulties with Protein Docking using Harmonic Restraints by Parker.deWaal » Fri, 2016-08-19 11:23 |
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1,570 |
by smlewis Mon, 2016-08-22 10:39 |
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Differentiable Energy Function w/ Centroid Representation by protein_fan » Sun, 2022-03-20 09:39 |
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973 |
by protein_fan Fri, 2022-04-15 17:41 |
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Different weights in the constraints for each stage of AbinitioRelax by allan.ferrari » Sun, 2017-01-15 04:35 |
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2,337 |
by smlewis Sun, 2017-01-15 18:10 |
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Different dG_separated from RAbD and InterfaceAnalyzer by brubin » Mon, 2022-12-19 13:58 |
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352 |
by brubin Tue, 2022-12-20 13:26 |
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Differences between energy values reported in the tutorials and the ones obtained by running the code, what is normal? by ericlang » Mon, 2021-07-05 05:43 |
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905 |
by ericlang Mon, 2021-07-05 06:59 |
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Difference between score and silent_score when silent files are combined by justin » Tue, 2012-01-03 06:44 |
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3,925 |
by justin Mon, 2014-04-21 06:47 |
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Difference between interface_delta_X and dG_separated? by Nicole Deng » Sat, 2020-06-06 06:31 |
0 |
895 |
by Nicole Deng Sat, 2020-06-06 06:40 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
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4,402 |
by rmoretti Sat, 2014-03-22 11:40 |
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dG_separated threshold for identifying non-binding peptides with InterfaceAnalyzer. by jyotisutar9 » Thu, 2016-12-01 00:39 |
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4,958 |
by jyotisutar9 Wed, 2016-12-14 09:39 |
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dG/dsasa , What is the exact meaning? by Apiwat » Sun, 2014-04-13 00:38 |
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3,806 |
by Apiwat Thu, 2014-04-17 09:56 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
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2,602 |
by smlewis Fri, 2014-02-28 05:45 |
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Determine the weights of score functions by SunH » Thu, 2010-09-02 07:20 |
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4,071 |
by smlewis Mon, 2014-04-21 06:47 |
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Designing Feasible Backbones by csvajda » Sat, 2022-08-13 08:08 |
0 |
270 |
by csvajda Sat, 2022-08-13 08:08 |
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DesignByCavityProximity: element not expected by karenjgonzalez » Tue, 2020-01-28 05:16 |
4 |
2,181 |
by karenjgonzalez Tue, 2020-02-11 08:44 |
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Design with non-canonical amino acids (NCAA) by yinasun » Mon, 2019-08-05 00:34 |
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1,970 |
by matteoferla Thu, 2019-08-22 05:39 |
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Design strategy - One chain at a time OR two chains together? by tlopes » Wed, 2022-01-05 18:19 |
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432 |
by tlopes Wed, 2022-01-05 18:19 |
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Design on NMR template by enoee » Wed, 2010-07-21 05:29 |
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1,695 |
by smlewis Mon, 2014-04-21 06:47 |
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Design constraints on pairs of residues by SenyorDrew » Mon, 2017-10-02 07:25 |
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2,746 |
by SenyorDrew Mon, 2017-11-13 11:44 |
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
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2,119 |
by smlewis Mon, 2014-04-21 06:47 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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1,177 |
by rmoretti Sat, 2019-03-30 12:10 |
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Denovo density excess map input and segmentation by ahmadkhalifa » Mon, 2018-04-30 07:28 |
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854 |
by ahmadkhalifa Fri, 2018-05-04 07:50 |
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Denovo density didn't output a structure by ahmadkhalifa » Mon, 2018-02-12 08:10 |
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2,372 |
by ylwang Wed, 2018-11-14 03:03 |
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Denovo density corrupted silent file by ahmadkhalifa » Mon, 2018-04-23 07:30 |
4 |
3,014 |
by ahmadkhalifa Thu, 2018-04-26 09:11 |
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demos/public/ideal_proteins Segmentation fault by coomteng@gmail.com » Wed, 2018-03-07 00:15 |
5 |
3,360 |
by rmoretti Thu, 2018-03-08 07:46 |
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demo documentation by lshi » Fri, 2009-08-28 08:51 |
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1,892 |
by smlewis Mon, 2014-04-21 06:47 |
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defining interface in interface analyzer by aa20 » Fri, 2013-09-27 11:08 |
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6,150 |
by smlewis Mon, 2014-04-21 06:48 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,446 |
by smlewis Mon, 2014-04-21 06:47 |
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Debugging Rosetta under XCode by sacch » Sun, 2011-10-16 18:23 |
8 |
7,433 |
by sacch Mon, 2014-04-21 06:47 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
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926 |
by rmoretti Tue, 2021-02-09 10:48 |
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de novo RNA loop by c.ocasion » Sun, 2021-02-14 18:34 |
5 |
2,042 |
by everyday847 Mon, 2021-03-29 20:19 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
2 |
1,174 |
by pci112 Thu, 2021-03-25 01:44 |
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De novo Protein Design by ac.research » Sat, 2017-07-15 10:39 |
5 |
7,455 |
by rmoretti Mon, 2017-08-14 09:06 |
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De novo density assembly weights don't add up to a 100 by ahmadkhalifa » Fri, 2018-08-03 12:07 |
3 |
2,043 |
by rmoretti Tue, 2019-10-22 07:05 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
2 |
1,520 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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De Novo backbone generation vs Rosetta Match for enzdes and ligand binding. by csvajda » Thu, 2022-06-30 09:55 |
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496 |
by csvajda Thu, 2022-06-30 16:26 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
0 |
1,393 |
by hltorresvera Tue, 2021-02-09 10:44 |
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ddG from backrub by jte » Tue, 2010-10-05 14:09 |
3 |
2,941 |
by smlewis Mon, 2014-04-21 06:47 |
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ddg energy components by japgar » Tue, 2010-07-13 13:20 |
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32,704 |
by smlewis Mon, 2014-04-21 06:47 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
2 |
1,367 |
by dfcoelho Wed, 2019-11-20 05:39 |
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ddg calculation by Lindsay » Thu, 2013-09-12 10:19 |
3 |
5,163 |
by Lindsay Mon, 2014-04-21 06:48 |
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ddG backbone movement by dave » Wed, 2012-10-03 03:23 |
2 |
2,738 |
by dave Mon, 2014-04-21 06:47 |
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ddG average energy by dave » Wed, 2013-04-03 03:36 |
1 |
2,220 |
by rmoretti Mon, 2014-04-21 06:47 |
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ddG = dGmutant ‐ dGwildtype by ela » Thu, 2018-07-26 09:17 |
3 |
2,940 |
by ela Thu, 2018-08-09 08:04 |
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Data Check for a newb by ac.research » Sun, 2017-03-12 23:42 |
2 |
2,026 |
by ac.research Fri, 2017-03-31 07:36 |
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Cyclizing .pdb of a linear chain. by jcminerlanl » Wed, 2017-07-05 23:56 |
3 |
2,641 |
by jcminerlanl Thu, 2017-07-06 09:22 |
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cutpoint error! by monos_morpheus » Thu, 2011-04-07 08:04 |
7 |
6,943 |
by monos_morpheus Mon, 2014-04-21 06:47 |
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Custom fold tree by lah435 » Tue, 2015-03-03 12:02 |
1 |
1,806 |
by rmoretti Mon, 2015-03-30 16:38 |
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Cterm_amidation by G Mustafa » Wed, 2021-11-03 08:52 |
1 |
729 |
by gezmi Sat, 2021-11-06 15:26 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
1 |
2,479 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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CryoEM model refinement with covalent conjugated prosthetic Phosphopantetheine carrying acyl group by ZhijunW » Thu, 2020-09-03 18:36 |
11 |
4,548 |
by matteoferla Sat, 2020-09-12 03:02 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
0 |
1,550 |
by Karol Mon, 2016-08-29 05:27 |
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