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Question about FlexPepDock score by aelatico » Thu, 2018-07-19 20:39 |
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1,148 |
by rmoretti Wed, 2018-08-01 16:04 |
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error in mol2 to params conversion for GAliganddocking by jalan » Wed, 2020-04-22 06:08 |
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1,146 |
by jalan Thu, 2020-04-23 05:19 |
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Multi-state design with the error "unable to locate database file" by yifeili1983 » Sun, 2019-03-31 18:30 |
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1,144 |
by rmoretti Wed, 2019-04-03 09:31 |
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The question about FavorNativeResidue by asbelx » Fri, 2019-04-12 20:02 |
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1,139 |
by rmoretti Tue, 2019-07-09 15:57 |
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Add a ligand with only one atom (i.e. Zn) to the RosettaCM by lanselibai » Tue, 2021-06-22 10:28 |
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1,139 |
by rmoretti Thu, 2021-06-24 12:23 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
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1,135 |
by albumns Mon, 2014-04-21 06:47 |
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multi state protein design by rohi » Fri, 2020-09-04 08:14 |
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1,126 |
by rmoretti Tue, 2021-02-09 13:45 |
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SNUGDOCK by adva » Sun, 2017-07-16 00:49 |
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1,124 |
by jeliazkov Tue, 2017-07-18 09:51 |
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ab initio struction prediction by Negarsardar » Mon, 2018-08-06 15:50 |
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1,122 |
by smlewis Tue, 2018-08-07 16:59 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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1,121 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Rosetta script to relax a neighborhood only by matteoferla » Mon, 2018-10-29 03:34 |
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1,121 |
by jadolfbr Fri, 2018-11-09 09:17 |
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Icouldnot find DDMI protocol for design protein by ladimafakher » Mon, 2018-02-12 09:22 |
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1,120 |
by rmoretti Mon, 2018-02-12 09:39 |
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4mer 6mer fragment database by bjharris » Wed, 2020-09-09 15:12 |
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1,111 |
by bjharris Wed, 2020-09-09 20:04 |
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De novo backbone trace from fragments by Victor Tobiasson » Tue, 2020-12-22 06:34 |
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1,111 |
by Victor Tobiasson Tue, 2020-12-22 09:18 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
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1,109 |
by Loki01 Wed, 2017-12-13 05:27 |
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hbnet by mintseris » Mon, 2018-03-19 09:02 |
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1,108 |
by rmoretti Mon, 2018-03-19 09:08 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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1,101 |
by rmoretti Wed, 2018-11-21 14:14 |
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adding NCAA to the N-terminal of RCSB pdb by ate » Tue, 2021-06-08 08:24 |
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1,101 |
by Subhrodeep Saha Sat, 2021-06-19 07:17 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,099 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Ab Initio large threshold for clustering by Swillard » Mon, 2018-11-12 14:14 |
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1,098 |
by rmoretti Wed, 2018-11-21 14:01 |
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Working through tutorials: expected output scorces differ from calculated results by j.schmue » Sat, 2020-01-18 13:16 |
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1,096 |
by j.schmue Tue, 2020-01-28 13:31 |
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str::out_of_range with mpiexec and relax by pedro.guillem » Fri, 2020-06-19 10:39 |
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1,093 |
by pedro.guillem Wed, 2020-06-24 04:49 |
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error in ligand docking by rohi » Fri, 2020-11-13 10:52 |
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1,078 |
by rmoretti Fri, 2020-11-13 12:58 |
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RosettaCM: adding constraints while keeping AUTO constraints by Michele.Bonus » Sun, 2020-08-30 10:42 |
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1,078 |
by Michele.Bonus Sun, 2020-08-30 23:06 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,075 |
by rmoretti Mon, 2017-08-21 09:55 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,060 |
by ac.research Sat, 2017-11-18 06:54 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,059 |
by rmoretti Mon, 2019-07-08 08:05 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,051 |
by jadolfbr Thu, 2019-08-29 14:29 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,051 |
by rmoretti Tue, 2019-07-09 15:48 |
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Docking a ligand to two movable domains of a protein by brspurri » Wed, 2018-05-16 08:27 |
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1,049 |
by rmoretti Thu, 2018-06-28 14:22 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,042 |
by fmerino Mon, 2017-10-16 04:02 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,042 |
by sayan500 Tue, 2019-07-30 22:20 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,031 |
by a.book Wed, 2018-10-03 15:56 |
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Questions regarding fragmentation using Robetta by ahmadkhalifa » Thu, 2018-06-28 13:24 |
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1,028 |
by smlewis Thu, 2018-06-28 13:34 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
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1,026 |
by rmoretti Mon, 2018-10-08 11:20 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
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1,022 |
by rmoretti Mon, 2019-08-26 15:01 |
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where is PyIgClassfiy.py ? by mxp » Tue, 2020-07-07 23:57 |
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1,021 |
by mxp Wed, 2020-07-08 23:25 |
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Relax output mmCIF file to a particular path by AJVincelli » Sun, 2018-11-25 11:04 |
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1,018 |
by AJVincelli Sun, 2018-11-25 11:09 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
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1,018 |
by rmoretti Thu, 2018-02-22 09:29 |
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Ddg calculation for a metalloprotein using APBS by dfcoelho » Tue, 2019-11-19 10:06 |
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1,017 |
by dfcoelho Wed, 2019-11-20 05:39 |
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Controlling Input in the Tutorial by Smbat » Wed, 2020-07-29 22:41 |
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1,010 |
by Smbat Thu, 2020-07-30 03:07 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
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1,009 |
by matteoferla Sat, 2020-05-23 03:09 |
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intrensic disrodered proteins by ac.research » Thu, 2019-04-04 07:20 |
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1,008 |
by vmulligan Mon, 2019-04-08 14:49 |
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Molfile to Params File Issue by jferrie » Mon, 2018-04-23 15:25 |
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1,004 |
by jferrie Mon, 2018-04-23 15:25 |
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clean_pdb.py by duz » Wed, 2021-03-24 13:36 |
2 |
1,001 |
by duz Thu, 2021-04-01 09:34 |
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MPI optimization on TACC stampede2 HPC by rlwoltz » Tue, 2021-03-16 18:07 |
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1,000 |
by rlwoltz Wed, 2021-03-24 22:36 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
1 |
1,000 |
by vmulligan Sat, 2020-04-11 17:40 |
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LHOC script problem in Rosetta Antibody by ziheng@mit.edu » Thu, 2019-04-25 14:19 |
1 |
998 |
by ziheng@mit.edu Thu, 2019-04-25 14:31 |
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AbinitioRelax of RCSB PDB structures by ac.research » Tue, 2019-09-03 02:35 |
1 |
998 |
by danpf Tue, 2019-09-03 10:39 |
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Structure-sequence alignment generation with selected PDB how? by nzsuzsanna » Tue, 2016-05-10 07:39 |
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996 |
by nzsuzsanna Tue, 2016-05-10 07:39 |
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MakeRotLib by yinasun » Sun, 2019-07-28 20:08 |
1 |
995 |
by rmoretti Mon, 2019-08-26 15:00 |
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analyzing the protein protein docking without native structure by rohi » Sun, 2020-10-11 20:42 |
2 |
995 |
by rohi Tue, 2020-10-13 09:15 |
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Rosetta params for taxol by ahmadkhalifa » Sat, 2019-03-30 22:37 |
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982 |
by rmoretti Wed, 2019-04-03 10:03 |
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Extracting PDBs from a Silent file: "Can't find residue type for ARG" by avsrivatsa » Sat, 2020-10-17 16:20 |
2 |
982 |
by avsrivatsa Mon, 2020-10-19 18:16 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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975 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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RosettaRemodel gives no increased output when setting higher -num_trajectory by JW_24 » Tue, 2020-09-22 11:49 |
2 |
971 |
by JW_24 Wed, 2020-09-23 01:27 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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969 |
by jkleman Thu, 2020-01-16 11:05 |
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MotifGraft error: "Residue connection id changed when creating a new residue at seqpos" by dfcoelho » Mon, 2020-02-03 11:09 |
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965 |
by dfcoelho Tue, 2020-02-04 07:45 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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965 |
by rmoretti Wed, 2019-09-18 10:49 |
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Rosetta Antibody cuts off light chain? by ziheng@mit.edu » Thu, 2019-05-02 15:17 |
1 |
964 |
by jeliazkov Fri, 2019-05-03 07:00 |
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running Rosetta with MPI by rohi » Sat, 2020-09-05 16:06 |
1 |
964 |
by rmoretti Tue, 2021-02-09 13:44 |
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Ligand question - aromatic bonds not being enforced? by Rick_Baker » Wed, 2019-09-11 09:08 |
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951 |
by Rick_Baker Wed, 2019-09-11 15:35 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
0 |
948 |
by Jhreed Fri, 2016-07-08 13:44 |
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Rotate chain by Germanico » Sun, 2021-05-09 16:36 |
3 |
939 |
by danpf Mon, 2021-05-10 10:04 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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931 |
by connyyu Thu, 2019-04-18 03:26 |
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Mutations are ignored (fixbb) when using -auto_setup_metals option by hdelrisco » Wed, 2019-06-19 15:43 |
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930 |
by smlewis Fri, 2019-06-28 13:56 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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924 |
by rmoretti Sat, 2019-03-30 12:10 |
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ERROR: Not complementary at positions by szcshr123 » Fri, 2021-02-26 05:58 |
2 |
911 |
by szcshr123 Fri, 2021-02-26 14:41 |
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Is there other online server for generate fragment? by ylwang » Wed, 2020-04-01 01:39 |
1 |
911 |
by rmoretti Wed, 2020-04-01 10:10 |
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Running RosettaScripts, but got an error "src/utility/options/OptionCollection.cc, line 1153, No values of the appropriate type" by zhoubin » Sun, 2021-02-28 08:51 |
3 |
910 |
by zhoubin Mon, 2021-03-01 22:11 |
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small molecule charge generated by molfile_to_params.py by rohi » Wed, 2021-03-17 09:35 |
3 |
906 |
by rmoretti Wed, 2021-03-17 13:52 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
1 |
906 |
by rmoretti Tue, 2019-07-09 15:59 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
1 |
904 |
by matteoferla Tue, 2020-06-23 10:58 |
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File specification of binary part of silent file (especially PDB section) by m.ebert » Wed, 2019-05-29 01:52 |
1 |
901 |
by smlewis Wed, 2019-05-29 13:21 |
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ddG of multiple mutations on a monomer by hltorresvera » Mon, 2021-02-01 16:54 |
0 |
898 |
by hltorresvera Tue, 2021-02-09 10:44 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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895 |
by renedominik Wed, 2020-02-12 06:16 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
0 |
892 |
by wentlewi Sat, 2020-05-16 08:06 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
892 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Unable to create col_complex.pdb file by sayan500 » Tue, 2019-07-30 22:08 |
1 |
881 |
by rmoretti Mon, 2019-08-26 14:52 |
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Rosetta changing Atom Name in PDB ATOM record? by chrisHKL » Tue, 2020-03-03 20:50 |
1 |
881 |
by smlewis Wed, 2020-03-04 07:40 |
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solution of the length of peptide candidates is larger than substrate with FlexPepDock and Flexpepbind by ziqi1234 » Thu, 2018-05-24 02:18 |
0 |
879 |
by ziqi1234 Thu, 2018-05-24 02:18 |
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Error in Hybridize of Rosetta Comparative Modeling. by Ivan » Fri, 2019-11-01 07:46 |
1 |
870 |
by rmoretti Mon, 2019-11-04 12:54 |
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Issues with angle Constraints during Docking by LeonhardJS » Thu, 2021-01-28 04:40 |
2 |
861 |
by LeonhardJS Fri, 2021-01-29 01:12 |
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What is the best protocol to predict the missing residues in X-ray crystallisation? by lanselibai » Sun, 2019-12-29 04:44 |
1 |
854 |
by matteoferla Wed, 2020-01-01 04:30 |
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error running "helix_preassemble_setup.py" by zahra_AZ » Tue, 2020-11-03 01:54 |
1 |
854 |
by rmoretti Tue, 2021-02-09 12:19 |
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Setting output values using a database (with relax app) by pedro.guillem » Thu, 2020-05-14 04:33 |
1 |
852 |
by pedro.guillem Wed, 2020-06-24 04:41 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
1 |
849 |
by matteoferla Sat, 2020-06-20 03:56 |
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Gaussian Constraint For Dihedrals by jinli711 » Thu, 2020-07-23 10:47 |
1 |
847 |
by matteoferla Fri, 2020-07-24 03:06 |
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de novo protein prediction by pci112 » Tue, 2021-03-23 10:13 |
2 |
845 |
by pci112 Thu, 2021-03-25 01:44 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
1 |
837 |
by sheehajh Fri, 2020-02-21 12:41 |
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use_truncated_termini not working in combination with params files by georg » Thu, 2020-03-26 13:14 |
1 |
837 |
by matteoferla Tue, 2020-04-14 03:36 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
1 |
827 |
by vmulligan Mon, 2020-06-29 13:09 |
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Ligand being read as part of protein structure by MarkusAurelius » Thu, 2021-04-01 11:00 |
2 |
819 |
by MarkusAurelius Fri, 2021-04-02 11:44 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
1 |
818 |
by amelie.stein Mon, 2020-09-28 10:41 |
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Help with filtering (Rosetta scripts) by wentlewi » Sat, 2020-10-24 10:12 |
1 |
817 |
by rmoretti Tue, 2021-02-09 12:35 |
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Score function: unable to open input_files/1qys.pdb by Cyrrusm » Tue, 2020-10-13 11:35 |
1 |
817 |
by rmoretti Tue, 2020-10-13 11:40 |
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reading of AtomPair failed in relax with constraint by hajar » Wed, 2020-06-10 10:02 |
0 |
814 |
by hajar Wed, 2020-06-10 11:17 |
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computing Pnear for Rosetta ligand docking by rohi » Mon, 2021-02-01 08:27 |
1 |
810 |
by rmoretti Tue, 2021-02-09 09:37 |
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constraint are not imposed during protein-ligand docking by rohi » Wed, 2020-12-02 11:28 |
1 |
805 |
by rmoretti Tue, 2021-02-09 12:02 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
0 |
801 |
by ela Fri, 2018-08-31 02:53 |
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