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Rosetta 3 - General
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How to site the scoring application in rosetta3.1? by doranhen » Thu, 2012-07-05 10:07 |
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2,477 |
by smlewis Mon, 2014-04-21 06:47 |
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fragment_picker error secondarysimilarity.cc line:132 by leanawen » Mon, 2013-04-15 14:33 |
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2,163 |
by smlewis Mon, 2014-04-21 06:47 |
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Is there a way to calculate chi1 and chi1+chi differences between two structures? by sn » Thu, 2017-04-20 21:46 |
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2,106 |
by rmoretti Fri, 2017-04-21 07:52 |
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Sequence symmetry during FastDesign for repeat protein design by cttm4a1 » Tue, 2022-09-06 21:02 |
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718 |
by rmoretti Wed, 2022-09-07 09:19 |
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have trouble with "relax" models by wszjzhang » Thu, 2010-01-28 10:02 |
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2,145 |
by smlewis Mon, 2014-04-21 06:47 |
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Structure prediction based on template -> Documentation comparative modeling of protein structures by maxebert » Sun, 2011-03-20 01:15 |
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3,192 |
by rmoretti Mon, 2014-04-21 06:47 |
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tyrosine structure error by dave » Mon, 2012-04-30 04:38 |
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2,196 |
by frichter Mon, 2014-04-21 06:47 |
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Reproducing Robetta AB initio setup by jason-rosetta » Sat, 2014-10-04 04:26 |
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2,354 |
by jadolfbr Fri, 2014-10-31 08:55 |
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Structure refinement with RDC constraint by shushunur » Thu, 2018-01-18 00:44 |
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2,246 |
by rmoretti Tue, 2018-01-30 09:08 |
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Program frozen at "protocols.jobdist.JobDistributors: (0) Master Node -- Waiting for job request; tag_ = 1" by Xinhang » Sat, 2020-04-11 14:30 |
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1,709 |
by vmulligan Sat, 2020-04-11 17:40 |
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I Need Help on Validation for a Ligand Docking Experiment. by tbelec » Sat, 2021-03-20 13:27 |
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1,656 |
by matteoferla Mon, 2021-03-22 08:29 |
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ddg energy components by japgar » Tue, 2010-07-13 13:20 |
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32,973 |
by smlewis Mon, 2014-04-21 06:47 |
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How to get fragment library from robetta server for mre than 1000 residue sequence? by Danielsebas » Wed, 2019-09-18 07:53 |
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1,534 |
by rmoretti Wed, 2019-09-18 10:49 |
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protein design for increasing its affinity towards ligand by rohi » Fri, 2020-10-30 11:33 |
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1,394 |
by rmoretti Tue, 2021-02-09 12:25 |
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Multi-metric enzyme docking with substrate by Wang Zhe » Sat, 2021-11-20 04:41 |
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1,091 |
by matteoferla Mon, 2021-12-13 02:27 |
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Structure Prediction of protein mutant using relax by Delfosse57 » Tue, 2023-01-10 13:26 |
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649 |
by JW_24 Tue, 2023-01-24 04:55 |
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error in cluster running by albumns » Mon, 2011-09-05 00:24 |
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2,576 |
by rmoretti Mon, 2014-04-21 06:47 |
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Error in Running Symmetry Docking cutpoint. by Jacob » Wed, 2011-06-01 08:21 |
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2,347 |
by smlewis Mon, 2014-04-21 06:47 |
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Difference between checkpoint file and PSSM for making fragments by qlj » Fri, 2014-03-21 22:00 |
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4,798 |
by rmoretti Sat, 2014-03-22 11:40 |
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ligand flexibility by dave » Thu, 2015-02-12 08:48 |
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2,219 |
by rmoretti Wed, 2015-02-18 09:17 |
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Problem with match on enzdes by ahuls1 » Thu, 2021-07-29 13:21 |
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1,220 |
by ahuls1 Thu, 2021-07-29 13:23 |
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unit and scientific tests by tricia » Sat, 2009-05-09 23:29 |
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2,133 |
by smlewis Mon, 2014-04-21 06:47 |
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Compilation in Mac OS 10.6 by rjn » Thu, 2010-02-18 12:35 |
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2,264 |
by smlewis Mon, 2014-04-21 06:47 |
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Knowledge check on steric effects by pachecoj » Thu, 2014-10-16 09:13 |
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2,398 |
by rmoretti Thu, 2014-10-16 10:33 |
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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2,013 |
by smlewis Sun, 2016-01-10 10:02 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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1,273 |
by taylorjones Mon, 2021-04-05 13:17 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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2,366 |
by rmoretti Tue, 2014-07-01 12:21 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,685 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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2,219 |
by jkleman Tue, 2018-07-31 13:19 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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1,460 |
by dgront Thu, 2021-02-11 08:30 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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6,236 |
by rmoretti Tue, 2014-07-01 12:45 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,630 |
by ac.research Sat, 2017-11-18 06:54 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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1,551 |
by jkleman Thu, 2020-01-16 11:05 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
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5,524 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
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2,914 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,582 |
by rmoretti Mon, 2017-08-21 09:55 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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1,343 |
by amelie.stein Mon, 2020-09-28 10:41 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,516 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,904 |
by jadolfbr Fri, 2016-02-05 15:32 |
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Applying dihedral constraints to TRP dipeptide minimization. ACE/NME termni. by reoverstreet » Mon, 2022-07-11 14:39 |
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864 |
by matteoferla Wed, 2022-07-20 10:33 |
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unidentifiable C++ exception in both linux and window. by wajidarshad » Tue, 2015-10-27 08:12 |
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2,021 |
by rmoretti Tue, 2015-10-27 08:46 |
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Error in src/protocols/membrane/util.cc line: 1224 by renedominik » Tue, 2020-02-11 08:10 |
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1,441 |
by renedominik Wed, 2020-02-12 06:16 |
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NMR / NOE related tools in 3.2 ? by smg3d » Sun, 2011-02-06 06:11 |
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2,307 |
by smlewis Mon, 2014-04-21 06:47 |
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secondary structure prediction for generation of fragment libraries by xpzhang » Sat, 2011-06-25 00:47 |
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3,570 |
by smlewis Mon, 2014-04-21 06:47 |
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missing amino acid by berk » Fri, 2013-06-14 06:07 |
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2,002 |
by smlewis Mon, 2014-04-21 06:48 |
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Computing pairwise energies for rotamers by pachecoj » Sat, 2014-05-03 17:52 |
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2,220 |
by rmoretti Mon, 2014-05-12 07:50 |
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Output fasta of enzdes generated pdbs by eyong123 » Tue, 2015-05-19 08:07 |
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2,276 |
by rmoretti Mon, 2015-05-25 11:07 |
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multiple symmetry definition files by sdh_h » Wed, 2016-06-29 09:31 |
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1,894 |
by rmoretti Wed, 2016-06-29 10:20 |
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Fixing certain residues during refinement by ckdenist » Thu, 2019-08-29 14:00 |
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1,797 |
by jadolfbr Thu, 2019-08-29 14:29 |
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decoy vs pose by Anonymous » Fri, 2012-06-15 02:46 |
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2,750 |
by smlewis Mon, 2014-04-21 06:47 |
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patch file modification for ser_phosphorylated.txt by hajar » Sun, 2020-06-21 00:49 |
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1,693 |
by matteoferla Tue, 2020-06-23 10:58 |
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ERROR: Your compiler does not have full support for C++11 regex, and therefore can't support RegEx_based_CDR_Detector/antibody g by yliang20 » Mon, 2022-08-08 16:59 |
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1,011 |
by rmoretti Tue, 2022-08-09 06:52 |
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Version of VALL Database and Corresponding Constraint Coordinate File for Fragment Generation by jurkm » Mon, 2011-05-02 03:00 |
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3,256 |
by smlewis Mon, 2014-04-21 06:47 |
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Combine flags file with command line arguments? by cossio » Mon, 2014-12-22 13:52 |
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3,267 |
by smlewis Tue, 2014-12-23 13:58 |
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can not find a residue type that matches the residue HIS_P:NtermProteinFull by tarsis » Wed, 2017-04-05 08:51 |
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2,711 |
by rmoretti Fri, 2017-04-14 08:37 |
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Segmentation fault (core dumped) denovo_density.linuxgccrelease by ahmadkhalifa » Sun, 2018-04-15 17:52 |
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2,036 |
by smlewis Mon, 2018-04-16 16:32 |
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How to determine the value size in block of *.cst files? by weifulei » Sun, 2019-05-05 19:56 |
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1,684 |
by rmoretti Tue, 2019-07-09 15:48 |
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Using specific rotamers by sahn97 » Fri, 2022-08-26 13:45 |
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759 |
by rmoretti Fri, 2022-08-26 14:51 |
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dock_mcm not found by libai2098 » Mon, 2011-03-14 00:02 |
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2,256 |
by smlewis Mon, 2014-04-21 06:47 |
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Recommendations for CoupledMoves enzyme redesign by dgm3 » Thu, 2021-03-04 10:53 |
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1,343 |
by aloshbau Tue, 2021-03-09 02:47 |
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Rosetta Dock by swoody » Tue, 2009-11-10 16:20 |
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3,006 |
by smlewis Mon, 2014-04-21 06:47 |
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could ab initio support running mpi? by albumns » Mon, 2010-07-05 01:13 |
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2,695 |
by smlewis Mon, 2014-04-21 06:47 |
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How to design a stand-alone loop from a binding interface? by guangdianzi3 » Fri, 2011-02-11 21:11 |
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2,212 |
by smlewis Mon, 2014-04-21 06:47 |
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make_fragments.pl without sparks by nannemdp » Mon, 2014-06-09 13:18 |
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2,266 |
by rmoretti Tue, 2014-06-10 11:34 |
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demo documentation by lshi » Fri, 2009-08-28 08:51 |
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2,179 |
by smlewis Mon, 2014-04-21 06:47 |
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Determining Rosetta version from directory by linucks » Fri, 2014-02-28 04:04 |
1 |
3,038 |
by smlewis Fri, 2014-02-28 05:45 |
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optimisation of a protein-protein interface by sdh_h » Thu, 2017-05-04 05:06 |
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2,207 |
by rmoretti Mon, 2017-05-15 09:03 |
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clean_pdb_keep_ligand.py IndexError by to-qinbin@163.com » Sat, 2022-09-10 04:04 |
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819 |
by rmoretti Mon, 2022-09-12 06:58 |
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Getting started with Rosetta by myang » Tue, 2009-04-07 16:25 |
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2,612 |
by smlewis Mon, 2014-04-21 06:47 |
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RosettaHoles in 3.1 by enoee » Thu, 2010-10-14 07:12 |
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2,442 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem in 3D structure building of ss DNA aptamer by irshadbaig » Sun, 2013-11-17 20:15 |
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4,058 |
by rmoretti Mon, 2014-04-21 06:48 |
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I made a RDKit Chem.Mol to params converter — feedback welcome! by matteoferla » Sun, 2020-05-03 10:14 |
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1,815 |
by jadolfbr Sun, 2020-05-03 19:38 |
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Generate template parameter file for a polymer by anarob » Fri, 2022-06-10 11:05 |
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747 |
by matteoferla Fri, 2022-06-17 10:38 |
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combine silent.out file by venkatazb » Fri, 2016-07-22 05:22 |
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3,540 |
by smlewis Fri, 2016-07-22 07:31 |
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Rosetta structure refinement alters bound ligand by ahmadkhalifa » Mon, 2018-07-23 07:49 |
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2,017 |
by rmoretti Fri, 2018-08-03 08:59 |
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Structural Similarity by Soler » Mon, 2021-11-29 22:02 |
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1,068 |
by rmoretti Tue, 2021-11-30 07:41 |
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ERROR - PDB's with occupancy field equal '1.0' by khanhbinh » Sun, 2012-09-23 09:38 |
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2,324 |
by rmoretti Mon, 2014-04-21 06:47 |
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rebuilding and refinement by exchhattu » Tue, 2009-10-06 21:13 |
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2,125 |
by smlewis Mon, 2014-04-21 06:47 |
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total score by score » Mon, 2010-05-03 02:03 |
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2,359 |
by smlewis Mon, 2014-04-21 06:47 |
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protein-protien docking with uniform trans by lkingsle » Thu, 2012-02-09 07:19 |
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2,678 |
by mpacella Mon, 2014-04-21 06:47 |
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scorefunction Talaris2013 by dave » Tue, 2015-03-03 02:13 |
1 |
2,442 |
by rmoretti Thu, 2015-04-02 12:52 |
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TEST - who got this email? by smlewis » Mon, 2016-05-23 17:24 |
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1,828 |
by rmoretti Tue, 2016-07-12 08:48 |
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MakeRotLib by yinasun » Fri, 2019-07-26 02:20 |
1 |
1,631 |
by rmoretti Mon, 2019-08-26 15:01 |
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backrub and design by jtmacd » Thu, 2009-06-04 08:44 |
1 |
2,265 |
by jtmacd Mon, 2014-04-21 06:47 |
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How to specify a specific rotamer by Lior_UCSF » Wed, 2018-02-21 20:35 |
1 |
1,577 |
by rmoretti Thu, 2018-02-22 09:29 |
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Error in molfile_to_params_polymer.py for NCAA by kkuo33 » Mon, 2020-05-18 16:41 |
1 |
1,719 |
by matteoferla Sat, 2020-05-23 03:09 |
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Clustering problem by Suuo » Tue, 2021-04-20 01:40 |
1 |
1,208 |
by rmoretti Tue, 2021-04-20 13:06 |
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dealing with Large ligand in Ligand docking and enzyme design by rohi » Mon, 2021-01-04 09:58 |
1 |
1,234 |
by rmoretti Tue, 2021-02-09 10:48 |
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Docking mover by Soler » Sat, 2022-02-12 20:48 |
1 |
964 |
by jadolfbr Sat, 2022-02-12 23:16 |
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Rosetta remodelling - how to change the added residue type instead of just VAL by xuezhi » Wed, 2023-02-15 14:00 |
0 |
418 |
by xuezhi Wed, 2023-02-15 14:00 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
0 |
2,496 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
0 |
812 |
by cryosky Sun, 2021-09-26 13:24 |
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Interface scores comparison by NingNing » Tue, 2022-08-09 17:36 |
0 |
496 |
by NingNing Tue, 2022-08-09 17:36 |
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Error when running AqueousPoreFinder protocol by mluengo » Mon, 2023-12-11 02:55 |
0 |
261 |
by mluengo Mon, 2023-12-11 03:13 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
0 |
1,070 |
by matteoferla Fri, 2021-02-26 07:12 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
0 |
1,507 |
by albumns Mon, 2014-04-21 06:47 |
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Loop modeling by Robertofg » Tue, 2022-11-22 00:34 |
0 |
581 |
by Robertofg Tue, 2022-11-22 00:34 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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1,299 |
by Jhreed Fri, 2016-07-08 13:44 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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907 |
by matteoferla Wed, 2020-07-22 03:08 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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1,298 |
by matteoferla Fri, 2020-04-10 02:40 |
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