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positive results in total_score by symmetry docking by Jacob » Thu, 2011-06-16 05:18 |
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3,103 |
by rmoretti Mon, 2014-04-21 06:47 |
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CS-Rosetta fragments by isengupta13 » Sun, 2010-05-16 08:08 |
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2,407 |
by AndrewBworth Mon, 2014-04-21 06:47 |
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Pair potential by jadolfbr » Thu, 2011-12-08 08:06 |
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2,376 |
by smlewis Mon, 2014-04-21 06:47 |
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Dumb question: Rosetta 3 vs Rosetta++, what's the difference? by mintseris » Tue, 2013-12-31 13:03 |
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2,226 |
by rmoretti Mon, 2014-04-21 06:48 |
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Running the Matcher on multiple PDBs by Jhreed » Thu, 2016-02-18 08:50 |
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1,741 |
by rmoretti Sun, 2016-02-21 06:38 |
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[dev] not seeing energy in pose row for new energy term in design by ipetrik_ambry » Fri, 2017-03-03 13:16 |
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1,658 |
by ipetrik_ambry Tue, 2017-03-14 14:09 |
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Denovo prediction from multiple fragment lengths by ahmadkhalifa » Sun, 2019-03-24 03:55 |
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1,088 |
by rmoretti Sat, 2019-03-30 12:10 |
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Ligand docking: how to generate the crystal_complex.pdb with hydrogens added by nhinguyen26 » Wed, 2020-06-17 15:03 |
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1,028 |
by matteoferla Sat, 2020-06-20 03:56 |
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FastRelax Mover with symmetry, ligand and membrane by Michele.Bonus » Wed, 2021-05-26 04:43 |
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975 |
by matteoferla Thu, 2021-06-03 08:24 |
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Ensemble Docking with RosettaDock 4.0 Protocol by mb0261 » Wed, 2022-07-27 07:00 |
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369 |
by mb0261 Mon, 2022-09-26 07:50 |
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ratio of conformers and docking output by pramod » Fri, 2014-12-12 12:54 |
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1,965 |
by rmoretti Mon, 2014-12-15 02:37 |
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setup_run error with multiple resonance lists by aep » Fri, 2016-03-18 13:36 |
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1,768 |
by rmoretti Thu, 2016-04-28 15:49 |
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problems with implementing NOE constraints by connyyu » Thu, 2019-04-11 12:37 |
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1,117 |
by connyyu Thu, 2019-04-18 03:26 |
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simple_cycpep_predict issue modifying terminal residue by JEaston » Thu, 2020-06-25 13:15 |
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1,000 |
by vmulligan Mon, 2020-06-29 13:09 |
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Internal error while running AbinitioRelax by Subhrodeep Saha » Sun, 2021-06-13 03:44 |
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765 |
by rmoretti Wed, 2021-06-23 02:17 |
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Available of some protocals mentioned in publications by SunH » Mon, 2013-09-09 20:47 |
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1,806 |
by rmoretti Mon, 2014-04-21 06:48 |
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Error when using next-gen KIC (Signal 6) by janwp » Tue, 2014-08-26 08:36 |
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2,542 |
by amelie Tue, 2014-09-30 14:29 |
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Can I use next generation KIC with fragments? by Loki01 » Thu, 2017-12-07 06:19 |
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1,267 |
by Loki01 Wed, 2017-12-13 05:27 |
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Params file for Methane by dasdevashishdas » Sun, 2018-10-07 21:34 |
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1,188 |
by rmoretti Mon, 2018-10-08 11:20 |
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Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)? by thaisarns » Fri, 2020-02-21 05:46 |
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992 |
by sheehajh Fri, 2020-02-21 12:41 |
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Residue outside res_map range by amcallister » Fri, 2022-04-22 11:26 |
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367 |
by aneeqh Fri, 2022-09-02 13:36 |
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idealization error by albumns » Mon, 2011-02-07 01:28 |
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1,843 |
by smlewis Mon, 2014-04-21 06:47 |
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Interpreting decoy ensemble by lah435 » Wed, 2015-06-10 10:25 |
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1,662 |
by rmoretti Fri, 2015-07-03 13:51 |
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general question about protein docking by albumns » Mon, 2010-12-13 23:26 |
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2,184 |
by JeffreyGray Mon, 2014-04-21 06:47 |
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Generate full symmetric assembly from subsystem by lj269 » Thu, 2011-04-28 20:04 |
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2,110 |
by IAndre Mon, 2014-04-21 06:47 |
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About generating Fullatom structures by wszjzhang » Wed, 2010-03-24 19:27 |
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1,789 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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ERROR: Unable to open weights. by libai2098 » Thu, 2010-12-30 17:54 |
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1,873 |
by smlewis Mon, 2014-04-21 06:47 |
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Rosetta movie. by exchhattu » Mon, 2009-09-14 21:02 |
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1,988 |
by smlewis Mon, 2014-04-21 06:47 |
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How do the homology sequences exclude from fragment files? by exchhattu » Mon, 2010-04-05 03:04 |
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1,770 |
by smlewis Mon, 2014-04-21 06:47 |
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Need help with compilation (How to test if compilation is sucessful) by greenfur » Fri, 2012-06-29 12:29 |
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2,715 |
by smlewis Mon, 2014-04-21 06:47 |
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pdb 2 silent with ss information by kalabharath » Sun, 2013-04-14 20:59 |
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2,103 |
by smlewis Mon, 2014-04-21 06:47 |
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non-canonical residues parametrisation by DmitriiN » Tue, 2016-04-05 02:37 |
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1,701 |
by rmoretti Fri, 2016-04-08 08:43 |
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Library of unnatural amino acid parameters by saxen » Mon, 2017-04-17 11:08 |
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3,240 |
by smlewis Tue, 2017-04-18 08:33 |
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How to provide multiple templates for Robetta with RosettaCM option? by lanselibai » Wed, 2021-06-23 14:06 |
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655 |
by lanselibai Wed, 2021-06-23 14:53 |
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PDB weird to PDB rosetta friendly by jpfuenzalidawx » Fri, 2022-09-02 04:43 |
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200 |
by rmoretti Tue, 2022-09-06 08:13 |
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null rosetta energy/score by fred » Tue, 2011-10-18 10:31 |
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1,875 |
by fred Mon, 2014-04-21 06:47 |
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Derivative of the Energy function? by MkM » Fri, 2010-01-15 08:00 |
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2,059 |
by smlewis Mon, 2014-04-21 06:47 |
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which modules support MPI now? by albumns » Fri, 2013-11-08 01:32 |
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1,855 |
by rmoretti Mon, 2014-04-21 06:48 |
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Consistent XYZvector length() zero failure in EnzDes by mwfranklin » Thu, 2018-11-01 12:44 |
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1,295 |
by rmoretti Wed, 2018-11-21 14:14 |
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ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf) by Ken » Mon, 2022-05-23 07:16 |
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392 |
by ajasja Mon, 2022-05-23 07:19 |
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location of define_interface.py by rohi » Mon, 2020-10-26 19:42 |
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1,005 |
by rmoretti Mon, 2020-10-26 19:52 |
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Pairwise decomposable terms in the Rosetta energy function by pgainza » Wed, 2011-08-03 12:26 |
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3,153 |
by rmoretti Mon, 2014-04-21 06:47 |
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snugdock and rosetta 3.2?? by sudhar » Thu, 2011-02-24 00:36 |
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1,933 |
by smlewis Mon, 2014-04-21 06:47 |
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local refinement by mahajanr » Mon, 2010-07-19 15:04 |
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1,838 |
by smlewis Mon, 2014-04-21 06:47 |
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ERROR: Unable to open file: ./1brs_0001.pdb by dkeidel » Tue, 2009-09-29 17:46 |
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2,772 |
by smlewis Mon, 2014-04-21 06:47 |
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How NMR structures can be inputted to Rosetta? by exchhattu » Mon, 2015-02-09 17:44 |
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1,793 |
by rmoretti Wed, 2015-02-18 09:19 |
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Some problems with the "advanced protein-protein docking" tutorial by Sunyp_IM » Tue, 2017-06-27 09:33 |
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1,534 |
by smlewis Wed, 2017-06-28 06:59 |
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IS there any source code about protein structure prediction with only sequences information? by ylwang » Mon, 2019-07-08 02:36 |
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1,222 |
by rmoretti Mon, 2019-07-08 08:05 |
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Extracting a part of a silent file as another silent file by almeida85 » Wed, 2021-07-28 23:53 |
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763 |
by zivben Sat, 2021-07-31 08:16 |
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Running Backrub by enoee » Wed, 2010-10-27 07:51 |
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1,907 |
by smlewis Mon, 2014-04-21 06:47 |
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how to docking including HETATM by tricia » Tue, 2009-05-05 22:03 |
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2,241 |
by smlewis Mon, 2014-04-21 06:47 |
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Fusing C-terminal or N-terminal segments onto proteins using Remodel by achambe » Tue, 2016-01-05 09:39 |
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2,118 |
by achambe Wed, 2016-01-13 10:46 |
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How to judge docking success for two proteins without knowledge of native structure by jasnyderjr » Fri, 2015-07-10 14:27 |
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2,320 |
by rmoretti Tue, 2015-07-14 15:27 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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884 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,210 |
by sayan500 Tue, 2019-07-30 22:20 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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1,264 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
0 |
707 |
by ate Sat, 2021-05-01 02:52 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
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1,612 |
by jurkm Mon, 2014-04-21 06:47 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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273 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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Temperature by mrosam » Mon, 2022-08-08 01:37 |
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167 |
by mrosam Mon, 2022-08-08 01:37 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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708 |
by LTJ Mon, 2020-07-06 14:13 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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484 |
by ate Wed, 2021-06-16 19:19 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,467 |
by DanielK Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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767 |
by matteoferla Sun, 2020-03-22 05:29 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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762 |
by rohi Thu, 2020-10-15 10:28 |
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What should I do to lower down the fa_sol scores? by JasonIsaac » Mon, 2022-12-05 18:57 |
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214 |
by JasonIsaac Mon, 2022-12-05 18:57 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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704 |
by YuFei Wed, 2020-04-22 17:27 |
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Calculating shape complementarity of ligand and protein by varunmc99 » Tue, 2023-01-17 11:29 |
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71 |
by varunmc99 Tue, 2023-01-17 11:29 |
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Ab Initio folding of protein with multiple chains? by myang » Tue, 2009-11-24 13:01 |
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1,388 |
by myang Mon, 2014-04-21 06:47 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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575 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Failure to produce a cst file by biotech » Wed, 2022-10-26 11:17 |
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145 |
by biotech Wed, 2022-10-26 11:17 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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703 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
0 |
1,115 |
by wentlewi Sat, 2020-05-16 08:06 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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882 |
by fgomes Fri, 2019-11-22 19:12 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,491 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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909 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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919 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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601 |
by rvandamme Mon, 2021-02-01 13:39 |
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Clustering Poses from RosettaDock by ctaylor » Tue, 2009-12-29 06:38 |
0 |
1,317 |
by ctaylor Mon, 2014-04-21 06:47 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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650 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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600 |
by Corvin Wed, 2021-05-19 07:54 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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644 |
by adityapadhi Wed, 2020-06-24 01:29 |
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Problems with ICOOR when generating polymer params file by liuwenxi » Tue, 2022-08-09 08:33 |
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162 |
by liuwenxi Tue, 2022-08-09 08:33 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,547 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
0 |
1,025 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,199 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
0 |
675 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
0 |
343 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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N-Terminal Galactose by SebastianBB » Mon, 2022-11-21 08:33 |
0 |
166 |
by SebastianBB Mon, 2022-11-21 08:33 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
0 |
1,485 |
by abdullah Mon, 2014-04-21 06:47 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
0 |
1,393 |
by vasek Mon, 2014-04-21 06:48 |
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Homology modeling starter script by gobli033 » Thu, 2010-04-01 07:27 |
0 |
1,322 |
by gobli033 Mon, 2014-04-21 06:47 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
0 |
870 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
0 |
863 |
by matteoferla Tue, 2020-07-14 01:51 |
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Get fasta from PDB script correction - Solved by ialvy » Tue, 2022-08-30 00:00 |
0 |
180 |
by ialvy Tue, 2022-08-30 00:00 |
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Could somebody interpret the rosetta's cluster application result? by exchhattu » Mon, 2009-11-16 01:58 |
0 |
1,462 |
by exchhattu Mon, 2014-04-21 06:47 |
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cluster results by albumns » Sun, 2010-07-18 23:59 |
0 |
1,239 |
by albumns Mon, 2014-04-21 06:47 |
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To smlewis............parallel job submission by anusmita_sahoo » Mon, 2010-04-19 22:28 |
0 |
1,334 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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778 |
by jmaly Wed, 2020-09-02 16:16 |
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Rosettascript - change residue number and chain ID by cttm4a1 » Wed, 2022-09-14 23:40 |
0 |
156 |
by cttm4a1 Wed, 2022-09-14 23:40 |
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