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Rosetta 3 - General
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I've got two doubts by jrcf » Sun, 2016-01-10 07:45 |
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1,474 |
by smlewis Sun, 2016-01-10 10:02 |
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Sequence Profile/Checkpoint file by ojmel » Fri, 2021-04-02 17:29 |
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685 |
by taylorjones Mon, 2021-04-05 13:17 |
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Ambiguous constraints are ignored in ab initio by mschneid » Wed, 2014-06-18 04:33 |
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1,876 |
by rmoretti Tue, 2014-07-01 12:21 |
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Docking Local Refine Not Moving Input by SenyorDrew » Sat, 2017-10-21 08:26 |
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1,150 |
by SenyorDrew Mon, 2017-11-20 13:27 |
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How did you begin to learn Rosetta? by mdeklotz » Mon, 2018-07-30 10:08 |
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1,527 |
by jkleman Tue, 2018-07-31 13:19 |
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Fragment Picker score type weights by wellsm10 » Mon, 2020-12-14 13:05 |
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788 |
by dgront Thu, 2021-02-11 08:30 |
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What's the unit of Rosetta energy function? by Run » Tue, 2014-06-24 00:44 |
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5,219 |
by rmoretti Tue, 2014-07-01 12:45 |
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How to extract antibody from a set of pdb file may may contain antigen? by Sunyp_IM » Mon, 2017-11-13 17:11 |
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1,058 |
by ac.research Sat, 2017-11-18 06:54 |
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mpi + mp_mutate_relax by decrSTL » Thu, 2020-01-16 10:47 |
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966 |
by jkleman Thu, 2020-01-16 11:05 |
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mcm for Docking in Rosetta3.1 by dyq » Tue, 2010-01-12 13:44 |
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1,846 |
by smlewis Mon, 2014-04-21 06:47 |
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How to install Rosetta in Redhat Linux ? by ajaniharesh » Fri, 2012-02-24 02:32 |
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4,802 |
by smlewis Mon, 2014-04-21 06:47 |
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Scoring when the protein is a different length by gw » Wed, 2012-08-01 08:53 |
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2,406 |
by smlewis Mon, 2014-04-21 06:47 |
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Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax by MA » Wed, 2017-07-26 01:12 |
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1,075 |
by rmoretti Mon, 2017-08-21 09:55 |
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loop modelling on complex structure by Tianyang89 » Fri, 2020-09-18 07:24 |
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816 |
by amelie.stein Mon, 2020-09-28 10:41 |
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packing option "explicit_h2o" and "solvate" by SunH » Wed, 2010-11-17 00:03 |
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2,022 |
by smlewis Mon, 2014-04-21 06:47 |
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Protein-Protein Docking by hwillis » Fri, 2009-08-07 01:31 |
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2,105 |
by smlewis Mon, 2014-04-21 06:47 |
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Antibody Modeling Question by rbehan » Fri, 2016-02-05 13:57 |
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1,408 |
by jadolfbr Fri, 2016-02-05 15:32 |
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How to define the surface (???.surf) for surface_docking? by Anpu » Thu, 2018-09-27 07:34 |
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696 |
by Anpu Thu, 2018-09-27 23:36 |
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protein location change during Docking protocol by Hyun » Tue, 2022-03-29 19:53 |
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89 |
by Hyun Tue, 2022-03-29 19:53 |
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Rosetta and SAM 3.5! by wtscrystal » Sat, 2009-11-14 22:49 |
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1,628 |
by wtscrystal Mon, 2014-04-21 06:47 |
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Ab Initio structure prediction by abhishek » Tue, 2009-04-21 23:37 |
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1,292 |
by abhishek Mon, 2014-04-21 06:47 |
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crashed when loading RDC data by yangshen12 » Fri, 2018-10-26 12:34 |
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733 |
by yangshen12 Fri, 2018-10-26 12:34 |
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RifGen error on rosetta, "assertion failed", please help! by guowuchen » Thu, 2022-05-05 06:20 |
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147 |
by guowuchen Thu, 2022-05-05 06:20 |
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compile make_fragments.pl by justin » Wed, 2009-12-02 00:42 |
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1,246 |
by justin Mon, 2014-04-21 06:47 |
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Error on rna_denovo_setup.py by zahra_AZ » Mon, 2020-11-09 02:23 |
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630 |
by zahra_AZ Mon, 2020-11-09 02:23 |
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sam.predict-2nd for make_fragments.pl script by sumukh21 » Tue, 2011-02-22 17:40 |
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1,275 |
by sumukh21 Mon, 2014-04-21 06:47 |
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[dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing? by ipetrik_ambry » Mon, 2017-10-30 17:03 |
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776 |
by ipetrik_ambry Mon, 2017-10-30 17:03 |
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RosettaDesign improvements by ac.research » Mon, 2018-05-14 08:27 |
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772 |
by ac.research Mon, 2018-05-14 08:27 |
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shockingly low fragment diversity ___nnmake failed by anusmita_sahoo » Wed, 2010-03-10 21:15 |
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1,201 |
by anusmita_sahoo Mon, 2014-04-21 06:47 |
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How to generate a symmetry definition file for octahedral symmetry? by Anonymous » Wed, 2012-08-15 05:20 |
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2,074 |
by Anonymous Mon, 2014-04-21 06:47 |
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Enzyme design gets 0 hit by cryosky » Sun, 2021-09-26 13:24 |
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378 |
by cryosky Sun, 2021-09-26 13:24 |
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Scoring Centroid Structures by Trentage » Sun, 2010-03-28 19:21 |
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1,587 |
by Trentage Mon, 2014-04-21 06:47 |
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Remodel and the depracated EMPTY NC by matteoferla » Fri, 2021-02-26 07:12 |
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531 |
by matteoferla Fri, 2021-02-26 07:12 |
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AddMembrane Mover Segmentation Fault by csvajda » Thu, 2022-04-14 14:02 |
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111 |
by csvajda Thu, 2022-04-14 14:02 |
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Webinar? by IgaK » Thu, 2009-11-19 03:26 |
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1,213 |
by IgaK Mon, 2014-04-21 06:47 |
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Running CstFileToTheozyme for Mono-Atomic Metal by Jhreed » Fri, 2016-07-08 13:43 |
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946 |
by Jhreed Fri, 2016-07-08 13:44 |
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I made a params file generation webpage by matteoferla » Wed, 2020-07-22 03:08 |
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543 |
by matteoferla Wed, 2020-07-22 03:08 |
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Correct way to force a specific histidine tautomer by matteoferla » Fri, 2020-04-10 02:40 |
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706 |
by matteoferla Fri, 2020-04-10 02:40 |
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Error when using rna_denovo in TACC stampede2 HPC by lsong2 » Thu, 2021-11-18 10:31 |
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270 |
by lsong2 Thu, 2021-11-18 10:31 |
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restrict PackRotamersMover by pmit » Thu, 2018-05-03 01:48 |
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697 |
by pmit Thu, 2018-05-03 01:48 |
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Error: Element 'RandomizeBBByRamaPrePro': This element is not expected. by nferruz » Fri, 2020-08-28 06:04 |
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587 |
by nferruz Fri, 2020-08-28 06:05 |
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BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set by pedro.guillem » Wed, 2020-05-13 18:31 |
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532 |
by pedro.guillem Wed, 2020-06-24 04:42 |
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RosettaDock-3.2 output by Zjq1998 » Wed, 2022-06-15 23:54 |
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53 |
by Zjq1998 Wed, 2022-06-15 23:54 |
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Helical symmetry for cryo-EM refinement by fmerino » Mon, 2017-10-16 04:02 |
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1,041 |
by fmerino Mon, 2017-10-16 04:02 |
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mpi_MSD for antibody design by hanzhiz » Thu, 2021-12-16 09:32 |
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227 |
by hanzhiz Thu, 2021-12-16 09:32 |
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keep ATP in the kinase-peptide structure while docking by ziqi1234 » Fri, 2017-11-10 04:04 |
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770 |
by ziqi1234 Fri, 2017-11-10 04:04 |
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Error in Loop Modeling by sayan500 » Tue, 2019-07-30 22:20 |
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1,032 |
by sayan500 Tue, 2019-07-30 22:20 |
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make_fragments.pl by rlwoltz » Fri, 2019-02-01 10:31 |
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1,119 |
by rlwoltz Fri, 2019-02-01 10:31 |
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Using NCAA by ate » Sat, 2021-05-01 02:52 |
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563 |
by ate Sat, 2021-05-01 02:52 |
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Using FastSAXS Scoring Protocol by jurkm » Tue, 2011-09-20 07:40 |
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1,507 |
by jurkm Mon, 2014-04-21 06:47 |
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Ensemble file required for both partners with docking prepack protocol by katherinemccoy » Tue, 2022-03-29 14:26 |
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96 |
by katherinemccoy Tue, 2022-03-29 14:26 |
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Questions about alanine scanning in Rosetta by LTJ » Mon, 2020-07-06 14:13 |
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566 |
by LTJ Mon, 2020-07-06 14:13 |
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Flex-pep-docking (ab-initio mode) by ate » Wed, 2021-06-16 19:19 |
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354 |
by ate Wed, 2021-06-16 19:19 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:23 |
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1,352 |
by DanielK Mon, 2014-04-21 06:47 |
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SARS-CoV-2: call for compound predictions against protease by matteoferla » Sun, 2020-03-22 05:29 |
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640 |
by matteoferla Sun, 2020-03-22 05:29 |
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rosetta scripts to superimpose multiple segments by rlwoltz » Fri, 2022-04-29 15:15 |
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76 |
by rlwoltz Fri, 2022-04-29 15:15 |
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using full atom constraint in docking by rohi » Thu, 2020-10-15 10:28 |
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630 |
by rohi Thu, 2020-10-15 10:28 |
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running ROBETTA protocol for proteins >1000 aa long by tevang » Thu, 2010-07-15 07:09 |
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1,267 |
by tevang Mon, 2014-04-21 06:47 |
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ligand docking error by YuFei » Wed, 2020-04-22 17:27 |
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576 |
by YuFei Wed, 2020-04-22 17:27 |
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pyRosetta problem by exchhattu » Sun, 2010-07-25 22:25 |
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1,190 |
by exchhattu Mon, 2014-04-21 06:47 |
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Docking Metalloprotein-Protein by fgomes » Fri, 2019-11-22 19:12 |
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688 |
by fgomes Fri, 2019-11-22 19:12 |
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How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion by wwwmrzkwww » Sun, 2021-08-15 00:19 |
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425 |
by wwwmrzkwww Sun, 2021-08-15 00:19 |
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Searching density map using real space correlation by ahmadkhalifa » Fri, 2018-12-28 00:28 |
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602 |
by ahmadkhalifa Fri, 2018-12-28 00:28 |
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Error in flex ddG tutorial by wentlewi » Sat, 2020-05-16 08:06 |
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890 |
by wentlewi Sat, 2020-05-16 08:06 |
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Cryo-EM: problem with RosettaCM using multiple template models as input by Karol » Mon, 2016-08-29 05:26 |
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1,362 |
by Karol Mon, 2016-08-29 05:27 |
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Method to keep ATP in the certain position in the prepack step by ziqi1234 » Tue, 2017-11-21 05:55 |
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789 |
by ziqi1234 Tue, 2017-11-21 05:55 |
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incomparable ddG values by ela » Fri, 2018-08-31 02:53 |
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799 |
by ela Fri, 2018-08-31 02:53 |
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rna_denovo secstruct_general function by rvandamme » Mon, 2021-02-01 13:39 |
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466 |
by rvandamme Mon, 2021-02-01 13:39 |
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how to build homology based models? by albumns » Thu, 2010-06-24 10:27 |
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1,224 |
by albumns Mon, 2014-04-21 06:47 |
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Clustering error - Help, please by karolcia1010 » Wed, 2020-06-17 11:19 |
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531 |
by karolcia1010 Wed, 2020-06-17 11:19 |
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Meaning of Metalbinding_constraint by Corvin » Wed, 2021-05-19 07:54 |
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464 |
by Corvin Wed, 2021-05-19 07:54 |
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Centroid disulfide score weights by vasek » Wed, 2014-01-22 23:34 |
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1,293 |
by vasek Mon, 2014-04-21 06:48 |
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Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol by adityapadhi » Wed, 2020-06-24 01:29 |
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527 |
by adityapadhi Wed, 2020-06-24 01:29 |
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General Forum Suggestion by jadolfbr » Thu, 2011-09-29 08:11 |
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2,441 |
by jadolfbr Mon, 2014-04-21 06:47 |
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lDDT: local Distance Difference Test implemented? by ipetrik_ambry » Wed, 2017-12-06 13:11 |
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883 |
by ipetrik_ambry Wed, 2017-12-06 13:11 |
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Constraints use in RosettaCM by a.book » Wed, 2018-10-03 12:11 |
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1,029 |
by a.book Wed, 2018-10-03 15:56 |
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Does it make sense to perform Docking on a complex? by chrisHKL » Mon, 2020-02-17 09:12 |
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567 |
by chrisHKL Mon, 2020-02-17 09:12 |
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InterfaceDdGMover and ResfileReader by asaf.farhi » Wed, 2022-04-13 15:05 |
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117 |
by asaf.farhi Wed, 2022-04-13 15:05 |
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Rosetta membrane prediction! by wtscrystal » Tue, 2009-11-17 05:55 |
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2,029 |
by wtscrystal Mon, 2014-04-21 06:47 |
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maxsub calculation in scoring app by abdullah » Thu, 2011-04-28 06:47 |
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1,389 |
by abdullah Mon, 2014-04-21 06:47 |
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Problem running make_fragments.pl script by anirbanzz » Thu, 2010-04-22 01:27 |
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1,485 |
by anirbanzz Mon, 2014-04-21 06:47 |
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FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py by obdulia » Wed, 2018-04-18 00:45 |
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756 |
by obdulia Wed, 2018-04-18 00:45 |
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"Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))" by matteoferla » Tue, 2020-07-14 01:51 |
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556 |
by matteoferla Tue, 2020-07-14 01:51 |
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what factors determine the lowest (best) LigInterfaceEnergy score? by jmaly » Wed, 2020-08-26 13:07 |
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643 |
by jmaly Wed, 2020-09-02 16:16 |
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Membrane AbInitio by coxford » Sat, 2012-12-22 05:06 |
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2,153 |
by coxford Mon, 2014-04-21 06:47 |
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Error using FilterScan with rosettascripts by SenyorDrew » Tue, 2016-12-13 14:29 |
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974 |
by SenyorDrew Tue, 2016-12-13 14:29 |
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Show I be using beta_nov16 scorefxn? by matteoferla » Thu, 2021-04-01 04:06 |
0 |
575 |
by matteoferla Thu, 2021-04-01 04:06 |
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SnugDock or RosettaDock for HDX-MS data by hanzhiz » Thu, 2021-12-16 09:18 |
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226 |
by hanzhiz Thu, 2021-12-16 09:18 |
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RosettaCM: help to generate similar models as those from Robetta Server by haom » Wed, 2020-09-09 09:19 |
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609 |
by haom Wed, 2020-09-09 09:19 |
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error message of runing make_fragment by joseph » Fri, 2010-11-12 11:46 |
0 |
1,557 |
by joseph Mon, 2014-04-21 06:47 |
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RosettaMatch Problem by David » Tue, 2019-01-22 12:23 |
0 |
1,157 |
by David Tue, 2019-01-22 12:23 |
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Using NCAA by ate » Sat, 2021-05-01 02:22 |
0 |
517 |
by ate Sat, 2021-05-01 02:22 |
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Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released! by xujc » Wed, 2012-10-24 11:15 |
0 |
3,789 |
by xujc Mon, 2014-04-21 06:47 |
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Need help finding the best predicted structure after running ab initio by burkheadlab » Tue, 2011-06-21 11:18 |
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1,784 |
by burkheadlab Mon, 2014-04-21 06:47 |
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Segmentation fault on antibody structure prediction by dkesar » Fri, 2021-06-04 19:09 |
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399 |
by dkesar Fri, 2021-06-04 19:09 |
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abnitio in only part of pdb and map fitting by tiagogomes89 » Mon, 2014-12-15 08:57 |
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1,201 |
by tiagogomes89 Mon, 2014-12-15 08:57 |
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Obtaining all PDB IDs containing similar binding sites for a specific ligand by Antonia » Wed, 2021-06-16 12:30 |
0 |
355 |
by Antonia Wed, 2021-06-16 12:30 |
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possible error in make_fragments.pl and fix by DanielK » Fri, 2012-04-27 02:21 |
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1,151 |
by DanielK Mon, 2014-04-21 06:47 |
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How to export high energy state pdb out of backrub? by whiteqiu » Mon, 2021-03-01 18:32 |
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428 |
by whiteqiu Mon, 2021-03-01 18:32 |
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Question about remodelling by tonycheng1688 » Mon, 2022-04-25 13:51 |
0 |
91 |
by tonycheng1688 Mon, 2022-04-25 13:51 |
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