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Rosetta 3 - General

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Normal topic I've got two doubts
by jrcf » Sun, 2016-01-10 07:45
1
1,474 by smlewis
Sun, 2016-01-10 10:02
Normal topic Sequence Profile/Checkpoint file
by ojmel » Fri, 2021-04-02 17:29
1
685 by taylorjones
Mon, 2021-04-05 13:17
Normal topic Ambiguous constraints are ignored in ab initio
by mschneid » Wed, 2014-06-18 04:33
1
1,876 by rmoretti
Tue, 2014-07-01 12:21
Normal topic Docking Local Refine Not Moving Input
by SenyorDrew » Sat, 2017-10-21 08:26
1
1,150 by SenyorDrew
Mon, 2017-11-20 13:27
Normal topic How did you begin to learn Rosetta?
by mdeklotz » Mon, 2018-07-30 10:08
1
1,527 by jkleman
Tue, 2018-07-31 13:19
Normal topic Fragment Picker score type weights
by wellsm10 » Mon, 2020-12-14 13:05
1
788 by dgront
Thu, 2021-02-11 08:30
Normal topic What's the unit of Rosetta energy function?
by Run » Tue, 2014-06-24 00:44
1
5,219 by rmoretti
Tue, 2014-07-01 12:45
Normal topic How to extract antibody from a set of pdb file may may contain antigen?
by Sunyp_IM » Mon, 2017-11-13 17:11
1
1,058 by ac.research
Sat, 2017-11-18 06:54
Normal topic mpi + mp_mutate_relax
by decrSTL » Thu, 2020-01-16 10:47
1
966 by jkleman
Thu, 2020-01-16 11:05
Normal topic mcm for Docking in Rosetta3.1
by dyq » Tue, 2010-01-12 13:44
1
1,846 by smlewis
Mon, 2014-04-21 06:47
Normal topic How to install Rosetta in Redhat Linux ?
by ajaniharesh » Fri, 2012-02-24 02:32
1
4,802 by smlewis
Mon, 2014-04-21 06:47
Normal topic Scoring when the protein is a different length
by gw » Wed, 2012-08-01 08:53
1
2,406 by smlewis
Mon, 2014-04-21 06:47
Normal topic Problem with the top 25 fragments used in the library of 200 nine-residue fragments in AbinitioRelax
by MA » Wed, 2017-07-26 01:12
1
1,075 by rmoretti
Mon, 2017-08-21 09:55
Normal topic loop modelling on complex structure
by Tianyang89 » Fri, 2020-09-18 07:24
1
816 by amelie.stein
Mon, 2020-09-28 10:41
Normal topic packing option "explicit_h2o" and "solvate"
by SunH » Wed, 2010-11-17 00:03
1
2,022 by smlewis
Mon, 2014-04-21 06:47
Normal topic Protein-Protein Docking
by hwillis » Fri, 2009-08-07 01:31
1
2,105 by smlewis
Mon, 2014-04-21 06:47
Normal topic Antibody Modeling Question
by rbehan » Fri, 2016-02-05 13:57
1
1,408 by jadolfbr
Fri, 2016-02-05 15:32
Normal topic How to define the surface (???.surf) for surface_docking?
by Anpu » Thu, 2018-09-27 07:34
0
696 by Anpu
Thu, 2018-09-27 23:36
Normal topic protein location change during Docking protocol
by Hyun » Tue, 2022-03-29 19:53
0
89 by Hyun
Tue, 2022-03-29 19:53
Normal topic Rosetta and SAM 3.5!
by wtscrystal » Sat, 2009-11-14 22:49
0
1,628 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic Ab Initio structure prediction
by abhishek » Tue, 2009-04-21 23:37
0
1,292 by abhishek
Mon, 2014-04-21 06:47
Normal topic crashed when loading RDC data
by yangshen12 » Fri, 2018-10-26 12:34
0
733 by yangshen12
Fri, 2018-10-26 12:34
Normal topic RifGen error on rosetta, "assertion failed", please help!
by guowuchen » Thu, 2022-05-05 06:20
0
147 by guowuchen
Thu, 2022-05-05 06:20
Normal topic compile make_fragments.pl
by justin » Wed, 2009-12-02 00:42
0
1,246 by justin
Mon, 2014-04-21 06:47
Normal topic Error on rna_denovo_setup.py
by zahra_AZ » Mon, 2020-11-09 02:23
0
630 by zahra_AZ
Mon, 2020-11-09 02:23
Normal topic sam.predict-2nd for make_fragments.pl script
by sumukh21 » Tue, 2011-02-22 17:40
0
1,275 by sumukh21
Mon, 2014-04-21 06:47
Normal topic [dev] examples for implementing setup_for_packing, prepare_rotamers_for_packing?
by ipetrik_ambry » Mon, 2017-10-30 17:03
0
776 by ipetrik_ambry
Mon, 2017-10-30 17:03
Normal topic RosettaDesign improvements
by ac.research » Mon, 2018-05-14 08:27
0
772 by ac.research
Mon, 2018-05-14 08:27
Normal topic shockingly low fragment diversity ___nnmake failed
by anusmita_sahoo » Wed, 2010-03-10 21:15
0
1,201 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic How to generate a symmetry definition file for octahedral symmetry?
by Anonymous » Wed, 2012-08-15 05:20
0
2,074 by Anonymous
Mon, 2014-04-21 06:47
Normal topic Enzyme design gets 0 hit
by cryosky » Sun, 2021-09-26 13:24
0
378 by cryosky
Sun, 2021-09-26 13:24
Normal topic Scoring Centroid Structures
by Trentage » Sun, 2010-03-28 19:21
0
1,587 by Trentage
Mon, 2014-04-21 06:47
Normal topic Remodel and the depracated EMPTY NC
by matteoferla » Fri, 2021-02-26 07:12
0
531 by matteoferla
Fri, 2021-02-26 07:12
Normal topic AddMembrane Mover Segmentation Fault
by csvajda » Thu, 2022-04-14 14:02
0
111 by csvajda
Thu, 2022-04-14 14:02
Normal topic Webinar?
by IgaK » Thu, 2009-11-19 03:26
0
1,213 by IgaK
Mon, 2014-04-21 06:47
Normal topic Running CstFileToTheozyme for Mono-Atomic Metal
by Jhreed » Fri, 2016-07-08 13:43
0
946 by Jhreed
Fri, 2016-07-08 13:44
Normal topic I made a params file generation webpage
by matteoferla » Wed, 2020-07-22 03:08
0
543 by matteoferla
Wed, 2020-07-22 03:08
Normal topic Correct way to force a specific histidine tautomer
by matteoferla » Fri, 2020-04-10 02:40
0
706 by matteoferla
Fri, 2020-04-10 02:40
Normal topic Error when using rna_denovo in TACC stampede2 HPC
by lsong2 » Thu, 2021-11-18 10:31
0
270 by lsong2
Thu, 2021-11-18 10:31
Normal topic restrict PackRotamersMover
by pmit » Thu, 2018-05-03 01:48
0
697 by pmit
Thu, 2018-05-03 01:48
Normal topic Error: Element 'RandomizeBBByRamaPrePro': This element is not expected.
by nferruz » Fri, 2020-08-28 06:04
0
587 by nferruz
Fri, 2020-08-28 06:05
Normal topic BUG REPORT: MySql column protocol.protocol_id must have the AUTO_INCREMENT flag set
by pedro.guillem » Wed, 2020-05-13 18:31
0
532 by pedro.guillem
Wed, 2020-06-24 04:42
Normal topic RosettaDock-3.2 output
by Zjq1998 » Wed, 2022-06-15 23:54
0
53 by Zjq1998
Wed, 2022-06-15 23:54
Normal topic Helical symmetry for cryo-EM refinement
by fmerino » Mon, 2017-10-16 04:02
0
1,041 by fmerino
Mon, 2017-10-16 04:02
Normal topic mpi_MSD for antibody design
by hanzhiz » Thu, 2021-12-16 09:32
0
227 by hanzhiz
Thu, 2021-12-16 09:32
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
0
770 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
1,032 by sayan500
Tue, 2019-07-30 22:20
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
1,119 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
0
563 by ate
Sat, 2021-05-01 02:52
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,507 by jurkm
Mon, 2014-04-21 06:47
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
96 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
566 by LTJ
Mon, 2020-07-06 14:13
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
354 by ate
Wed, 2021-06-16 19:19
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,352 by DanielK
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
640 by matteoferla
Sun, 2020-03-22 05:29
Normal topic rosetta scripts to superimpose multiple segments
by rlwoltz » Fri, 2022-04-29 15:15
0
76 by rlwoltz
Fri, 2022-04-29 15:15
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
630 by rohi
Thu, 2020-10-15 10:28
Normal topic running ROBETTA protocol for proteins >1000 aa long
by tevang » Thu, 2010-07-15 07:09
0
1,267 by tevang
Mon, 2014-04-21 06:47
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
576 by YuFei
Wed, 2020-04-22 17:27
Normal topic pyRosetta problem
by exchhattu » Sun, 2010-07-25 22:25
0
1,190 by exchhattu
Mon, 2014-04-21 06:47
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
0
688 by fgomes
Fri, 2019-11-22 19:12
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
0
425 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
602 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
0
890 by wentlewi
Sat, 2020-05-16 08:06
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,362 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
789 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
0
799 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
466 by rvandamme
Mon, 2021-02-01 13:39
Normal topic how to build homology based models?
by albumns » Thu, 2010-06-24 10:27
0
1,224 by albumns
Mon, 2014-04-21 06:47
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
531 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
464 by Corvin
Wed, 2021-05-19 07:54
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,293 by vasek
Mon, 2014-04-21 06:48
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
527 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,441 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
883 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
1,029 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
567 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
117 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic Rosetta membrane prediction!
by wtscrystal » Tue, 2009-11-17 05:55
0
2,029 by wtscrystal
Mon, 2014-04-21 06:47
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,389 by abdullah
Mon, 2014-04-21 06:47
Normal topic Problem running make_fragments.pl script
by anirbanzz » Thu, 2010-04-22 01:27
0
1,485 by anirbanzz
Mon, 2014-04-21 06:47
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
756 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
556 by matteoferla
Tue, 2020-07-14 01:51
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
643 by jmaly
Wed, 2020-09-02 16:16
Normal topic Membrane AbInitio
by coxford » Sat, 2012-12-22 05:06
0
2,153 by coxford
Mon, 2014-04-21 06:47
Normal topic Error using FilterScan with rosettascripts
by SenyorDrew » Tue, 2016-12-13 14:29
0
974 by SenyorDrew
Tue, 2016-12-13 14:29
Normal topic Show I be using beta_nov16 scorefxn?
by matteoferla » Thu, 2021-04-01 04:06
0
575 by matteoferla
Thu, 2021-04-01 04:06
Normal topic SnugDock or RosettaDock for HDX-MS data
by hanzhiz » Thu, 2021-12-16 09:18
0
226 by hanzhiz
Thu, 2021-12-16 09:18
Normal topic RosettaCM: help to generate similar models as those from Robetta Server
by haom » Wed, 2020-09-09 09:19
0
609 by haom
Wed, 2020-09-09 09:19
Normal topic error message of runing make_fragment
by joseph » Fri, 2010-11-12 11:46
0
1,557 by joseph
Mon, 2014-04-21 06:47
Normal topic RosettaMatch Problem
by David » Tue, 2019-01-22 12:23
0
1,157 by David
Tue, 2019-01-22 12:23
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:22
0
517 by ate
Sat, 2021-05-01 02:22
Normal topic Rosetta@cloud -- Macromolecular modeling in the cloud, Beta 1 is released!
by xujc » Wed, 2012-10-24 11:15
0
3,789 by xujc
Mon, 2014-04-21 06:47
Normal topic Need help finding the best predicted structure after running ab initio
by burkheadlab » Tue, 2011-06-21 11:18
0
1,784 by burkheadlab
Mon, 2014-04-21 06:47
Normal topic Segmentation fault on antibody structure prediction
by dkesar » Fri, 2021-06-04 19:09
0
399 by dkesar
Fri, 2021-06-04 19:09
Normal topic abnitio in only part of pdb and map fitting
by tiagogomes89 » Mon, 2014-12-15 08:57
0
1,201 by tiagogomes89
Mon, 2014-12-15 08:57
Normal topic Obtaining all PDB IDs containing similar binding sites for a specific ligand
by Antonia » Wed, 2021-06-16 12:30
0
355 by Antonia
Wed, 2021-06-16 12:30
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:21
0
1,151 by DanielK
Mon, 2014-04-21 06:47
Normal topic How to export high energy state pdb out of backrub?
by whiteqiu » Mon, 2021-03-01 18:32
0
428 by whiteqiu
Mon, 2021-03-01 18:32
Normal topic Question about remodelling
by tonycheng1688 » Mon, 2022-04-25 13:51
0
91 by tonycheng1688
Mon, 2022-04-25 13:51
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