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Rosetta 3 - General

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Normal topic positive results in total_score by symmetry docking
by Jacob » Thu, 2011-06-16 05:18
1
3,103 by rmoretti
Mon, 2014-04-21 06:47
Normal topic CS-Rosetta fragments
by isengupta13 » Sun, 2010-05-16 08:08
1
2,407 by AndrewBworth
Mon, 2014-04-21 06:47
Normal topic Pair potential
by jadolfbr » Thu, 2011-12-08 08:06
1
2,376 by smlewis
Mon, 2014-04-21 06:47
Normal topic Dumb question: Rosetta 3 vs Rosetta++, what's the difference?
by mintseris » Tue, 2013-12-31 13:03
1
2,226 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Running the Matcher on multiple PDBs
by Jhreed » Thu, 2016-02-18 08:50
1
1,741 by rmoretti
Sun, 2016-02-21 06:38
Normal topic [dev] not seeing energy in pose row for new energy term in design
by ipetrik_ambry » Fri, 2017-03-03 13:16
1
1,658 by ipetrik_ambry
Tue, 2017-03-14 14:09
Normal topic Denovo prediction from multiple fragment lengths
by ahmadkhalifa » Sun, 2019-03-24 03:55
1
1,088 by rmoretti
Sat, 2019-03-30 12:10
Normal topic Ligand docking: how to generate the crystal_complex.pdb with hydrogens added
by nhinguyen26 » Wed, 2020-06-17 15:03
1
1,028 by matteoferla
Sat, 2020-06-20 03:56
Normal topic FastRelax Mover with symmetry, ligand and membrane
by Michele.Bonus » Wed, 2021-05-26 04:43
1
975 by matteoferla
Thu, 2021-06-03 08:24
Normal topic Ensemble Docking with RosettaDock 4.0 Protocol
by mb0261 » Wed, 2022-07-27 07:00
1
369 by mb0261
Mon, 2022-09-26 07:50
Normal topic ratio of conformers and docking output
by pramod » Fri, 2014-12-12 12:54
1
1,965 by rmoretti
Mon, 2014-12-15 02:37
Normal topic setup_run error with multiple resonance lists
by aep » Fri, 2016-03-18 13:36
1
1,768 by rmoretti
Thu, 2016-04-28 15:49
Normal topic problems with implementing NOE constraints
by connyyu » Thu, 2019-04-11 12:37
1
1,117 by connyyu
Thu, 2019-04-18 03:26
Normal topic simple_cycpep_predict issue modifying terminal residue
by JEaston » Thu, 2020-06-25 13:15
1
1,000 by vmulligan
Mon, 2020-06-29 13:09
Normal topic Internal error while running AbinitioRelax
by Subhrodeep Saha » Sun, 2021-06-13 03:44
1
765 by rmoretti
Wed, 2021-06-23 02:17
Normal topic Available of some protocals mentioned in publications
by SunH » Mon, 2013-09-09 20:47
1
1,806 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Error when using next-gen KIC (Signal 6)
by janwp » Tue, 2014-08-26 08:36
1
2,542 by amelie
Tue, 2014-09-30 14:29
Normal topic Can I use next generation KIC with fragments?
by Loki01 » Thu, 2017-12-07 06:19
1
1,267 by Loki01
Wed, 2017-12-13 05:27
Normal topic Params file for Methane
by dasdevashishdas » Sun, 2018-10-07 21:34
1
1,188 by rmoretti
Mon, 2018-10-08 11:20
Normal topic Are 100 structures the maximum generated when using homology_with_end_extension (broker protocol)?
by thaisarns » Fri, 2020-02-21 05:46
1
992 by sheehajh
Fri, 2020-02-21 12:41
Normal topic Residue outside res_map range
by amcallister » Fri, 2022-04-22 11:26
1
367 by aneeqh
Fri, 2022-09-02 13:36
Normal topic idealization error
by albumns » Mon, 2011-02-07 01:28
1
1,843 by smlewis
Mon, 2014-04-21 06:47
Normal topic Interpreting decoy ensemble
by lah435 » Wed, 2015-06-10 10:25
1
1,662 by rmoretti
Fri, 2015-07-03 13:51
Normal topic general question about protein docking
by albumns » Mon, 2010-12-13 23:26
1
2,184 by JeffreyGray
Mon, 2014-04-21 06:47
Normal topic Generate full symmetric assembly from subsystem
by lj269 » Thu, 2011-04-28 20:04
1
2,110 by IAndre
Mon, 2014-04-21 06:47
Normal topic About generating Fullatom structures
by wszjzhang » Wed, 2010-03-24 19:27
1
1,789 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open weights.
by libai2098 » Thu, 2010-12-30 17:54
1
1,873 by smlewis
Mon, 2014-04-21 06:47
Normal topic Rosetta movie.
by exchhattu » Mon, 2009-09-14 21:02
1
1,988 by smlewis
Mon, 2014-04-21 06:47
Normal topic How do the homology sequences exclude from fragment files?
by exchhattu » Mon, 2010-04-05 03:04
1
1,770 by smlewis
Mon, 2014-04-21 06:47
Normal topic Need help with compilation (How to test if compilation is sucessful)
by greenfur » Fri, 2012-06-29 12:29
1
2,715 by smlewis
Mon, 2014-04-21 06:47
Normal topic pdb 2 silent with ss information
by kalabharath » Sun, 2013-04-14 20:59
1
2,103 by smlewis
Mon, 2014-04-21 06:47
Normal topic non-canonical residues parametrisation
by DmitriiN » Tue, 2016-04-05 02:37
1
1,701 by rmoretti
Fri, 2016-04-08 08:43
Normal topic Library of unnatural amino acid parameters
by saxen » Mon, 2017-04-17 11:08
1
3,240 by smlewis
Tue, 2017-04-18 08:33
Normal topic How to provide multiple templates for Robetta with RosettaCM option?
by lanselibai » Wed, 2021-06-23 14:06
1
655 by lanselibai
Wed, 2021-06-23 14:53
Normal topic PDB weird to PDB rosetta friendly
by jpfuenzalidawx » Fri, 2022-09-02 04:43
1
200 by rmoretti
Tue, 2022-09-06 08:13
Normal topic null rosetta energy/score
by fred » Tue, 2011-10-18 10:31
1
1,875 by fred
Mon, 2014-04-21 06:47
Normal topic Derivative of the Energy function?
by MkM » Fri, 2010-01-15 08:00
1
2,059 by smlewis
Mon, 2014-04-21 06:47
Normal topic which modules support MPI now?
by albumns » Fri, 2013-11-08 01:32
1
1,855 by rmoretti
Mon, 2014-04-21 06:48
Normal topic Consistent XYZvector length() zero failure in EnzDes
by mwfranklin » Thu, 2018-11-01 12:44
1
1,295 by rmoretti
Wed, 2018-11-21 14:14
Normal topic ShapeSimilarity, ElectrostaticSimilarity (RosettaSurf)
by Ken » Mon, 2022-05-23 07:16
1
392 by ajasja
Mon, 2022-05-23 07:19
Normal topic location of define_interface.py
by rohi » Mon, 2020-10-26 19:42
1
1,005 by rmoretti
Mon, 2020-10-26 19:52
Normal topic Pairwise decomposable terms in the Rosetta energy function
by pgainza » Wed, 2011-08-03 12:26
1
3,153 by rmoretti
Mon, 2014-04-21 06:47
Normal topic snugdock and rosetta 3.2??
by sudhar » Thu, 2011-02-24 00:36
1
1,933 by smlewis
Mon, 2014-04-21 06:47
Normal topic local refinement
by mahajanr » Mon, 2010-07-19 15:04
1
1,838 by smlewis
Mon, 2014-04-21 06:47
Normal topic ERROR: Unable to open file: ./1brs_0001.pdb
by dkeidel » Tue, 2009-09-29 17:46
1
2,772 by smlewis
Mon, 2014-04-21 06:47
Normal topic How NMR structures can be inputted to Rosetta?
by exchhattu » Mon, 2015-02-09 17:44
1
1,793 by rmoretti
Wed, 2015-02-18 09:19
Normal topic Some problems with the "advanced protein-protein docking" tutorial
by Sunyp_IM » Tue, 2017-06-27 09:33
1
1,534 by smlewis
Wed, 2017-06-28 06:59
Normal topic IS there any source code about protein structure prediction with only sequences information?
by ylwang » Mon, 2019-07-08 02:36
1
1,222 by rmoretti
Mon, 2019-07-08 08:05
Normal topic Extracting a part of a silent file as another silent file
by almeida85 » Wed, 2021-07-28 23:53
1
763 by zivben
Sat, 2021-07-31 08:16
Normal topic Running Backrub
by enoee » Wed, 2010-10-27 07:51
1
1,907 by smlewis
Mon, 2014-04-21 06:47
Normal topic how to docking including HETATM
by tricia » Tue, 2009-05-05 22:03
1
2,241 by smlewis
Mon, 2014-04-21 06:47
Normal topic Fusing C-terminal or N-terminal segments onto proteins using Remodel
by achambe » Tue, 2016-01-05 09:39
1
2,118 by achambe
Wed, 2016-01-13 10:46
Normal topic How to judge docking success for two proteins without knowledge of native structure
by jasnyderjr » Fri, 2015-07-10 14:27
1
2,320 by rmoretti
Tue, 2015-07-14 15:27
Normal topic keep ATP in the kinase-peptide structure while docking
by ziqi1234 » Fri, 2017-11-10 04:04
0
884 by ziqi1234
Fri, 2017-11-10 04:04
Normal topic Error in Loop Modeling
by sayan500 » Tue, 2019-07-30 22:20
0
1,210 by sayan500
Tue, 2019-07-30 22:20
Normal topic make_fragments.pl
by rlwoltz » Fri, 2019-02-01 10:31
0
1,264 by rlwoltz
Fri, 2019-02-01 10:31
Normal topic Using NCAA
by ate » Sat, 2021-05-01 02:52
0
707 by ate
Sat, 2021-05-01 02:52
Normal topic Using FastSAXS Scoring Protocol
by jurkm » Tue, 2011-09-20 07:40
0
1,612 by jurkm
Mon, 2014-04-21 06:47
Normal topic Ensemble file required for both partners with docking prepack protocol
by katherinemccoy » Tue, 2022-03-29 14:26
0
273 by katherinemccoy
Tue, 2022-03-29 14:26
Normal topic Temperature
by mrosam » Mon, 2022-08-08 01:37
0
167 by mrosam
Mon, 2022-08-08 01:37
Normal topic Questions about alanine scanning in Rosetta
by LTJ » Mon, 2020-07-06 14:13
0
708 by LTJ
Mon, 2020-07-06 14:13
Normal topic Flex-pep-docking (ab-initio mode)
by ate » Wed, 2021-06-16 19:19
0
484 by ate
Wed, 2021-06-16 19:19
Normal topic possible error in make_fragments.pl and fix
by DanielK » Fri, 2012-04-27 02:23
0
1,467 by DanielK
Mon, 2014-04-21 06:47
Normal topic SARS-CoV-2: call for compound predictions against protease
by matteoferla » Sun, 2020-03-22 05:29
0
767 by matteoferla
Sun, 2020-03-22 05:29
Normal topic using full atom constraint in docking
by rohi » Thu, 2020-10-15 10:28
0
762 by rohi
Thu, 2020-10-15 10:28
Normal topic What should I do to lower down the fa_sol scores?
by JasonIsaac » Mon, 2022-12-05 18:57
0
214 by JasonIsaac
Mon, 2022-12-05 18:57
Normal topic ligand docking error
by YuFei » Wed, 2020-04-22 17:27
0
704 by YuFei
Wed, 2020-04-22 17:27
Normal topic Calculating shape complementarity of ligand and protein
by varunmc99 » Tue, 2023-01-17 11:29
0
71 by varunmc99
Tue, 2023-01-17 11:29
Normal topic Ab Initio folding of protein with multiple chains?
by myang » Tue, 2009-11-24 13:01
0
1,388 by myang
Mon, 2014-04-21 06:47
Normal topic How can I use InterfaceScore terms in docking as GenericMonteCarlo criterion
by wwwmrzkwww » Sun, 2021-08-15 00:19
0
575 by wwwmrzkwww
Sun, 2021-08-15 00:19
Normal topic Failure to produce a cst file
by biotech » Wed, 2022-10-26 11:17
0
145 by biotech
Wed, 2022-10-26 11:17
Normal topic Searching density map using real space correlation
by ahmadkhalifa » Fri, 2018-12-28 00:28
0
703 by ahmadkhalifa
Fri, 2018-12-28 00:28
Normal topic Error in flex ddG tutorial
by wentlewi » Sat, 2020-05-16 08:06
0
1,115 by wentlewi
Sat, 2020-05-16 08:06
Normal topic Docking Metalloprotein-Protein
by fgomes » Fri, 2019-11-22 19:12
0
882 by fgomes
Fri, 2019-11-22 19:12
Normal topic Cryo-EM: problem with RosettaCM using multiple template models as input
by Karol » Mon, 2016-08-29 05:26
0
1,491 by Karol
Mon, 2016-08-29 05:27
Normal topic Method to keep ATP in the certain position in the prepack step
by ziqi1234 » Tue, 2017-11-21 05:55
0
909 by ziqi1234
Tue, 2017-11-21 05:55
Normal topic incomparable ddG values
by ela » Fri, 2018-08-31 02:53
0
919 by ela
Fri, 2018-08-31 02:53
Normal topic rna_denovo secstruct_general function
by rvandamme » Mon, 2021-02-01 13:39
0
601 by rvandamme
Mon, 2021-02-01 13:39
Normal topic Clustering Poses from RosettaDock
by ctaylor » Tue, 2009-12-29 06:38
0
1,317 by ctaylor
Mon, 2014-04-21 06:47
Normal topic Clustering error - Help, please
by karolcia1010 » Wed, 2020-06-17 11:19
0
650 by karolcia1010
Wed, 2020-06-17 11:19
Normal topic Meaning of Metalbinding_constraint
by Corvin » Wed, 2021-05-19 07:54
0
600 by Corvin
Wed, 2021-05-19 07:54
Normal topic Finding affinity-reducing mutants towards a ligand in Ligand-based interface design protocol
by adityapadhi » Wed, 2020-06-24 01:29
0
644 by adityapadhi
Wed, 2020-06-24 01:29
Normal topic Problems with ICOOR when generating polymer params file
by liuwenxi » Tue, 2022-08-09 08:33
0
162 by liuwenxi
Tue, 2022-08-09 08:33
Normal topic General Forum Suggestion
by jadolfbr » Thu, 2011-09-29 08:11
0
2,547 by jadolfbr
Mon, 2014-04-21 06:47
Normal topic lDDT: local Distance Difference Test implemented?
by ipetrik_ambry » Wed, 2017-12-06 13:11
0
1,025 by ipetrik_ambry
Wed, 2017-12-06 13:11
Normal topic Constraints use in RosettaCM
by a.book » Wed, 2018-10-03 12:11
0
1,199 by a.book
Wed, 2018-10-03 15:56
Normal topic Does it make sense to perform Docking on a complex?
by chrisHKL » Mon, 2020-02-17 09:12
0
675 by chrisHKL
Mon, 2020-02-17 09:12
Normal topic InterfaceDdGMover and ResfileReader
by asaf.farhi » Wed, 2022-04-13 15:05
0
343 by asaf.farhi
Wed, 2022-04-13 15:05
Normal topic N-Terminal Galactose
by SebastianBB » Mon, 2022-11-21 08:33
0
166 by SebastianBB
Mon, 2022-11-21 08:33
Normal topic maxsub calculation in scoring app
by abdullah » Thu, 2011-04-28 06:47
0
1,485 by abdullah
Mon, 2014-04-21 06:47
Normal topic Centroid disulfide score weights
by vasek » Wed, 2014-01-22 23:34
0
1,393 by vasek
Mon, 2014-04-21 06:48
Normal topic Homology modeling starter script
by gobli033 » Thu, 2010-04-01 07:27
0
1,322 by gobli033
Mon, 2014-04-21 06:47
Normal topic FARFAR and RNA_Tools: problem executing the command helix_preassemble_setup.py
by obdulia » Wed, 2018-04-18 00:45
0
870 by obdulia
Wed, 2018-04-18 00:45
Normal topic "Rosetta predictions of density, heat of vaporization (∆Hvap) and heat capacity (Cp(l))"
by matteoferla » Tue, 2020-07-14 01:51
0
863 by matteoferla
Tue, 2020-07-14 01:51
Normal topic Get fasta from PDB script correction - Solved
by ialvy » Tue, 2022-08-30 00:00
0
180 by ialvy
Tue, 2022-08-30 00:00
Normal topic Could somebody interpret the rosetta's cluster application result?
by exchhattu » Mon, 2009-11-16 01:58
0
1,462 by exchhattu
Mon, 2014-04-21 06:47
Normal topic cluster results
by albumns » Sun, 2010-07-18 23:59
0
1,239 by albumns
Mon, 2014-04-21 06:47
Normal topic To smlewis............parallel job submission
by anusmita_sahoo » Mon, 2010-04-19 22:28
0
1,334 by anusmita_sahoo
Mon, 2014-04-21 06:47
Normal topic what factors determine the lowest (best) LigInterfaceEnergy score?
by jmaly » Wed, 2020-08-26 13:07
0
778 by jmaly
Wed, 2020-09-02 16:16
Normal topic Rosettascript - change residue number and chain ID
by cttm4a1 » Wed, 2022-09-14 23:40
0
156 by cttm4a1
Wed, 2022-09-14 23:40
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